Rorug03G0037700

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000980
Physical Location & Seq
Forward (+)
2962385 .. 2963409
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0037700.1

Sequence Viewer

Length: 594 bp
ATGGCTTGTGCAGCAACAAGACCCACCTTCTCTTTTCACCTCCCCACCACTTTCTCCCATTCCCCTCATCCAAAACCCAAAACCCAATTCCTCCCAAAGATCCCAAGCATTTCATTGTCACTTACTCACAAGCCCTCCCACAAATTGACCATCACAAACTCCATTGATGTCTCCAAAGAAGATAAACCAACTTCAGACCAGCCCAATCCACCCTCTATAGACTCCACAGACTTAGAAGAAGCCGAACCAAAGATCGATAAGCGCAGGCTTGAGGAGAAATTTGCAGTGTTGAATACTGGGATATATGAATGCAGGTCTTGTGGGTACAAGTATGATGAGGCTGTGGGTGACCCATCATACCCATTACCACCAGGAATGCAATTTGAGAAGCTTCCAGAGGATTGGAGGTGCCCAACATGTGGAGCAGCACAGAGCTTCTTTGTGAGTAAGAGTGTGGAAATTGCTGGGTTTGCAGAGAACCAGCAATTTGGGCTTGGTGGGAATTCACTCACTTCTGGGCAGAAGGCTCTGCTCATTTTTGGGAGCTTGTTCCTTTTCTTTGCTCTTTTCTTGTCTGGATATTTTCTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

197

Amino Acids

21.78

Weight (kDa)

6.2

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rubredoxin PF00301 102 - 147 7.6e-18 Rubredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 303
AccB1I GGYRCC 1 cut(s) 408
AccB7I CCANNNNNTGG 1 cut(s) 419
AclWI GGATC 1 cut(s) 94
AcsI RAATTY 2 cut(s) 278, 502
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 419
AflIII ACRYGT 1 cut(s) 416
AgsI TTSAA 1 cut(s) 292
AjnI CCWGG 1 cut(s) 370
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 3 cut(s) 391, 435, 546
AluI AGCT 3 cut(s) 391, 435, 546
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 1 cut(s) 94
ApeKI GCWGC 2 cut(s) 11, 425
ApoI RAATTY 2 cut(s) 278, 502
AspLEI GCGC 1 cut(s) 264
AsuHPI GGTGA 2 cut(s) 29, 359
BaeGI GKGCMC 1 cut(s) 413
BanI GGYRCC 1 cut(s) 408
BbvI GCAGC 2 cut(s) 23, 437
BccI CCATC 2 cut(s) 158, 361
BciT130I CCWGG 1 cut(s) 372
BcoDI GTCTC 1 cut(s) 175
BfmI CTRYAG 1 cut(s) 216
BfuAI ACCTGC 1 cut(s) 303
BisI GCNGC 2 cut(s) 12, 426
BlsI GCNGC 2 cut(s) 13, 427
Bme1390I CCNGG 1 cut(s) 372
BmiI GGNNCC 1 cut(s) 410
BmrFI CCNGG 1 cut(s) 372
BmrI ACTGGG 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 290
Bsa29I ATCGAT 1 cut(s) 255
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse1I ACTGG 1 cut(s) 301
BseBI CCWGG 1 cut(s) 372
BseCI ATCGAT 1 cut(s) 255
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 419
BseNI ACTGG 1 cut(s) 301
BseRI GAGGAG 1 cut(s) 287
BseSI GKGCMC 1 cut(s) 413
BseXI GCAGC 2 cut(s) 23, 437
BseYI CCCAGC 1 cut(s) 464
BsgI GTGCAG 1 cut(s) 30
BshNI GGYRCC 1 cut(s) 408
BshVI ATCGAT 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 419
BsmAI GTCTC 1 cut(s) 175
BsmI GAATGC 2 cut(s) 314, 381
Bsp1286I GDGCHC 1 cut(s) 413
Bsp143I GATC 2 cut(s) 99, 252
BspDI ATCGAT 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 410
BspMI ACCTGC 1 cut(s) 303
BspPI GGATC 1 cut(s) 94
BspT107I GGYRCC 1 cut(s) 408
BsrI ACTGG 1 cut(s) 301
BssMI GATC 2 cut(s) 99, 252
Bst2UI CCWGG 1 cut(s) 372
BstC8I GCNNGC 1 cut(s) 266
BstDEI CTNAG 1 cut(s) 232
BstEII GGTNACC 1 cut(s) 347
BstF5I GGATG 1 cut(s) 67
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 2 cut(s) 102, 255
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 2 cut(s) 99, 252
BstMWI GCNNNNNNNGC 3 cut(s) 11, 470, 490
BstNI CCWGG 1 cut(s) 372
BstNSI RCATGY 1 cut(s) 420
BstPI GGTNACC 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 370
BstSFI CTRYAG 1 cut(s) 216
BstSLI GKGCMC 1 cut(s) 413
BstV1I GCAGC 2 cut(s) 23, 437
BstX2I RGATCY 1 cut(s) 99
BstXI CCANNNNNNTGG 2 cut(s) 402, 488
BstYI RGATCY 1 cut(s) 99
Bsu15I ATCGAT 1 cut(s) 255
BsuTUI ATCGAT 1 cut(s) 255
BtsCI GGATG 1 cut(s) 67
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 291
BveI ACCTGC 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 266
CfoI GCGC 1 cut(s) 264
ClaI ATCGAT 1 cut(s) 255
Csp6I GTAC 1 cut(s) 325
CviAII CATG 1 cut(s) 417
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 1 cut(s) 232
DpnI GATC 2 cut(s) 101, 254
DpnII GATC 2 cut(s) 99, 252
Eco57I CTGAAG 1 cut(s) 177
Eco91I GGTNACC 1 cut(s) 347
EcoO65I GGTNACC 1 cut(s) 347
EcoRI GAATTC 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 370
FaeI CATG 1 cut(s) 420
FaiI YATR 6 cut(s) 218, 304, 306, 333, 358, 418
FatI CATG 1 cut(s) 416
Fnu4HI GCNGC 2 cut(s) 12, 426
FokI GGATG 1 cut(s) 54
Fsp4HI GCNGC 2 cut(s) 12, 426
GlaI GCGC 1 cut(s) 263
GluI GCNGC 2 cut(s) 12, 426
GsaI CCCAGC 1 cut(s) 468
HhaI GCGC 1 cut(s) 264
Hin1II CATG 1 cut(s) 420
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 1 cut(s) 221
HphI GGTGA 2 cut(s) 29, 359
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 2 cut(s) 395, 576
HpyAV CCTTC 2 cut(s) 37, 517
HpyCH4V TGCA 6 cut(s) 11, 284, 312, 379, 473, 589
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 470, 490
HpyF3I CTNAG 1 cut(s) 232
Hsp92II CATG 1 cut(s) 420
HspAI GCGC 1 cut(s) 262
Kzo9I GATC 2 cut(s) 99, 252
LmnI GCTCC 2 cut(s) 422, 543
Lsp1109I GCAGC 2 cut(s) 23, 437
MaeIII GTNAC 2 cut(s) 117, 347
MalI GATC 2 cut(s) 101, 254
MboI GATC 2 cut(s) 99, 252
MboII GAAGA 2 cut(s) 191, 248
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 413
MluCI AATT 7 cut(s) 86, 143, 278, 380, 459, 485, 502
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 9 cut(s) 50, 75, 101, 145, 223, 265, 331, 391, 399
MspR9I CCNGG 1 cut(s) 372
Mva1269I GAATGC 2 cut(s) 314, 381
MvaI CCWGG 1 cut(s) 372
MwoI GCNNNNNNNGC 3 cut(s) 11, 470, 490
NdeII GATC 2 cut(s) 99, 252
NlaIII CATG 1 cut(s) 420
NlaIV GGNNCC 1 cut(s) 410
NmuCI GTSAC 2 cut(s) 117, 347
NspI RCATGY 1 cut(s) 420
PciI ACATGT 1 cut(s) 416
PctI GAATGC 2 cut(s) 314, 381
PflMI CCANNNNNTGG 1 cut(s) 419
PkrI GCNGC 2 cut(s) 13, 427
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PscI ACATGT 1 cut(s) 416
Psp6I CCWGG 1 cut(s) 370
PspEI GGTNACC 1 cut(s) 347
PspFI CCCAGC 1 cut(s) 464
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 410
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SatI GCNGC 2 cut(s) 12, 426
Sau3AI GATC 2 cut(s) 99, 252
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 372
SduI GDGCHC 1 cut(s) 413
SetI ASST 7 cut(s) 29, 42, 317, 393, 410, 437, 548
SfcI CTRYAG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 7 cut(s) 86, 143, 278, 380, 459, 485, 502
StyD4I CCNGG 1 cut(s) 370
TaqI TCGA 1 cut(s) 255
TasI AATT 7 cut(s) 86, 143, 278, 380, 459, 485, 502
TscAI CASTG 1 cut(s) 291
TseFI GTSAC 2 cut(s) 117, 347
TseI GCWGC 2 cut(s) 11, 425
Tsp45I GTSAC 2 cut(s) 117, 347
TspDTI ATGAA 2 cut(s) 102, 321
TspRI CASTG 1 cut(s) 291
Van91I CCANNNNNTGG 1 cut(s) 419
XapI RAATTY 2 cut(s) 278, 502
XceI RCATGY 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.