Rh3AG097200

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000980
Physical Location & Seq
Reverse (-)
8081748 .. 8083941
2194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG097200.1

Sequence Viewer

Length: 1260 bp
ATGGAGAAGATTCGGTCCACCGCCGATATCACCCAGAAAGCATCGAAAGGTGGGCATGTACAGCACGATTGGGCACCCTCCGTACACCCATTTCTTCATAAATGGGCAGACGAGTATGGTCCAGTATACATGTACTCCACAGGCAGCCAGCAACACCTTGTTGTAAGCGATCCACAGTTAATAAGAGAGCTTAGATCGCACAACTCCATGGATTTGGGTAGACCAACATATATGAATAAGAACTTGCAAGCTTTAACAGGTGATAGCTTTTTGGTCGCTAACGGAGAAAAGTGGGCTTACCAGAGGAAGATCATTGCCCCTAAATTTTTCCTTGACAAGGTTAAGGACATGTTAGGTCTGATGGTGAAATCCACAACGACAACGATTAAGGCATGGAAGAAATCTATACAAGAAAGCGATTCGGGCATTGTGGATATGAGAATTGATGAGGATTTGAAGGCCATATCTAGAGAAGTCCTATCAAGAGCTTGCTTCGGTGGGTCTTACTCTAAAGGCAACCAGATTTTTGCAACTATTTCTGTTCTGGAAGAAGCCTTGTCCGAACCAAATGTGTTCTCTGCGTTTCTAAACTTGAGATTCTTTCCCACAGAGAATTATGACAAGAAGATAAAGAGTTTAAAGAAAGAGGTGGACGCTTTGATACTAAAATTAGTGAGGGATCGTCAGGTTGAAATGCGACGGGATGGTGCATCTCAAAAGGACCTATTACAAATTATACTTGAAAGTGCTGCAAATAGTAGTGACATGCCTGCCCAACTTAAATCAGATAGATTTATTTTGGACACTTGTAAAAGTATGTACTTTGCAGGCGCTCAGACCACTGCTACTGCAGTAGCCTGGACCTTGATGCTTCTGTCACTGCACCATGAATGGCAAGAACGTATTCGCGCTGAGATTGTTGAAGTGTGTGGGGATCATGACCTTCATCAATGCTTGCAACACATAGATACATTACCCAAACTCAAAATGCTAACAATGGTGATTCGAGAGAGTCTGCGTCTTTATCCACCAGCAACAATAACAGCCAAGCATGCTTTAGCAGACATAAAACTAGGGGAGCTTGATGTGCCAGGAGGCACCAACATATGGATCTTCGCACACAGATTGCACCGCGACCCTGAAAATTGGGGGCCAGATGCTAATGAGTTTAAGCCAGAGAGATTTGCAAATGGGGTTTCCAAATCGTGCAAGTATACCCAAGCATATGTGCCATTTGGTTCGGGGCTCGAATTTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

419

Amino Acids

47.42

Weight (kDa)

8.13

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 27 - 415 2.1e-65 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 73, 1097
AccB7I CCANNNNNTGG 1 cut(s) 1107
AccI GTMKAC 3 cut(s) 126, 220, 1214
AccII CGCG 2 cut(s) 909, 1134
AciI CCGC 2 cut(s) 21, 1132
AclWI GGATC 4 cut(s) 164, 687, 942, 1118
AcsI RAATTY 2 cut(s) 323, 1250
AfaI GTAC 4 cut(s) 60, 84, 134, 821
AfiI CCNNNNNNNGG 2 cut(s) 337, 1107
AflIII ACRYGT 2 cut(s) 129, 348
AgsI TTSAA 4 cut(s) 457, 692, 743, 923
AjnI CCWGG 2 cut(s) 857, 1090
AluBI AGCT 5 cut(s) 190, 251, 267, 488, 1081
AluI AGCT 5 cut(s) 190, 251, 267, 488, 1081
AlwI GGATC 4 cut(s) 164, 687, 942, 1118
AoxI GGCC 2 cut(s) 459, 1151
ApeKI GCWGC 2 cut(s) 144, 749
ApoI RAATTY 2 cut(s) 323, 1250
Asp700I GAANNNNTTC 1 cut(s) 903
AspLEI GCGC 2 cut(s) 833, 911
AspS9I GGNCC 5 cut(s) 15, 119, 721, 861, 1151
AsuHPI GGTGA 4 cut(s) 22, 272, 376, 1012
AvaII GGWCC 4 cut(s) 15, 119, 721, 861
BaeGI GKGCMC 1 cut(s) 76
BanI GGYRCC 2 cut(s) 73, 1097
BanII GRGCYC 1 cut(s) 1248
BbvI GCAGC 2 cut(s) 156, 736
BccI CCATC 2 cut(s) 355, 698
BciT130I CCWGG 2 cut(s) 859, 1092
BfaI CTAG 2 cut(s) 468, 1073
BfmI CTRYAG 1 cut(s) 849
BfoI RGCGCY 1 cut(s) 834
BisI GCNGC 2 cut(s) 145, 750
BlsI GCNGC 2 cut(s) 146, 751
Bme1390I CCNGG 2 cut(s) 859, 1092
Bme18I GGWCC 4 cut(s) 15, 119, 721, 861
BmgT120I GGNCC 5 cut(s) 15, 119, 721, 861, 1151
BmiI GGNNCC 3 cut(s) 75, 1099, 1152
BmrFI CCNGG 2 cut(s) 859, 1092
BmsI GCATC 4 cut(s) 50, 719, 858, 1147
BpuEI CTTGAG 1 cut(s) 613
BsaJI CCNNGG 1 cut(s) 207
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 2 cut(s) 337, 1107
Bse1I ACTGG 1 cut(s) 122
Bse3DI GCAATG 1 cut(s) 312
BseBI CCWGG 2 cut(s) 859, 1092
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 709
BseLI CCNNNNNNNGG 2 cut(s) 337, 1107
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 2 cut(s) 848, 903
BseNI ACTGG 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 2 cut(s) 156, 736
BsgI GTGCAG 1 cut(s) 866
Bsh1236I CGCG 2 cut(s) 909, 1134
BshFI GGCC 2 cut(s) 461, 1153
BshNI GGYRCC 2 cut(s) 73, 1097
BslI CCNNNNNNNGG 2 cut(s) 337, 1107
BsnI GGCC 2 cut(s) 461, 1153
Bsp1286I GDGCHC 2 cut(s) 76, 1248
Bsp1407I TGTACA 1 cut(s) 58
Bsp143I GATC 6 cut(s) 169, 194, 309, 679, 934, 1110
Bsp19I CCATGG 1 cut(s) 207
BspACI CCGC 2 cut(s) 21, 1132
BspANI GGCC 2 cut(s) 461, 1153
BspCNI CTCAG 2 cut(s) 847, 904
BspFNI CGCG 2 cut(s) 909, 1134
BspHI TCATGA 1 cut(s) 937
BspLI GGNNCC 3 cut(s) 75, 1099, 1152
BspMAI CTGCAG 1 cut(s) 853
BspPI GGATC 4 cut(s) 164, 687, 942, 1118
BspT107I GGYRCC 2 cut(s) 73, 1097
BsrDI GCAATG 1 cut(s) 312
BsrGI TGTACA 1 cut(s) 58
BsrI ACTGG 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 6 cut(s) 169, 194, 309, 679, 934, 1110
BssNAI GTATAC 2 cut(s) 127, 1215
BssT1I CCWWGG 1 cut(s) 207
Bst1107I GTATAC 2 cut(s) 127, 1215
Bst2UI CCWGG 2 cut(s) 859, 1092
Bst4CI ACNGT 1 cut(s) 177
BstAUI TGTACA 1 cut(s) 58
BstC8I GCNNGC 7 cut(s) 149, 249, 490, 771, 829, 956, 1053
BstDEI CTNAG 3 cut(s) 191, 834, 912
BstDSI CCRYGG 1 cut(s) 207
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 1 cut(s) 709
BstFNI CGCG 2 cut(s) 909, 1134
BstH2I RGCGCY 1 cut(s) 834
BstHHI GCGC 2 cut(s) 833, 911
BstKTI GATC 6 cut(s) 172, 197, 312, 682, 937, 1113
BstMBI GATC 6 cut(s) 169, 194, 309, 679, 934, 1110
BstMWI GCNNNNNNNGC 5 cut(s) 61, 196, 423, 1052, 1087
BstNI CCWGG 2 cut(s) 859, 1092
BstNSI RCATGY 5 cut(s) 59, 133, 352, 769, 1055
BstSCI CCNGG 2 cut(s) 857, 1090
BstSFI CTRYAG 1 cut(s) 849
BstSLI GKGCMC 1 cut(s) 76
BstUI CGCG 2 cut(s) 909, 1134
BstV1I GCAGC 2 cut(s) 156, 736
BstX2I RGATCY 1 cut(s) 1110
BstXI CCANNNNNNTGG 1 cut(s) 214
BstYI RGATCY 1 cut(s) 1110
BstZ17I GTATAC 2 cut(s) 127, 1215
BsuRI GGCC 2 cut(s) 461, 1153
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 709
BtsI GCAGTG 2 cut(s) 840, 878
BtsIMutI CAGTG 2 cut(s) 840, 878
Cac8I GCNNGC 7 cut(s) 149, 249, 490, 771, 829, 956, 1053
CciI TCATGA 1 cut(s) 937
CfoI GCGC 2 cut(s) 833, 911
Cfr13I GGNCC 5 cut(s) 15, 119, 721, 861, 1151
CseI GACGC 2 cut(s) 662, 1007
Csp6I GTAC 4 cut(s) 59, 83, 133, 820
CviAII CATG 9 cut(s) 56, 130, 208, 349, 393, 766, 887, 938, 1052
CviQI GTAC 4 cut(s) 59, 83, 133, 820
DdeI CTNAG 3 cut(s) 191, 834, 912
DpnI GATC 6 cut(s) 171, 196, 311, 681, 936, 1112
DpnII GATC 6 cut(s) 169, 194, 309, 679, 934, 1110
DraI TTTAAA 1 cut(s) 639
Eco130I CCWWGG 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 1248
Eco32I GATATC 1 cut(s) 28
Eco47I GGWCC 4 cut(s) 15, 119, 721, 861
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoO109I RGGNCCY 1 cut(s) 721
EcoRII CCWGG 2 cut(s) 857, 1090
EcoRV GATATC 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 1248
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 9 cut(s) 59, 133, 211, 352, 396, 769, 890, 941, 1055
FatI CATG 9 cut(s) 55, 129, 207, 348, 392, 765, 886, 937, 1051
FauNDI CATATG 2 cut(s) 1106, 1225
FblI GTMKAC 3 cut(s) 126, 220, 1214
Fnu4HI GCNGC 2 cut(s) 145, 750
FokI GGATG 1 cut(s) 716
FriOI GRGCYC 1 cut(s) 1248
Fsp4HI GCNGC 2 cut(s) 145, 750
FspBI CTAG 2 cut(s) 468, 1073
GlaI GCGC 2 cut(s) 832, 910
GluI GCNGC 2 cut(s) 145, 750
HaeII RGCGCY 1 cut(s) 834
HaeIII GGCC 2 cut(s) 461, 1153
HgaI GACGC 2 cut(s) 662, 1007
HhaI GCGC 2 cut(s) 833, 911
Hin1II CATG 9 cut(s) 59, 133, 211, 352, 396, 769, 890, 941, 1055
Hin6I GCGC 2 cut(s) 831, 909
HinP1I GCGC 2 cut(s) 831, 909
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 5 cut(s) 10, 419, 597, 1003, 1012
HphI GGTGA 4 cut(s) 22, 272, 376, 1012
Hpy166II GTNNAC 6 cut(s) 18, 85, 127, 221, 652, 1215
Hpy188I TCNGA 4 cut(s) 360, 562, 787, 837
Hpy188III TCNNGA 5 cut(s) 468, 483, 545, 938, 1007
Hpy8I GTNNAC 6 cut(s) 18, 85, 127, 221, 652, 1215
Hpy99I CGWCG 1 cut(s) 702
HpyAV CCTTC 2 cut(s) 451, 953
HpyCH4III ACNGT 1 cut(s) 177
HpyCH4IV ACGT 1 cut(s) 901
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 196, 423, 1052, 1087
HpyF3I CTNAG 3 cut(s) 191, 834, 912
HpySE526I ACGT 1 cut(s) 901
Hsp92II CATG 9 cut(s) 59, 133, 211, 352, 396, 769, 890, 941, 1055
HspAI GCGC 2 cut(s) 831, 909
Kzo9I GATC 6 cut(s) 169, 194, 309, 679, 934, 1110
LmnI GCTCC 1 cut(s) 1078
Lsp1109I GCAGC 2 cut(s) 156, 736
LweI GCATC 4 cut(s) 50, 719, 858, 1147
MaeI CTAG 2 cut(s) 468, 1073
MaeII ACGT 1 cut(s) 901
MaeIII GTNAC 2 cut(s) 761, 876
MalI GATC 6 cut(s) 171, 196, 311, 681, 936, 1112
MboI GATC 6 cut(s) 169, 194, 309, 679, 934, 1110
MboII GAAGA 7 cut(s) 19, 86, 319, 409, 560, 637, 1105
MflI RGATCY 1 cut(s) 1110
MhlI GDGCHC 2 cut(s) 76, 1248
MluCI AATT 7 cut(s) 323, 441, 613, 668, 732, 1144, 1250
MlyI GAGTC 1 cut(s) 1021
MnlI CCTC 6 cut(s) 88, 297, 442, 640, 669, 1088
MroXI GAANNNNTTC 1 cut(s) 903
MseI TTAA 7 cut(s) 179, 254, 342, 387, 638, 780, 1170
MspR9I CCNGG 2 cut(s) 859, 1092
MvaI CCWGG 2 cut(s) 859, 1092
MvnI CGCG 2 cut(s) 909, 1134
MwoI GCNNNNNNNGC 5 cut(s) 61, 196, 423, 1052, 1087
NcoI CCATGG 1 cut(s) 207
NdeI CATATG 2 cut(s) 1106, 1225
NdeII GATC 6 cut(s) 169, 194, 309, 679, 934, 1110
NlaIII CATG 9 cut(s) 59, 133, 211, 352, 396, 769, 890, 941, 1055
NlaIV GGNNCC 3 cut(s) 75, 1099, 1152
NmuCI GTSAC 2 cut(s) 761, 876
NspI RCATGY 5 cut(s) 59, 133, 352, 769, 1055
PaeI GCATGC 1 cut(s) 1055
PagI TCATGA 1 cut(s) 937
PciI ACATGT 2 cut(s) 129, 348
PdmI GAANNNNTTC 1 cut(s) 903
PfeI GAWTC 4 cut(s) 10, 419, 597, 1003
PflMI CCANNNNNTGG 1 cut(s) 1107
PkrI GCNGC 2 cut(s) 146, 751
PleI GAGTC 1 cut(s) 1020
PpsI GAGTC 1 cut(s) 1020
PpuMI RGGWCCY 1 cut(s) 721
PscI ACATGT 2 cut(s) 129, 348
Psp5II RGGWCCY 1 cut(s) 721
Psp6I CCWGG 2 cut(s) 857, 1090
PspGI CCWGG 2 cut(s) 857, 1090
PspN4I GGNNCC 3 cut(s) 75, 1099, 1152
PspPI GGNCC 5 cut(s) 15, 119, 721, 861, 1151
PspPPI RGGWCCY 1 cut(s) 721
PstI CTGCAG 1 cut(s) 853
PsuI RGATCY 1 cut(s) 1110
RsaI GTAC 4 cut(s) 60, 84, 134, 821
RsaNI GTAC 4 cut(s) 59, 83, 133, 820
SaqAI TTAA 7 cut(s) 179, 254, 342, 387, 638, 780, 1170
SatI GCNGC 2 cut(s) 145, 750
Sau3AI GATC 6 cut(s) 169, 194, 309, 679, 934, 1110
Sau96I GGNCC 5 cut(s) 15, 119, 721, 861, 1151
SchI GAGTC 1 cut(s) 1021
ScrFI CCNGG 2 cut(s) 859, 1092
SduI GDGCHC 2 cut(s) 76, 1248
SfaNI GCATC 4 cut(s) 50, 719, 858, 1147
SfcI CTRYAG 1 cut(s) 849
SinI GGWCC 4 cut(s) 15, 119, 721, 861
SmlI CTYRAG 1 cut(s) 592
SmoI CTYRAG 1 cut(s) 592
SphI GCATGC 1 cut(s) 1055
Sse9I AATT 7 cut(s) 323, 441, 613, 668, 732, 1144, 1250
SsiI CCGC 2 cut(s) 21, 1132
SspMI CTAG 2 cut(s) 468, 1073
StyD4I CCNGG 2 cut(s) 857, 1090
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 177
TaiI ACGT 1 cut(s) 904
TaqI TCGA 3 cut(s) 44, 1006, 1248
TasI AATT 7 cut(s) 323, 441, 613, 668, 732, 1144, 1250
TatI WGTACW 3 cut(s) 58, 132, 819
TfiI GAWTC 4 cut(s) 10, 419, 597, 1003
Tru1I TTAA 7 cut(s) 179, 254, 342, 387, 638, 780, 1170
Tru9I TTAA 7 cut(s) 179, 254, 342, 387, 638, 780, 1170
TscAI CASTG 2 cut(s) 847, 885
TseFI GTSAC 2 cut(s) 761, 876
TseI GCWGC 2 cut(s) 144, 749
Tsp45I GTSAC 2 cut(s) 761, 876
TspDTI ATGAA 4 cut(s) 86, 248, 903, 935
TspGWI ACGGA 2 cut(s) 70, 297
TspRI CASTG 2 cut(s) 847, 885
Van91I CCANNNNNTGG 1 cut(s) 1107
VpaK11BI GGWCC 4 cut(s) 15, 119, 721, 861
XagI CCTNNNNNAGG 1 cut(s) 335
XapI RAATTY 2 cut(s) 323, 1250
XbaI TCTAGA 1 cut(s) 467
XceI RCATGY 5 cut(s) 59, 133, 352, 769, 1055
XmiI GTMKAC 3 cut(s) 126, 220, 1214
XmnI GAANNNNTTC 1 cut(s) 903
XspI CTAG 2 cut(s) 468, 1073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.