Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000980

Physical Location & Seq

Genomic Coordinates Forward (+)

37332759 .. 37332947

Gene Structure 189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57136

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGCCGTTTGGAGTTGGTGCTCGCATTTGTGTTGGCCAACACCTAGCCATGACAGAATTGAAGGTGATTATGTCTCTCATTTTATCCAAGTTTTCTTTCTCACTCTCTCCTACTTACCAACACTGCCCAGCTTTTAAGCTAGTTATTGAGGGTGCGTTTTGGGGGGATTTTTTGCTCCCCTGCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0010268 GO:0010817 GO:0016128 GO:0016131 GO:0016491 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

62

Amino Acids

6.86

Weight (kDa)

7.75

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 46	2.8e-13	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000980)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g09064 FvH4_6g09311 FvH4_6g09311 FvH4_6g09320 FvH4_6g09321
malus_domestica	MD04G1178700.v1.1 MD04G1178800.v1.1
prunus_persica	Prupe.6G298600_v2.0.a1 Prupe.6G298700_v2.0.a1 Prupe.6G298700_v2.0.a1
pyrus_communis	pycom04g15800 pycom07g07860
rosa_chinensis	RchiOBHm_Chr1g0344961 RchiOBHm_Chr1g0345061 RchiOBHm_Chr3g0459711 RchiOBHm_Chr3g0459721 RchiOBHm_Chr3g0459861 RchiOBHm_Chr3g0459871 RchiOBHm_Chr7g0204441
rosa_laevigata	RLG00000003461 RLG00000025055 RLG00000025064 RLG00000025065
rosa_multiflora	Rmu_sc0000240.1_g000030 Rmu_sc0000240.1_g000031 Rmu_sc0000240.1_g000041 Rmu_sc0000240.1_g000042 Rmu_ssc0000443.1_g000007
rosa_roxburghii	Rroxscaffold_3G00253100 Rroxscaffold_4G00309460 Rroxscaffold_6G00419950 Rroxscaffold_6G00420030 Rroxscaffold_6G00420040 Rroxscaffold_6G00420050
rosa_rugosa	Rorug01G0374300 Rorug03G0037700 Rorug03G0037800 Rorug03G0038100 Rorug03G0038100 Rorug07G0084000 Rorug07G0084000 Rorug07G0084100
rosa_samantha	Rh2AG299100 Rh2DG322700 Rh2DG322800 Rh3AG096200 Rh3AG096300 Rh3AG097200 Rh3BG098900 Rh3BG099000 Rh3BG099900 Rh3CG100800 Rh3CG100900 Rh3CG101700 Rh3CG101800 Rh3DG100200 Rh3DG101400 Rh3DG101500 Rh7AG213700 Rh7BG211500 Rh7CG226500 Rh7DG220900
rosa_wichuraiana	Rw7G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	187
AcoI	YGGCCR	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	61
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AluBI	AGCT	2 cut(s)	131, 139
AluI	AGCT	2 cut(s)	131, 139
Alw21I	GWGCWC	1 cut(s)	22
Alw26I	GTCTC	1 cut(s)	78
AoxI	GGCC	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	2 cut(s)	44, 140
BseYI	CCCAGC	1 cut(s)	127
BshFI	GGCC	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	22
BspANI	GGCC	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	36
BtsI	GCAGTG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	22
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	4 cut(s)	36, 47, 131, 139
CviKI_1	RGCY	4 cut(s)	36, 47, 131, 139
EaeI	YGGCCR	1 cut(s)	34
FaeI	CATG	1 cut(s)	52
FaiI	YATR	3 cut(s)	50, 71, 187
FatI	CATG	1 cut(s)	48
FspBI	CTAG	2 cut(s)	44, 140
GsaI	CCCAGC	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	36
Hin1II	CATG	1 cut(s)	52
HphI	GGTGA	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	55
Hsp92II	CATG	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	180
LpnPI	CCDG	1 cut(s)	141
MaeI	CTAG	2 cut(s)	44, 140
MhlI	GDGCHC	1 cut(s)	22
MlsI	TGGCCA	1 cut(s)	36
MluCI	AATT	1 cut(s)	56
MluNI	TGGCCA	1 cut(s)	36
MnlI	CCTC	1 cut(s)	142
Mox20I	TGGCCA	1 cut(s)	36
MscI	TGGCCA	1 cut(s)	36
MseI	TTAA	1 cut(s)	135
Msp20I	TGGCCA	1 cut(s)	36
NlaIII	CATG	1 cut(s)	52
PsiI	TTATAA	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	4 cut(s)	45, 66, 133, 141
SgeI	CNNG	6 cut(s)	33, 56, 61, 100, 140, 152
Sse9I	AATT	1 cut(s)	56
SspMI	CTAG	2 cut(s)	44, 140
TasI	AATT	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	128
TspRI	CASTG	1 cut(s)	128
XspI	CTAG	2 cut(s)	44, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.