Rh3CG100900

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000980
Physical Location & Seq
Forward (+)
8004868 .. 8008977
4110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG100900.1

Sequence Viewer

Length: 1215 bp
ATGGAGGAGGGTCTAGAGTTAGCAGTACTGGTGTGTTGGTCAGTTTTGTTGCTCGGTGTATTGAGCTTGTTGATGAGATTTCTTAGCCAGATGTGGCTGAAGCCTGCAAGGATACGATCGGTGCTTTCGAAACAAGGCATCCGAGGGCCACGGCCTTCGTTTCTGGTTGGGAACGTTCCGGAGATGCAAAAGATTCAATCAAACACGACCAACATGATCACCCGGCAGAAACAACCATCTGATATCGATGGTCAACGTGTGCAGCACAATTGGGATTCGTCCATGTTTCCTTATCTTCAGCAATGGGCACGTGAGTATGGTGCGGTATTCTTATACTCCACAGGAGCCAAACAACACTTGTATGTGAGCGATCCTAAGTTGTTAAGGGAGCTGAAACTGCACAACTCCTTGGATTTGGGCAGACCAACATATCTGAGTAAGCCTCTAAAGCCATTGCTAGGTAACGGCCTTATTGTAGCTAACGGACATGAATGGGCTTACCAGAGGAAACTTATTGCCCCTGAATTCTTCCTTGACAAAGTTAAGGGCATGGTAGGTTTAATGGAGGAATCAACGATGGCACTACTCGAGACATGGGAGAGCCGAATTCTAGAAAGCGAGTCGAGCATTGTTGAGATGAGGATAGATCAGGATTTGAAGAAACTCTCGGCGGATATCATATCAAGAGCTTGTTTCGGCAGCTCATATTCCCAAGGCAACCAGATTTTTGCGAAGATTGCTTTCTTGCAAGACGCATTGTCGAAACCTAATTTGCTCTTTGGGTTTCTAAATTTCAGATTCTTTCGCACTGAGACTGACAAGAAGATAAGAAACATGAACAAAGAGGTGGATGCTATGATACTCAAATTAGTGAACGATCGTCGGGCTCAAAGCGAATCGGGTGGTGTATATGAGAAGGATCTATTAGAAATGATACTTGAAAGTGCTGCTAGAGATAGTACTGACATGCCTCATTATAGACATAAAACAGACCGTTTTATTCTGGACAATTGTAGAAATATCTACTTTGCAGGTTCTGAGACCACCGCTCTTACAGTTTCATGGACCTTGATGCTTCTGTCATTACACCCGGAATGGCAGGAACGTATTCGTGCAGAGATCGTTGAGGTTTGCGGGGATCATGAACTCTACCATTGCTTGCAAGACATGGATACACTCCGCAAGTTCAAAACGCGTAACACTAATCTTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

404

Amino Acids

46.56

Weight (kDa)

8.45

Isoelectric Point (pI)

35.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 93 - 393 7.9e-40 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1022
AccBSI CCGCTC 1 cut(s) 1049
AccII CGCG 1 cut(s) 1195
AccIII TCCGGA 1 cut(s) 178
AciI CCGC 5 cut(s) 323, 671, 1047, 1134, 1180
AclI AACGTT 1 cut(s) 174
AclWI GGATC 3 cut(s) 365, 927, 1146
AcsI RAATTY 3 cut(s) 524, 606, 790
AcuI CTGAAG 2 cut(s) 119, 281
AcvI CACGTG 1 cut(s) 311
AfaI GTAC 2 cut(s) 27, 961
AfiI CCNNNNNNNGG 1 cut(s) 458
AflIII ACRYGT 2 cut(s) 256, 1193
AgsI TTSAA 4 cut(s) 197, 658, 941, 1189
AhdI GACNNNNNGTC 1 cut(s) 757
AluBI AGCT 5 cut(s) 66, 391, 479, 689, 702
AluI AGCT 5 cut(s) 66, 391, 479, 689, 702
Alw26I GTCTC 3 cut(s) 584, 806, 1034
AlwI GGATC 3 cut(s) 365, 927, 1146
AlwNI CAGNNNCTG 1 cut(s) 1037
Ama87I CYCGRG 1 cut(s) 587
Aor13HI TCCGGA 1 cut(s) 178
AoxI GGCC 3 cut(s) 146, 152, 466
ApeKI GCWGC 3 cut(s) 262, 699, 947
ApoI RAATTY 3 cut(s) 524, 606, 790
Asp700I GAANNNNTTC 1 cut(s) 1107
AspS9I GGNCC 2 cut(s) 146, 1065
AsuC2I CCSGG 2 cut(s) 223, 1091
AsuHPI GGTGA 1 cut(s) 211
AsuII TTCGAA 1 cut(s) 128
AvaI CYCGRG 1 cut(s) 587
AvaII GGWCC 1 cut(s) 1065
BaeGI GKGCMC 1 cut(s) 310
BanII GRGCYC 1 cut(s) 889
BbrPI CACGTG 1 cut(s) 311
BbvI GCAGC 3 cut(s) 274, 711, 934
BccI CCATC 3 cut(s) 242, 244, 571
BceAI ACGGC 2 cut(s) 167, 481
BciVI GTATCC 2 cut(s) 105, 1165
BclI TGATCA 1 cut(s) 216
BcnI CCSGG 2 cut(s) 223, 1091
BcoDI GTCTC 3 cut(s) 584, 806, 1034
BfaI CTAG 4 cut(s) 14, 458, 611, 951
BfuAI ACCTGC 1 cut(s) 1022
BfuI GTATCC 2 cut(s) 105, 1165
BisI GCNGC 3 cut(s) 263, 700, 948
BlsI GCNGC 3 cut(s) 264, 701, 949
BmcAI AGTACT 2 cut(s) 27, 961
Bme1390I CCNGG 2 cut(s) 223, 1091
Bme18I GGWCC 1 cut(s) 1065
BmeRI GACNNNNNGTC 1 cut(s) 757
BmeT110I CYCGRG 1 cut(s) 587
BmgT120I GGNCC 2 cut(s) 146, 1065
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 2 cut(s) 223, 1091
BmsI GCATC 4 cut(s) 147, 174, 841, 1062
BplI GAGNNNNNCTC 2 cut(s) 427, 459
Bpu14I TTCGAA 1 cut(s) 128
BpuMI CCSGG 2 cut(s) 223, 1091
Bsa29I ATCGAT 1 cut(s) 246
BsaAI YACGTR 2 cut(s) 311, 1212
BsaI GGTCTC 1 cut(s) 1034
BsaJI CCNNGG 4 cut(s) 142, 149, 408, 712
BsaWI WCCGGW 1 cut(s) 178
Bsc4I CCNNNNNNNGG 1 cut(s) 458
Bse1I ACTGG 1 cut(s) 33
Bse3DI GCAATG 3 cut(s) 308, 452, 1153
BseAI TCCGGA 1 cut(s) 178
BseCI ATCGAT 1 cut(s) 246
BseDI CCNNGG 4 cut(s) 142, 149, 408, 712
BseGI GGATG 2 cut(s) 138, 856
BseLI CCNNNNNNNGG 1 cut(s) 458
BseMI GCAATG 3 cut(s) 308, 452, 1153
BseMII CTCAG 3 cut(s) 425, 801, 1029
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 310
BseXI GCAGC 3 cut(s) 274, 711, 934
BsgI GTGCAG 3 cut(s) 281, 383, 1134
Bsh1236I CGCG 1 cut(s) 1195
Bsh1285I CGRYCG 2 cut(s) 119, 880
BshFI GGCC 3 cut(s) 148, 154, 468
BshVI ATCGAT 1 cut(s) 246
BsiEI CGRYCG 2 cut(s) 119, 880
BsiHKCI CYCGRG 1 cut(s) 587
BsiSI CCGG 3 cut(s) 179, 223, 1091
BslI CCNNNNNNNGG 1 cut(s) 458
BsmAI GTCTC 3 cut(s) 584, 806, 1034
BsnI GGCC 3 cut(s) 148, 154, 468
Bso31I GGTCTC 1 cut(s) 1034
BsoBI CYCGRG 1 cut(s) 587
Bsp119I TTCGAA 1 cut(s) 128
Bsp1286I GDGCHC 2 cut(s) 310, 889
Bsp13I TCCGGA 1 cut(s) 178
Bsp143I GATC 8 cut(s) 116, 216, 370, 646, 877, 919, 1119, 1138
BspACI CCGC 5 cut(s) 323, 671, 1047, 1134, 1180
BspANI GGCC 3 cut(s) 148, 154, 468
BspCNI CTCAG 3 cut(s) 426, 802, 1030
BspDI ATCGAT 1 cut(s) 246
BspEI TCCGGA 1 cut(s) 178
BspFNI CGCG 1 cut(s) 1195
BspHI TCATGA 1 cut(s) 1141
BspLI GGNNCC 1 cut(s) 346
BspMI ACCTGC 1 cut(s) 1022
BspPI GGATC 3 cut(s) 365, 927, 1146
BspT104I TTCGAA 1 cut(s) 128
BspTNI GGTCTC 1 cut(s) 1034
BsrBI CCGCTC 1 cut(s) 1049
BsrDI GCAATG 3 cut(s) 308, 452, 1153
BsrI ACTGG 1 cut(s) 33
BssECI CCNNGG 4 cut(s) 142, 149, 408, 712
BssMI GATC 8 cut(s) 116, 216, 370, 646, 877, 919, 1119, 1138
BssT1I CCWWGG 2 cut(s) 408, 712
Bst4CI ACNGT 2 cut(s) 995, 1057
BstBAI YACGTR 2 cut(s) 311, 1212
BstBI TTCGAA 1 cut(s) 128
BstC8I GCNNGC 2 cut(s) 105, 1160
BstDEI CTNAG 5 cut(s) 83, 375, 434, 810, 1038
BstDSI CCRYGG 1 cut(s) 149
BstF5I GGATG 2 cut(s) 138, 856
BstFNI CGCG 1 cut(s) 1195
BstKTI GATC 8 cut(s) 119, 219, 373, 649, 880, 922, 1122, 1141
BstMAI GTCTC 3 cut(s) 584, 806, 1034
BstMBI GATC 8 cut(s) 116, 216, 370, 646, 877, 919, 1119, 1138
BstMCI CGRYCG 2 cut(s) 119, 880
BstMWI GCNNNNNNNGC 4 cut(s) 397, 448, 624, 737
BstNSI RCATGY 1 cut(s) 970
BstSCI CCNGG 2 cut(s) 221, 1089
BstSLI GKGCMC 1 cut(s) 310
BstSNI TACGTA 1 cut(s) 1212
BstUI CGCG 1 cut(s) 1195
BstV1I GCAGC 3 cut(s) 274, 711, 934
BstX2I RGATCY 1 cut(s) 919
BstYI RGATCY 1 cut(s) 919
Bsu15I ATCGAT 1 cut(s) 246
BsuI GTATCC 2 cut(s) 105, 1165
BsuRI GGCC 3 cut(s) 148, 154, 468
BsuTUI ATCGAT 1 cut(s) 246
BtgI CCRYGG 1 cut(s) 149
BtsCI GGATG 2 cut(s) 138, 856
BtsIMutI CAGTG 1 cut(s) 807
BveI ACCTGC 1 cut(s) 1022
Cac8I GCNNGC 2 cut(s) 105, 1160
CaiI CAGNNNCTG 1 cut(s) 1037
CciI TCATGA 1 cut(s) 1141
Cfr13I GGNCC 2 cut(s) 146, 1065
ClaI ATCGAT 1 cut(s) 246
CseI GACGC 1 cut(s) 761
Csp6I GTAC 2 cut(s) 26, 960
CviQI GTAC 2 cut(s) 26, 960
DdeI CTNAG 5 cut(s) 83, 375, 434, 810, 1038
DpnI GATC 8 cut(s) 118, 218, 372, 648, 879, 921, 1121, 1140
DpnII GATC 8 cut(s) 116, 216, 370, 646, 877, 919, 1119, 1138
DriI GACNNNNNGTC 1 cut(s) 757
Eam1105I GACNNNNNGTC 1 cut(s) 757
EciI GGCGGA 1 cut(s) 686
Eco105I TACGTA 1 cut(s) 1212
Eco130I CCWWGG 2 cut(s) 408, 712
Eco24I GRGCYC 1 cut(s) 889
Eco31I GGTCTC 1 cut(s) 1034
Eco32I GATATC 2 cut(s) 244, 676
Eco47I GGWCC 1 cut(s) 1065
Eco57I CTGAAG 2 cut(s) 119, 281
Eco72I CACGTG 1 cut(s) 311
Eco88I CYCGRG 1 cut(s) 587
EcoRI GAATTC 2 cut(s) 524, 606
EcoRV GATATC 2 cut(s) 244, 676
EcoT14I CCWWGG 2 cut(s) 408, 712
EcoT38I GRGCYC 1 cut(s) 889
ErhI CCWWGG 2 cut(s) 408, 712
FauI CCCGC 1 cut(s) 1127
FbaI TGATCA 1 cut(s) 216
Fnu4HI GCNGC 3 cut(s) 263, 700, 948
FokI GGATG 2 cut(s) 125, 863
FriOI GRGCYC 1 cut(s) 889
Fsp4HI GCNGC 3 cut(s) 263, 700, 948
FspBI CTAG 4 cut(s) 14, 458, 611, 951
GluI GCNGC 3 cut(s) 263, 700, 948
HaeIII GGCC 3 cut(s) 148, 154, 468
HapII CCGG 3 cut(s) 179, 223, 1091
HgaI GACGC 1 cut(s) 761
HincII GTYRAC 1 cut(s) 254
HindII GTYRAC 1 cut(s) 254
HinfI GANTC 6 cut(s) 193, 275, 569, 620, 798, 896
HpaII CCGG 3 cut(s) 179, 223, 1091
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 2 cut(s) 254, 874
Hpy188I TCNGA 5 cut(s) 143, 241, 435, 797, 1039
Hpy188III TCNNGA 8 cut(s) 14, 179, 589, 611, 650, 684, 1004, 1142
Hpy8I GTNNAC 2 cut(s) 254, 874
Hpy99I CGWCG 1 cut(s) 885
HpyAV CCTTC 2 cut(s) 165, 910
HpyCH4III ACNGT 2 cut(s) 995, 1057
HpyCH4IV ACGT 5 cut(s) 174, 256, 310, 1105, 1211
HpyCH4V TGCA 8 cut(s) 107, 187, 262, 400, 748, 1031, 1115, 1162
HpyF10VI GCNNNNNNNGC 4 cut(s) 397, 448, 624, 737
HpyF3I CTNAG 5 cut(s) 83, 375, 434, 810, 1038
HpySE526I ACGT 5 cut(s) 174, 256, 310, 1105, 1211
Kpn2I TCCGGA 1 cut(s) 178
Ksp22I TGATCA 1 cut(s) 216
Kzo9I GATC 8 cut(s) 116, 216, 370, 646, 877, 919, 1119, 1138
LmnI GCTCC 2 cut(s) 344, 388
Lsp1109I GCAGC 3 cut(s) 274, 711, 934
LweI GCATC 4 cut(s) 147, 174, 841, 1062
MaeI CTAG 4 cut(s) 14, 458, 611, 951
MaeII ACGT 5 cut(s) 174, 256, 310, 1105, 1211
MaeIII GTNAC 2 cut(s) 461, 1196
MalI GATC 8 cut(s) 118, 218, 372, 648, 879, 921, 1121, 1140
MbiI CCGCTC 1 cut(s) 1049
MboI GATC 8 cut(s) 116, 216, 370, 646, 877, 919, 1119, 1138
MboII GAAGA 5 cut(s) 287, 520, 670, 745, 835
MfeI CAATTG 2 cut(s) 268, 1009
MflI RGATCY 1 cut(s) 919
MhlI GDGCHC 2 cut(s) 310, 889
MluCI AATT 7 cut(s) 268, 524, 606, 769, 790, 866, 1009
MluI ACGCGT 1 cut(s) 1193
MlyI GAGTC 1 cut(s) 629
MnlI CCTC 8 cut(s) 137, 453, 498, 559, 633, 838, 981, 1120
MroI TCCGGA 1 cut(s) 178
MroXI GAANNNNTTC 1 cut(s) 1107
MseI TTAA 3 cut(s) 383, 543, 560
MslI CAYNNNNRTG 1 cut(s) 360
MspI CCGG 3 cut(s) 179, 223, 1091
MspR9I CCNGG 2 cut(s) 223, 1091
MunI CAATTG 2 cut(s) 268, 1009
MvnI CGCG 1 cut(s) 1195
MwoI GCNNNNNNNGC 4 cut(s) 397, 448, 624, 737
NciI CCSGG 2 cut(s) 223, 1091
NdeII GATC 8 cut(s) 116, 216, 370, 646, 877, 919, 1119, 1138
NlaIV GGNNCC 1 cut(s) 346
NmeAIII GCCGAG 1 cut(s) 647
NspI RCATGY 1 cut(s) 970
NspV TTCGAA 1 cut(s) 128
PaeR7I CTCGAG 1 cut(s) 587
PagI TCATGA 1 cut(s) 1141
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PdmI GAANNNNTTC 1 cut(s) 1107
PfeI GAWTC 5 cut(s) 193, 275, 569, 798, 896
PkrI GCNGC 3 cut(s) 264, 701, 949
Ple19I CGATCG 2 cut(s) 119, 880
PleI GAGTC 1 cut(s) 628
PmaCI CACGTG 1 cut(s) 311
PmlI CACGTG 1 cut(s) 311
PpsI GAGTC 1 cut(s) 628
Ppu21I YACGTR 2 cut(s) 311, 1212
Psp1406I AACGTT 1 cut(s) 174
PspCI CACGTG 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 2 cut(s) 146, 1065
PstNI CAGNNNCTG 1 cut(s) 1037
PsuI RGATCY 1 cut(s) 919
PvuI CGATCG 2 cut(s) 119, 880
RsaI GTAC 2 cut(s) 27, 961
RsaNI GTAC 2 cut(s) 26, 960
RseI CAYNNNNRTG 1 cut(s) 360
SaqAI TTAA 3 cut(s) 383, 543, 560
SatI GCNGC 3 cut(s) 263, 700, 948
Sau3AI GATC 8 cut(s) 116, 216, 370, 646, 877, 919, 1119, 1138
Sau96I GGNCC 2 cut(s) 146, 1065
ScaI AGTACT 2 cut(s) 27, 961
SchI GAGTC 1 cut(s) 629
ScrFI CCNGG 2 cut(s) 223, 1091
SduI GDGCHC 2 cut(s) 310, 889
SfaNI GCATC 4 cut(s) 147, 174, 841, 1062
Sfr274I CTCGAG 1 cut(s) 587
SfuI TTCGAA 1 cut(s) 128
SinI GGWCC 1 cut(s) 1065
SlaI CTCGAG 1 cut(s) 587
SmiMI CAYNNNNRTG 1 cut(s) 360
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
SnaBI TACGTA 1 cut(s) 1212
Sse9I AATT 7 cut(s) 268, 524, 606, 769, 790, 866, 1009
SsiI CCGC 5 cut(s) 323, 671, 1047, 1134, 1180
SspMI CTAG 4 cut(s) 14, 458, 611, 951
StyD4I CCNGG 2 cut(s) 221, 1089
StyI CCWWGG 2 cut(s) 408, 712
TaaI ACNGT 2 cut(s) 995, 1057
TaiI ACGT 5 cut(s) 177, 259, 313, 1108, 1214
TaqI TCGA 5 cut(s) 128, 246, 588, 623, 761
TasI AATT 7 cut(s) 268, 524, 606, 769, 790, 866, 1009
TatI WGTACW 2 cut(s) 25, 959
TfiI GAWTC 5 cut(s) 193, 275, 569, 798, 896
Tru1I TTAA 3 cut(s) 383, 543, 560
Tru9I TTAA 3 cut(s) 383, 543, 560
TscAI CASTG 1 cut(s) 814
TseI GCWGC 3 cut(s) 262, 699, 947
TspDTI ATGAA 4 cut(s) 504, 851, 1050, 1158
TspGWI ACGGA 1 cut(s) 498
TspRI CASTG 1 cut(s) 814
VpaK11BI GGWCC 1 cut(s) 1065
XapI RAATTY 3 cut(s) 524, 606, 790
XbaI TCTAGA 2 cut(s) 13, 610
XceI RCATGY 1 cut(s) 970
XhoI CTCGAG 1 cut(s) 587
XmnI GAANNNNTTC 1 cut(s) 1107
XspI CTAG 4 cut(s) 14, 458, 611, 951
ZrmI AGTACT 2 cut(s) 27, 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.