Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000980

Physical Location & Seq

Genomic Coordinates Reverse (-)

8175967 .. 8176416

Gene Structure 450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42641

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGATTATGCATCTGAAAATGCAGCTAACAATGGTGATTCAAGAGAGTCTGCGTCTTTATCCACCAGCAACAATAACAGCCAAGCATGCTTTAGCAGACATAAAACTAGGGGAGCTTGATGTGCCAGGAGGCACCAACATATGGATCTTCGCACACAGATTGCACCGCGACCCTGAAAATTGGGGGCCAGATGCTAATGAGTTTAAGCCAGAGAGATTTGCAAATGGGGTTTCCAAATCGTGCAAGTATACCCAAGCATATGTGCCATTTGGTTTCGGGCCTCGAATTTGCATAGGCCAGAACTTTGTTATGACGCAAATGAAGATAATACTCTCCCTAATCCTTTCCAAGTTCTCATTTTCTATTTCTCCGAATTATCACCATTCTCCTGTCTCTCCAATGTTACTATTGCCTGAACATGGAATTAGGCTTCTTGTTAGTCCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

149

Amino Acids

16.81

Weight (kDa)

9.23

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	9 - 145	6.2e-38	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000980)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g09064 FvH4_6g09311 FvH4_6g09311 FvH4_6g09320 FvH4_6g09321
malus_domestica	MD04G1178700.v1.1 MD04G1178800.v1.1
prunus_persica	Prupe.6G298600_v2.0.a1 Prupe.6G298700_v2.0.a1 Prupe.6G298700_v2.0.a1
pyrus_communis	pycom04g15800 pycom07g07860
rosa_chinensis	RchiOBHm_Chr1g0344961 RchiOBHm_Chr1g0345061 RchiOBHm_Chr3g0459711 RchiOBHm_Chr3g0459721 RchiOBHm_Chr3g0459861 RchiOBHm_Chr3g0459871 RchiOBHm_Chr7g0204441
rosa_laevigata	RLG00000003461 RLG00000025055 RLG00000025064 RLG00000025065
rosa_multiflora	Rmu_sc0000240.1_g000030 Rmu_sc0000240.1_g000031 Rmu_sc0000240.1_g000041 Rmu_sc0000240.1_g000042 Rmu_ssc0000443.1_g000007
rosa_roxburghii	Rroxscaffold_3G00253100 Rroxscaffold_4G00309460 Rroxscaffold_6G00419950 Rroxscaffold_6G00420030 Rroxscaffold_6G00420040 Rroxscaffold_6G00420050
rosa_rugosa	Rorug01G0374300 Rorug03G0037700 Rorug03G0037800 Rorug03G0038100 Rorug03G0038100 Rorug07G0084000 Rorug07G0084000 Rorug07G0084100
rosa_samantha	Rh2AG299100 Rh2DG322700 Rh2DG322800 Rh3AG096200 Rh3AG096300 Rh3AG097200 Rh3BG098900 Rh3BG099000 Rh3BG099900 Rh3CG100800 Rh3CG100900 Rh3CG101700 Rh3CG101800 Rh3DG100200 Rh3DG101400 Rh3DG101500 Rh7AG213700 Rh7BG211500 Rh7CG226500 Rh7DG220900
rosa_wichuraiana	Rw7G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AccB7I	CCANNNNNTGG	1 cut(s)	141
AccI	GTMKAC	1 cut(s)	248
AccII	CGCG	1 cut(s)	168
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	285
AfiI	CCNNNNNNNGG	2 cut(s)	141, 419
AgsI	TTSAA	1 cut(s)	41
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	2 cut(s)	25, 115
AluI	AGCT	2 cut(s)	25, 115
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	3 cut(s)	185, 278, 295
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	285
AspS9I	GGNCC	2 cut(s)	185, 278
AsuHPI	GGTGA	2 cut(s)	46, 371
BanI	GGYRCC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	126
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	1 cut(s)	107
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
Bme1390I	CCNGG	1 cut(s)	126
BmgT120I	GGNCC	2 cut(s)	185, 278
BmiI	GGNNCC	2 cut(s)	133, 186
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	2 cut(s)	19, 181
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 419
BseBI	CCWGG	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	141, 419
BseXI	GCAGC	1 cut(s)	34
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	3 cut(s)	187, 280, 297
BshNI	GGYRCC	1 cut(s)	131
BslI	CCNNNNNNNGG	2 cut(s)	141, 419
BsmAI	GTCTC	1 cut(s)	397
BsnI	GGCC	3 cut(s)	187, 280, 297
Bsp143I	GATC	1 cut(s)	144
BspACI	CCGC	1 cut(s)	166
BspANI	GGCC	3 cut(s)	187, 280, 297
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	133, 186
BspPI	GGATC	1 cut(s)	152
BspT107I	GGYRCC	1 cut(s)	131
BssMI	GATC	1 cut(s)	144
BssNAI	GTATAC	1 cut(s)	249
Bst1107I	GTATAC	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	87
BstFNI	CGCG	1 cut(s)	168
BstKTI	GATC	1 cut(s)	147
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	1 cut(s)	144
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 121
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	124
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	144
BstZ17I	GTATAC	1 cut(s)	249
BsuRI	GGCC	3 cut(s)	187, 280, 297
Cac8I	GCNNGC	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	185, 278
CseI	GACGC	2 cut(s)	41, 322
CviAII	CATG	2 cut(s)	86, 419
CviJI	RGCY	8 cut(s)	25, 80, 115, 187, 208, 280, 297, 430
CviKI_1	RGCY	8 cut(s)	25, 80, 115, 187, 208, 280, 297, 430
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	124
EcoT22I	ATGCAT	1 cut(s)	12
FaeI	CATG	2 cut(s)	89, 422
FatI	CATG	2 cut(s)	85, 418
FauNDI	CATATG	2 cut(s)	140, 259
FblI	GTMKAC	1 cut(s)	248
Fnu4HI	GCNGC	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	23
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	1 cut(s)	23
HaeIII	GGCC	3 cut(s)	187, 280, 297
HgaI	GACGC	2 cut(s)	41, 322
Hin1II	CATG	2 cut(s)	89, 422
HinfI	GANTC	2 cut(s)	37, 46
HphI	GGTGA	2 cut(s)	46, 371
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	2 cut(s)	15, 372
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	1 cut(s)	249
HpyCH4V	TGCA	6 cut(s)	10, 22, 163, 221, 243, 291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 121
Hsp92II	CATG	2 cut(s)	89, 422
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	9 cut(s)	78, 111, 138, 186, 201, 222, 311, 402, 426
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	2 cut(s)	19, 181
MaeI	CTAG	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	402
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	2 cut(s)	139, 334
MflI	RGATCY	1 cut(s)	144
MluCI	AATT	4 cut(s)	178, 285, 373, 423
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	2 cut(s)	122, 291
Mph1103I	ATGCAT	1 cut(s)	12
MseI	TTAA	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	86, 121
NdeI	CATATG	2 cut(s)	140, 259
NdeII	GATC	1 cut(s)	144
NlaIII	CATG	2 cut(s)	89, 422
NlaIV	GGNNCC	2 cut(s)	133, 186
NsiI	ATGCAT	1 cut(s)	12
NspI	RCATGY	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	37
PflMI	CCANNNNNTGG	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	24
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	133, 186
PspPI	GGNCC	2 cut(s)	185, 278
PsuI	RGATCY	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	1 cut(s)	144
Sau96I	GGNCC	2 cut(s)	185, 278
SchI	GAGTC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	2 cut(s)	27, 117
SfaNI	GCATC	2 cut(s)	19, 181
SphI	GCATGC	1 cut(s)	89
Sse9I	AATT	4 cut(s)	178, 285, 373, 423
SsiI	CCGC	1 cut(s)	166
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	124
TaqI	TCGA	1 cut(s)	283
TasI	AATT	4 cut(s)	178, 285, 373, 423
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseI	GCWGC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	335
Van91I	CCANNNNNTGG	1 cut(s)	141
XapI	RAATTY	1 cut(s)	285
XceI	RCATGY	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	248
XspI	CTAG	1 cut(s)	107
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.