Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000980

Physical Location & Seq

Genomic Coordinates Forward (+)

40411199 .. 40412363

Gene Structure 1165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG322700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCAGCAATGTTGATATTTTGGACCATTTTCTTCATTGGCATTGTGAGCGTGTTTACGAGATTGCTTAACCGAGTGTGGCTCAAACCTAGAAGGATTCGATCAGTGCTGTGGAAGCAAGGCATCAGAGGACCGCAGCCTTCATTTCTTTTCGGAAACATTGCAGAGATGGAGAAGATTCGGTCCACCGCCAATTTCACCCAGAAAGCATCGAAAGGTCGGCATGTGCAGCACGATTGGACCTCCGTGCACCCAGTTCTTCATAAATGGGCAGAGGAGTACGGTCCGGTATACATGTACTCCACAGGCAGCCAGCAACACCTTGTTGTAAGCGATCCACAGTTAATGAGAGAGCTTAGATCGTACAACTCCATGAATTTGGGTAGACCAACATATATGAATAAGAACTTCCAAGCTTTAACAGGTGATAGCTTTTTGGTCGTTAACGGAGAAAAGTGGGCATACCAGAGGAAGATCATTGCCCCTGAATTTTTCCTTCACAAGGTTAAGGACATGTTGGGTCTGATGGAGAAATCCACGACGACAACGATTAAGGCATGGGAGAGATCTATACAAGAAAGCGATTTGGGCATTGTGGATATGAGAGTTGATGAGGATTTGAATGCCATATCTAGAGAAATCCTATCAAGAGCTTGCTTCGGTAGGTCTTACTCTGAAGGCAACCAGATTTTTGCTAATATTTCTCTCCTGAAAGAAGCCTTGTGCGAACCAAGTGTGTTCTTTGGGTTTCAAAATTTGAGGTTTGCAGTTCAAAAACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

260

Amino Acids

30.1

Weight (kDa)

9.69

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	76 - 235	1e-14	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000980)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g09064 FvH4_6g09311 FvH4_6g09311 FvH4_6g09320 FvH4_6g09321
malus_domestica	MD04G1178700.v1.1 MD04G1178800.v1.1
prunus_persica	Prupe.6G298600_v2.0.a1 Prupe.6G298700_v2.0.a1 Prupe.6G298700_v2.0.a1
pyrus_communis	pycom04g15800 pycom07g07860
rosa_chinensis	RchiOBHm_Chr1g0344961 RchiOBHm_Chr1g0345061 RchiOBHm_Chr3g0459711 RchiOBHm_Chr3g0459721 RchiOBHm_Chr3g0459861 RchiOBHm_Chr3g0459871 RchiOBHm_Chr7g0204441
rosa_laevigata	RLG00000003461 RLG00000025055 RLG00000025064 RLG00000025065
rosa_multiflora	Rmu_sc0000240.1_g000030 Rmu_sc0000240.1_g000031 Rmu_sc0000240.1_g000041 Rmu_sc0000240.1_g000042 Rmu_ssc0000443.1_g000007
rosa_roxburghii	Rroxscaffold_3G00253100 Rroxscaffold_4G00309460 Rroxscaffold_6G00419950 Rroxscaffold_6G00420030 Rroxscaffold_6G00420040 Rroxscaffold_6G00420050
rosa_rugosa	Rorug01G0374300 Rorug03G0037700 Rorug03G0037800 Rorug03G0038100 Rorug03G0038100 Rorug07G0084000 Rorug07G0084000 Rorug07G0084100
rosa_samantha	Rh2AG299100 Rh2DG322700 Rh2DG322800 Rh3AG096200 Rh3AG096300 Rh3AG097200 Rh3BG098900 Rh3BG099000 Rh3BG099900 Rh3CG100800 Rh3CG100900 Rh3CG101700 Rh3CG101800 Rh3DG100200 Rh3DG101400 Rh3DG101500 Rh7AG213700 Rh7BG211500 Rh7CG226500 Rh7DG220900
rosa_wichuraiana	Rw7G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	291, 385
AciI	CCGC	2 cut(s)	134, 189
AclWI	GGATC	1 cut(s)	329
AcsI	RAATTY	3 cut(s)	376, 488, 754
AcuI	CTGAAG	1 cut(s)	696
AfaI	GTAC	3 cut(s)	281, 299, 365
AfiI	CCNNNNNNNGG	1 cut(s)	502
AflIII	ACRYGT	2 cut(s)	294, 513
AgsI	TTSAA	3 cut(s)	622, 752, 773
AluBI	AGCT	4 cut(s)	355, 416, 432, 653
AluI	AGCT	4 cut(s)	355, 416, 432, 653
Alw21I	GWGCWC	1 cut(s)	252
Alw44I	GTGCAC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	329
ApaLI	GTGCAC	1 cut(s)	248
ApeKI	GCWGC	4 cut(s)	5, 136, 229, 309
ApoI	RAATTY	3 cut(s)	376, 488, 754
AspS9I	GGNCC	5 cut(s)	24, 131, 183, 240, 284
AsuHPI	GGTGA	2 cut(s)	190, 437
AvaII	GGWCC	5 cut(s)	24, 131, 183, 240, 284
BaeGI	GKGCMC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	4 cut(s)	17, 148, 241, 321
BccI	CCATC	2 cut(s)	163, 520
BfaI	CTAG	3 cut(s)	90, 633, 781
BglII	AGATCT	1 cut(s)	566
BisI	GCNGC	4 cut(s)	6, 137, 230, 310
BlsI	GCNGC	4 cut(s)	7, 138, 231, 311
Bme18I	GGWCC	5 cut(s)	24, 131, 183, 240, 284
BmgT120I	GGNCC	5 cut(s)	24, 131, 183, 240, 284
BmrI	ACTGGG	1 cut(s)	248
BmsI	GCATC	2 cut(s)	132, 218
BmuI	ACTGGG	1 cut(s)	248
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
BsaWI	WCCGGW	1 cut(s)	286
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse1I	ACTGG	1 cut(s)	254
Bse3DI	GCAATG	3 cut(s)	15, 159, 477
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMI	GCAATG	3 cut(s)	15, 159, 477
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	290
BseSI	GKGCMC	1 cut(s)	252
BseXI	GCAGC	4 cut(s)	17, 148, 241, 321
BsgI	GTGCAG	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	502
BsmI	GAATGC	1 cut(s)	628
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	5 cut(s)	101, 334, 359, 474, 566
BspACI	CCGC	2 cut(s)	134, 189
BspPI	GGATC	1 cut(s)	329
BsrDI	GCAATG	3 cut(s)	15, 159, 477
BsrI	ACTGG	1 cut(s)	254
BssMI	GATC	5 cut(s)	101, 334, 359, 474, 566
BssNAI	GTATAC	1 cut(s)	292
Bst1107I	GTATAC	1 cut(s)	292
Bst4CI	ACNGT	2 cut(s)	284, 342
BstC8I	GCNNGC	2 cut(s)	314, 655
BstDEI	CTNAG	1 cut(s)	356
BstENI	CCTNNNNNAGG	1 cut(s)	500
BstKTI	GATC	5 cut(s)	104, 337, 362, 477, 569
BstMBI	GATC	5 cut(s)	101, 334, 359, 474, 566
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 115, 229, 588
BstNSI	RCATGY	3 cut(s)	227, 298, 517
BstSLI	GKGCMC	1 cut(s)	252
BstV1I	GCAGC	4 cut(s)	17, 148, 241, 321
BstX2I	RGATCY	1 cut(s)	566
BstXI	CCANNNNNNTGG	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	566
BstZ17I	GTATAC	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	314, 655
Cfr13I	GGNCC	5 cut(s)	24, 131, 183, 240, 284
CpoI	CGGWCCG	1 cut(s)	284
Csp6I	GTAC	3 cut(s)	280, 298, 364
CspI	CGGWCCG	1 cut(s)	284
CviAII	CATG	5 cut(s)	224, 295, 373, 514, 558
CviJI	RGCY	8 cut(s)	82, 139, 312, 355, 416, 432, 653, 719
CviKI_1	RGCY	8 cut(s)	82, 139, 312, 355, 416, 432, 653, 719
CviQI	GTAC	3 cut(s)	280, 298, 364
DdeI	CTNAG	1 cut(s)	356
DpnI	GATC	5 cut(s)	103, 336, 361, 476, 568
DpnII	GATC	5 cut(s)	101, 334, 359, 474, 566
Eco47I	GGWCC	5 cut(s)	24, 131, 183, 240, 284
Eco57I	CTGAAG	1 cut(s)	696
EcoNI	CCTNNNNNAGG	1 cut(s)	500
FaeI	CATG	5 cut(s)	227, 298, 376, 517, 561
FatI	CATG	5 cut(s)	223, 294, 372, 513, 557
FblI	GTMKAC	2 cut(s)	291, 385
Fnu4HI	GCNGC	4 cut(s)	6, 137, 230, 310
Fsp4HI	GCNGC	4 cut(s)	6, 137, 230, 310
FspBI	CTAG	3 cut(s)	90, 633, 781
GluI	GCNGC	4 cut(s)	6, 137, 230, 310
HapII	CCGG	1 cut(s)	287
Hin1II	CATG	5 cut(s)	227, 298, 376, 517, 561
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HindIII	AAGCTT	1 cut(s)	414
HinfI	GANTC	2 cut(s)	97, 178
HpaI	GTTAAC	1 cut(s)	445
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	2 cut(s)	190, 437
Hpy166II	GTNNAC	6 cut(s)	57, 186, 250, 292, 386, 445
Hpy188I	TCNGA	4 cut(s)	128, 155, 525, 676
Hpy188III	TCNNGA	3 cut(s)	633, 648, 709
Hpy8I	GTNNAC	6 cut(s)	57, 186, 250, 292, 386, 445
Hpy99I	CGWCG	1 cut(s)	544
HpyAV	CCTTC	4 cut(s)	87, 150, 506, 671
HpyCH4III	ACNGT	2 cut(s)	284, 342
HpyCH4V	TGCA	4 cut(s)	164, 229, 250, 767
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 115, 229, 588
HpyF3I	CTNAG	1 cut(s)	356
Hsp92II	CATG	5 cut(s)	227, 298, 376, 517, 561
KspAI	GTTAAC	1 cut(s)	445
Kzo9I	GATC	5 cut(s)	101, 334, 359, 474, 566
Lsp1109I	GCAGC	4 cut(s)	17, 148, 241, 321
LweI	GCATC	2 cut(s)	132, 218
MaeI	CTAG	3 cut(s)	90, 633, 781
MalI	GATC	5 cut(s)	103, 336, 361, 476, 568
MboI	GATC	5 cut(s)	101, 334, 359, 474, 566
MboII	GAAGA	4 cut(s)	25, 187, 251, 484
MflI	RGATCY	1 cut(s)	566
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	4 cut(s)	193, 376, 488, 754
MnlI	CCTC	6 cut(s)	122, 253, 268, 462, 607, 753
MseI	TTAA	6 cut(s)	69, 344, 419, 444, 507, 552
MspI	CCGG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	628
MwoI	GCNNNNNNNGC	4 cut(s)	48, 115, 229, 588
NdeII	GATC	5 cut(s)	101, 334, 359, 474, 566
NlaIII	CATG	5 cut(s)	227, 298, 376, 517, 561
NspI	RCATGY	3 cut(s)	227, 298, 517
PciI	ACATGT	2 cut(s)	294, 513
PcsI	WCGNNNNNNNCGW	1 cut(s)	545
PctI	GAATGC	1 cut(s)	628
PfeI	GAWTC	2 cut(s)	97, 178
PkrI	GCNGC	4 cut(s)	7, 138, 231, 311
PscI	ACATGT	2 cut(s)	294, 513
PspPI	GGNCC	5 cut(s)	24, 131, 183, 240, 284
PsuI	RGATCY	1 cut(s)	566
RsaI	GTAC	3 cut(s)	281, 299, 365
RsaNI	GTAC	3 cut(s)	280, 298, 364
Rsr2I	CGGWCCG	1 cut(s)	284
RsrII	CGGWCCG	1 cut(s)	284
SaqAI	TTAA	6 cut(s)	69, 344, 419, 444, 507, 552
SatI	GCNGC	4 cut(s)	6, 137, 230, 310
Sau3AI	GATC	5 cut(s)	101, 334, 359, 474, 566
Sau96I	GGNCC	5 cut(s)	24, 131, 183, 240, 284
SduI	GDGCHC	1 cut(s)	252
SfaNI	GCATC	2 cut(s)	132, 218
SinI	GGWCC	5 cut(s)	24, 131, 183, 240, 284
Sse9I	AATT	4 cut(s)	193, 376, 488, 754
SsiI	CCGC	2 cut(s)	134, 189
SspI	AATATT	1 cut(s)	700
SspMI	CTAG	3 cut(s)	90, 633, 781
TaaI	ACNGT	2 cut(s)	284, 342
TaqI	TCGA	2 cut(s)	100, 212
TaqII	GACCGA	1 cut(s)	171
TasI	AATT	4 cut(s)	193, 376, 488, 754
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	2 cut(s)	97, 178
Tru1I	TTAA	6 cut(s)	69, 344, 419, 444, 507, 552
Tru9I	TTAA	6 cut(s)	69, 344, 419, 444, 507, 552
TscAI	CASTG	1 cut(s)	111
TseI	GCWGC	4 cut(s)	5, 136, 229, 309
TspDTI	ATGAA	5 cut(s)	25, 132, 251, 389, 413
TspGWI	ACGGA	2 cut(s)	235, 462
TspRI	CASTG	1 cut(s)	111
VneI	GTGCAC	1 cut(s)	248
VpaK11BI	GGWCC	5 cut(s)	24, 131, 183, 240, 284
XagI	CCTNNNNNAGG	1 cut(s)	500
XapI	RAATTY	3 cut(s)	376, 488, 754
XbaI	TCTAGA	1 cut(s)	632
XceI	RCATGY	3 cut(s)	227, 298, 517
XmiI	GTMKAC	2 cut(s)	291, 385
XspI	CTAG	3 cut(s)	90, 633, 781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.