Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000980

Physical Location & Seq

Genomic Coordinates Reverse (-)

41393385 .. 41394257

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00420040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCTTCTGTCATTGCACCCGGAATGGCAGGACCGCATCCGTGCGGAGATCATTGAGGTTTGTGGGGTTCTGAATAAACTCCATCATTCCTTGCACGACATGGATATGTTGCGAAAGTTCAAAGTGCTGACTATGGTGATTCAAGAGAGTATGCGTCTTTATCCATCTGGAGTCCTAATTGCAAGGGCTATTCTGGCAAATGTGAAGTTGGGCGACCTTGATGTGCCCAAGGGCACCAACATCCATGTATGCAGTGCTGCATTACACTGCGACCCTGAAAATTGGGGTCCAGATGCTGATGAGTTTAAGCCAGAGAGGTTTGCAAATGGGATATCTAATGCCTGCAAGCATCCCCAAGCCTATGTGCCATTTGGTTTTGGAACTCGAGTGTGCATAGGACAGACTTTTGCTATGACACAGCTGAAGATAGTGCTCTCTCTAATCTTGTCCAAGTTCTCAGTTTCCCTTTCTCCAAACTATCGCCATTCACCTGTTCACAAAATGATACTGATGCCTAAACATGGAATCAGACTCCTTGTTGAGCCTGTGCAAACAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

186

Amino Acids

20.89

Weight (kDa)

8.85

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 179	3.9e-46	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000980)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g09064 FvH4_6g09311 FvH4_6g09311 FvH4_6g09320 FvH4_6g09321
malus_domestica	MD04G1178700.v1.1 MD04G1178800.v1.1
prunus_persica	Prupe.6G298600_v2.0.a1 Prupe.6G298700_v2.0.a1 Prupe.6G298700_v2.0.a1
pyrus_communis	pycom04g15800 pycom07g07860
rosa_chinensis	RchiOBHm_Chr1g0344961 RchiOBHm_Chr1g0345061 RchiOBHm_Chr3g0459711 RchiOBHm_Chr3g0459721 RchiOBHm_Chr3g0459861 RchiOBHm_Chr3g0459871 RchiOBHm_Chr7g0204441
rosa_laevigata	RLG00000003461 RLG00000025055 RLG00000025064 RLG00000025065
rosa_multiflora	Rmu_sc0000240.1_g000030 Rmu_sc0000240.1_g000031 Rmu_sc0000240.1_g000041 Rmu_sc0000240.1_g000042 Rmu_ssc0000443.1_g000007
rosa_roxburghii	Rroxscaffold_3G00253100 Rroxscaffold_4G00309460 Rroxscaffold_6G00419950 Rroxscaffold_6G00420030 Rroxscaffold_6G00420040 Rroxscaffold_6G00420050
rosa_rugosa	Rorug01G0374300 Rorug03G0037700 Rorug03G0037800 Rorug03G0038100 Rorug03G0038100 Rorug07G0084000 Rorug07G0084000 Rorug07G0084100
rosa_samantha	Rh2AG299100 Rh2DG322700 Rh2DG322800 Rh3AG096200 Rh3AG096300 Rh3AG097200 Rh3BG098900 Rh3BG099000 Rh3BG099900 Rh3CG100800 Rh3CG100900 Rh3CG101700 Rh3CG101800 Rh3DG100200 Rh3DG101400 Rh3DG101500 Rh7AG213700 Rh7BG211500 Rh7CG226500 Rh7DG220900
rosa_wichuraiana	Rw7G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	233
AciI	CCGC	2 cut(s)	34, 44
AcuI	CTGAAG	1 cut(s)	443
AfiI	CCNNNNNNNGG	1 cut(s)	521
AgsI	TTSAA	2 cut(s)	121, 143
AluBI	AGCT	2 cut(s)	421, 558
AluI	AGCT	2 cut(s)	421, 558
Alw21I	GWGCWC	1 cut(s)	435
AlwNI	CAGNNNCTG	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	384
ApeKI	GCWGC	1 cut(s)	257
AspS9I	GGNCC	2 cut(s)	31, 287
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	2 cut(s)	148, 480
AvaI	CYCGRG	1 cut(s)	384
AvaII	GGWCC	2 cut(s)	31, 287
BaeGI	GKGCMC	2 cut(s)	228, 236
BanI	GGYRCC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	435
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	2 cut(s)	90, 172
BcnI	CCSGG	1 cut(s)	20
BfaI	CTAG	1 cut(s)	559
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	2 cut(s)	31, 287
BmeT110I	CYCGRG	1 cut(s)	384
BmgT120I	GGNCC	2 cut(s)	31, 287
BmiI	GGNNCC	2 cut(s)	235, 288
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	4 cut(s)	45, 283, 358, 501
BpmI	CTGGAG	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	1 cut(s)	521
Bse3DI	GCAATG	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	3 cut(s)	36, 240, 349
BseLI	CCNNNNNNNGG	1 cut(s)	521
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	1 cut(s)	471
BseSI	GKGCMC	2 cut(s)	228, 236
BseXI	GCAGC	1 cut(s)	244
BshNI	GGYRCC	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	435
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	521
BsoBI	CYCGRG	1 cut(s)	384
Bsp1286I	GDGCHC	3 cut(s)	228, 236, 435
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	2 cut(s)	34, 44
BspCNI	CTCAG	1 cut(s)	470
BspLI	GGNNCC	2 cut(s)	235, 288
BspT107I	GGYRCC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	228
BstC8I	GCNNGC	2 cut(s)	343, 347
BstDEI	CTNAG	1 cut(s)	457
BstF5I	GGATG	3 cut(s)	36, 240, 349
BstKTI	GATC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	18
BstSLI	GKGCMC	2 cut(s)	228, 236
BstV1I	GCAGC	1 cut(s)	244
BtsCI	GGATG	3 cut(s)	36, 240, 349
BtsI	GCAGTG	2 cut(s)	259, 265
BtsIMutI	CAGTG	2 cut(s)	259, 265
Cac8I	GCNNGC	2 cut(s)	343, 347
CaiI	CAGNNNCTG	1 cut(s)	296
Cfr13I	GGNCC	2 cut(s)	31, 287
CseI	GACGC	1 cut(s)	143
CviAII	CATG	3 cut(s)	100, 245, 521
CviJI	RGCY	6 cut(s)	188, 310, 359, 421, 544, 558
CviKI_1	RGCY	6 cut(s)	188, 310, 359, 421, 544, 558
DdeI	CTNAG	1 cut(s)	457
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	228
Eco32I	GATATC	1 cut(s)	333
Eco47I	GGWCC	2 cut(s)	31, 287
Eco57I	CTGAAG	1 cut(s)	443
Eco88I	CYCGRG	1 cut(s)	384
EcoRV	GATATC	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	3 cut(s)	103, 248, 524
FatI	CATG	3 cut(s)	99, 244, 520
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	3 cut(s)	23, 227, 336
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	1 cut(s)	559
GluI	GCNGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	189
HapII	CCGG	1 cut(s)	20
HgaI	GACGC	1 cut(s)	143
Hin1II	CATG	3 cut(s)	103, 248, 524
HinfI	GANTC	4 cut(s)	139, 171, 525, 531
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	148, 480
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188I	TCNGA	2 cut(s)	72, 530
Hpy188III	TCNNGA	3 cut(s)	143, 168, 290
Hpy8I	GTNNAC	1 cut(s)	496
HpyCH4V	TGCA	9 cut(s)	16, 94, 182, 252, 260, 323, 345, 393, 550
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	457
Hsp92II	CATG	3 cut(s)	103, 248, 524
Kzo9I	GATC	1 cut(s)	48
LpnPI	CCDG	9 cut(s)	14, 33, 153, 179, 288, 303, 324, 355, 504
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	4 cut(s)	45, 283, 358, 501
MaeI	CTAG	1 cut(s)	559
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	1 cut(s)	436
MhlI	GDGCHC	3 cut(s)	228, 236, 435
MluCI	AATT	2 cut(s)	177, 280
MlyI	GAGTC	2 cut(s)	180, 525
MnlI	CCTC	2 cut(s)	49, 309
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	421
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	20
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	3 cut(s)	103, 248, 524
NlaIV	GGNNCC	2 cut(s)	235, 288
PaeR7I	CTCGAG	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	139, 525
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	2 cut(s)	179, 525
PpsI	GAGTC	2 cut(s)	179, 525
PspN4I	GGNNCC	2 cut(s)	235, 288
PspPI	GGNCC	2 cut(s)	31, 287
PspXI	VCTCGAGB	1 cut(s)	384
PstNI	CAGNNNCTG	1 cut(s)	296
PvuII	CAGCTG	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	1 cut(s)	48
Sau96I	GGNCC	2 cut(s)	31, 287
SchI	GAGTC	2 cut(s)	180, 525
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	3 cut(s)	228, 236, 435
SetI	ASST	6 cut(s)	60, 219, 320, 423, 493, 560
SfaNI	GCATC	4 cut(s)	45, 283, 358, 501
Sfr274I	CTCGAG	1 cut(s)	384
SinI	GGWCC	2 cut(s)	31, 287
SlaI	CTCGAG	1 cut(s)	384
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
Sse9I	AATT	2 cut(s)	177, 280
SsiI	CCGC	2 cut(s)	34, 44
SspMI	CTAG	1 cut(s)	559
StyD4I	CCNGG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	228
TaqI	TCGA	1 cut(s)	385
TasI	AATT	2 cut(s)	177, 280
TfiI	GAWTC	2 cut(s)	139, 525
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	2 cut(s)	259, 272
TseI	GCWGC	1 cut(s)	257
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	2 cut(s)	259, 272
VpaK11BI	GGWCC	2 cut(s)	31, 287
XhoI	CTCGAG	1 cut(s)	384
XspI	CTAG	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.