Rh3BG099900

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000980
Physical Location & Seq
Reverse (-)
7978474 .. 7983598
5125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG099900.1

Sequence Viewer

Length: 555 bp
ATGGCAGTCCTGTTGATATTTTGGACAATTTTCTTCCCTGGCATTCTGAGCCTGTTTACGAGATTGCTTAACCAGTTATGGCTCAAACCTAGAAGGATTCGATCAGTGCTGTGGAAGCAAGGCATCAGAGGTCCGCAGCCTTCATTTCTTTTCGGAAACACTGCCGAGATGGAGAAGATTCGGTCCACCGCCGATATCACCCAGAAAGCATCGAAAGGTGGGCATGTACAGCACGATTGGGCACCGTCCGTACACCCATTTCTTCATAAATGGGCAGACGAGTATGGTCCTGTATACATGTACTCCACAGGCAGCCAGCAACACCTTGTTGTAAGCGATCCACAGTTAATAAGAGAGCTTAGATCGCACAACTCCATGGATTTGGGTAGACCAACATATATGAATAAGAACTTGCAAGCTTTAACAGGTGATAGCTTTTTGGTCGCTAACGGAGAAAAGTGGGCTTACCAGAGGAAGATCATTGCCCCTGAATTTTTCCTTGATAAGGTTAAGGTATGTGTACGATTCTATATATGTTCTCTAAATTCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

184

Amino Acids

21.25

Weight (kDa)

9.68

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 83 - 169 3.9e-09 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 241
AccI GTMKAC 2 cut(s) 294, 388
AciI CCGC 2 cut(s) 134, 189
AclWI GGATC 1 cut(s) 332
AcsI RAATTY 2 cut(s) 491, 544
AfaI GTAC 4 cut(s) 228, 252, 302, 522
AfiI CCNNNNNNNGG 1 cut(s) 505
AflIII ACRYGT 1 cut(s) 297
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 3 cut(s) 358, 419, 435
AluI AGCT 3 cut(s) 358, 419, 435
AlwI GGATC 1 cut(s) 332
ApeKI GCWGC 2 cut(s) 136, 312
ApoI RAATTY 2 cut(s) 491, 544
AspS9I GGNCC 3 cut(s) 131, 183, 287
AsuHPI GGTGA 2 cut(s) 190, 440
AvaII GGWCC 3 cut(s) 131, 183, 287
BaeGI GKGCMC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 241
BbvI GCAGC 2 cut(s) 148, 324
BccI CCATC 1 cut(s) 163
BciT130I CCWGG 1 cut(s) 39
BfaI CTAG 1 cut(s) 90
BisI GCNGC 2 cut(s) 137, 313
BlsI GCNGC 2 cut(s) 138, 314
Bme1390I CCNGG 1 cut(s) 39
Bme18I GGWCC 3 cut(s) 131, 183, 287
BmgT120I GGNCC 3 cut(s) 131, 183, 287
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 39
BmsI GCATC 2 cut(s) 132, 218
BsaJI CCNNGG 2 cut(s) 37, 375
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 505
Bse1I ACTGG 1 cut(s) 73
Bse3DI GCAATG 1 cut(s) 480
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 2 cut(s) 37, 375
BseLI CCNNNNNNNGG 1 cut(s) 505
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 1 cut(s) 38
BseNI ACTGG 1 cut(s) 73
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 2 cut(s) 148, 324
BshNI GGYRCC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 505
BsmI GAATGC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 244
Bsp1407I TGTACA 1 cut(s) 226
Bsp143I GATC 4 cut(s) 101, 337, 362, 477
Bsp19I CCATGG 1 cut(s) 375
BspACI CCGC 2 cut(s) 134, 189
BspCNI CTCAG 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 243
BspPI GGATC 1 cut(s) 332
BspT107I GGYRCC 1 cut(s) 241
BsrDI GCAATG 1 cut(s) 480
BsrGI TGTACA 1 cut(s) 226
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 37, 375
BssMI GATC 4 cut(s) 101, 337, 362, 477
BssNAI GTATAC 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 375
Bst1107I GTATAC 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 2 cut(s) 246, 345
BstAUI TGTACA 1 cut(s) 226
BstC8I GCNNGC 2 cut(s) 317, 417
BstDEI CTNAG 2 cut(s) 47, 359
BstDSI CCRYGG 1 cut(s) 375
BstENI CCTNNNNNAGG 1 cut(s) 503
BstKTI GATC 4 cut(s) 104, 340, 365, 480
BstMBI GATC 4 cut(s) 101, 337, 362, 477
BstMWI GCNNNNNNNGC 4 cut(s) 48, 115, 229, 364
BstNI CCWGG 1 cut(s) 39
BstNSI RCATGY 2 cut(s) 227, 301
BstSCI CCNGG 1 cut(s) 37
BstSLI GKGCMC 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 148, 324
BstXI CCANNNNNNTGG 1 cut(s) 382
BstZ17I GTATAC 1 cut(s) 295
BtgI CCRYGG 1 cut(s) 375
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 2 cut(s) 111, 159
Cac8I GCNNGC 2 cut(s) 317, 417
Cfr13I GGNCC 3 cut(s) 131, 183, 287
Csp6I GTAC 4 cut(s) 227, 251, 301, 521
CviAII CATG 3 cut(s) 224, 298, 376
CviJI RGCY 8 cut(s) 51, 82, 139, 315, 358, 419, 435, 464
CviKI_1 RGCY 8 cut(s) 51, 82, 139, 315, 358, 419, 435, 464
CviQI GTAC 4 cut(s) 227, 251, 301, 521
DdeI CTNAG 2 cut(s) 47, 359
DpnI GATC 4 cut(s) 103, 339, 364, 479
DpnII GATC 4 cut(s) 101, 337, 362, 477
Eco130I CCWWGG 1 cut(s) 375
Eco32I GATATC 1 cut(s) 196
Eco47I GGWCC 3 cut(s) 131, 183, 287
EcoNI CCTNNNNNAGG 1 cut(s) 503
EcoRII CCWGG 1 cut(s) 37
EcoRV GATATC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 375
FaeI CATG 3 cut(s) 227, 301, 379
FatI CATG 3 cut(s) 223, 297, 375
FblI GTMKAC 2 cut(s) 294, 388
Fnu4HI GCNGC 2 cut(s) 137, 313
Fsp4HI GCNGC 2 cut(s) 137, 313
FspBI CTAG 1 cut(s) 90
GluI GCNGC 2 cut(s) 137, 313
Hin1II CATG 3 cut(s) 227, 301, 379
HindIII AAGCTT 1 cut(s) 417
HinfI GANTC 3 cut(s) 97, 178, 525
HphI GGTGA 2 cut(s) 190, 440
Hpy166II GTNNAC 6 cut(s) 57, 186, 253, 295, 389, 521
Hpy188I TCNGA 3 cut(s) 48, 128, 155
Hpy8I GTNNAC 6 cut(s) 57, 186, 253, 295, 389, 521
HpyAV CCTTC 2 cut(s) 87, 150
HpyCH4III ACNGT 2 cut(s) 246, 345
HpyCH4V TGCA 1 cut(s) 415
HpyF10VI GCNNNNNNNGC 4 cut(s) 48, 115, 229, 364
HpyF3I CTNAG 2 cut(s) 47, 359
Hsp92II CATG 3 cut(s) 227, 301, 379
Kzo9I GATC 4 cut(s) 101, 337, 362, 477
Lsp1109I GCAGC 2 cut(s) 148, 324
LweI GCATC 2 cut(s) 132, 218
MaeI CTAG 1 cut(s) 90
MalI GATC 4 cut(s) 103, 339, 364, 479
MboI GATC 4 cut(s) 101, 337, 362, 477
MboII GAAGA 4 cut(s) 25, 187, 254, 487
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 3 cut(s) 27, 491, 544
MnlI CCTC 2 cut(s) 122, 465
MseI TTAA 5 cut(s) 69, 347, 422, 510, 553
MspR9I CCNGG 1 cut(s) 39
Mva1269I GAATGC 1 cut(s) 42
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 4 cut(s) 48, 115, 229, 364
NcoI CCATGG 1 cut(s) 375
NdeII GATC 4 cut(s) 101, 337, 362, 477
NlaIII CATG 3 cut(s) 227, 301, 379
NlaIV GGNNCC 1 cut(s) 243
NmeAIII GCCGAG 1 cut(s) 190
NspI RCATGY 2 cut(s) 227, 301
PciI ACATGT 1 cut(s) 297
PctI GAATGC 1 cut(s) 42
PfeI GAWTC 3 cut(s) 97, 178, 525
PkrI GCNGC 2 cut(s) 138, 314
PscI ACATGT 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 3 cut(s) 131, 183, 287
RsaI GTAC 4 cut(s) 228, 252, 302, 522
RsaNI GTAC 4 cut(s) 227, 251, 301, 521
SaqAI TTAA 5 cut(s) 69, 347, 422, 510, 553
SatI GCNGC 2 cut(s) 137, 313
Sau3AI GATC 4 cut(s) 101, 337, 362, 477
Sau96I GGNCC 3 cut(s) 131, 183, 287
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 1 cut(s) 244
SfaNI GCATC 2 cut(s) 132, 218
SinI GGWCC 3 cut(s) 131, 183, 287
Sse9I AATT 3 cut(s) 27, 491, 544
SsiI CCGC 2 cut(s) 134, 189
SspMI CTAG 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 37
StyI CCWWGG 1 cut(s) 375
TaaI ACNGT 2 cut(s) 246, 345
TaqI TCGA 2 cut(s) 100, 212
TaqII GACCGA 1 cut(s) 171
TasI AATT 3 cut(s) 27, 491, 544
TatI WGTACW 2 cut(s) 226, 300
TfiI GAWTC 3 cut(s) 97, 178, 525
Tru1I TTAA 5 cut(s) 69, 347, 422, 510, 553
Tru9I TTAA 5 cut(s) 69, 347, 422, 510, 553
TscAI CASTG 2 cut(s) 111, 166
TseI GCWGC 2 cut(s) 136, 312
TspDTI ATGAA 3 cut(s) 132, 254, 416
TspGWI ACGGA 2 cut(s) 238, 465
TspRI CASTG 2 cut(s) 111, 166
VpaK11BI GGWCC 3 cut(s) 131, 183, 287
XagI CCTNNNNNAGG 1 cut(s) 503
XapI RAATTY 2 cut(s) 491, 544
XceI RCATGY 2 cut(s) 227, 301
XmiI GTMKAC 2 cut(s) 294, 388
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.