RchiOBHm_Chr3g0459871

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000980
Physical Location & Seq
Reverse (-)
8176970 .. 8177474
505 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42642

Sequence Viewer

Length: 306 bp
ATGGAGAAGATTCGGTCCACCGCCGATATCACCCAGAAAGCATCGAAAGGTGGGCATGTACAGCACGATTGGGCACCGTCCGTACACCCATTTCTTCATAAATGGGCAGACGAGTATGGTCCTGTATACATGTACTCCACAGGCAGCCAGCAACACCTTGTTGTAAGCTATCCACAGTTAATAAGAGAGCTTAGATCGCACAACTCCATGGATTTGGGTAGACCAACATATATGAATAAGAACTTGCCTCTGAATTTTTCCTTGACAAGGTTAAGGTATGTGTACGATTCTATATATGTTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

101

Amino Acids

11.78

Weight (kDa)

9.26

Isoelectric Point (pI)

51.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AccI GTMKAC 2 cut(s) 126, 220
AciI CCGC 1 cut(s) 21
AcsI RAATTY 1 cut(s) 253
AfaI GTAC 4 cut(s) 60, 84, 134, 284
AfiI CCNNNNNNNGG 1 cut(s) 267
AflIII ACRYGT 1 cut(s) 129
AluBI AGCT 2 cut(s) 168, 190
AluI AGCT 2 cut(s) 168, 190
ApeKI GCWGC 1 cut(s) 144
ApoI RAATTY 1 cut(s) 253
AspS9I GGNCC 2 cut(s) 15, 119
AsuHPI GGTGA 1 cut(s) 22
AvaII GGWCC 2 cut(s) 15, 119
BaeGI GKGCMC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 156
BisI GCNGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 146
Bme18I GGWCC 2 cut(s) 15, 119
BmgT120I GGNCC 2 cut(s) 15, 119
BmiI GGNNCC 1 cut(s) 75
BmsI GCATC 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 207
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 267
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 1 cut(s) 156
BshNI GGYRCC 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 76
Bsp1407I TGTACA 1 cut(s) 58
Bsp143I GATC 1 cut(s) 194
Bsp19I CCATGG 1 cut(s) 207
BspACI CCGC 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 73
BsrGI TGTACA 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 1 cut(s) 194
BssNAI GTATAC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 207
Bst1107I GTATAC 1 cut(s) 127
Bst4CI ACNGT 2 cut(s) 78, 177
BstAUI TGTACA 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 191
BstDSI CCRYGG 1 cut(s) 207
BstENI CCTNNNNNAGG 1 cut(s) 265
BstKTI GATC 1 cut(s) 197
BstMBI GATC 1 cut(s) 194
BstMWI GCNNNNNNNGC 2 cut(s) 61, 196
BstNSI RCATGY 2 cut(s) 59, 133
BstSLI GKGCMC 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 156
BstXI CCANNNNNNTGG 1 cut(s) 214
BstZ17I GTATAC 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 149
Cfr13I GGNCC 2 cut(s) 15, 119
Csp6I GTAC 4 cut(s) 59, 83, 133, 283
CviAII CATG 3 cut(s) 56, 130, 208
CviJI RGCY 3 cut(s) 147, 168, 190
CviKI_1 RGCY 3 cut(s) 147, 168, 190
CviQI GTAC 4 cut(s) 59, 83, 133, 283
DdeI CTNAG 1 cut(s) 191
DpnI GATC 1 cut(s) 196
DpnII GATC 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 207
Eco32I GATATC 1 cut(s) 28
Eco47I GGWCC 2 cut(s) 15, 119
EcoNI CCTNNNNNAGG 1 cut(s) 265
EcoRV GATATC 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 3 cut(s) 59, 133, 211
FatI CATG 3 cut(s) 55, 129, 207
FblI GTMKAC 2 cut(s) 126, 220
Fnu4HI GCNGC 1 cut(s) 145
Fsp4HI GCNGC 1 cut(s) 145
GluI GCNGC 1 cut(s) 145
Hin1II CATG 3 cut(s) 59, 133, 211
HinfI GANTC 2 cut(s) 10, 287
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 5 cut(s) 18, 85, 127, 221, 283
Hpy188I TCNGA 1 cut(s) 252
Hpy8I GTNNAC 5 cut(s) 18, 85, 127, 221, 283
HpyCH4III ACNGT 2 cut(s) 78, 177
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 196
HpyF3I CTNAG 1 cut(s) 191
Hsp92II CATG 3 cut(s) 59, 133, 211
Kzo9I GATC 1 cut(s) 194
LpnPI CCDG 4 cut(s) 47, 126, 135, 161
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 1 cut(s) 50
MalI GATC 1 cut(s) 196
MboI GATC 1 cut(s) 194
MboII GAAGA 2 cut(s) 19, 86
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 1 cut(s) 253
MnlI CCTC 1 cut(s) 258
MseI TTAA 2 cut(s) 179, 272
MwoI GCNNNNNNNGC 2 cut(s) 61, 196
NcoI CCATGG 1 cut(s) 207
NdeII GATC 1 cut(s) 194
NlaIII CATG 3 cut(s) 59, 133, 211
NlaIV GGNNCC 1 cut(s) 75
NspI RCATGY 2 cut(s) 59, 133
PciI ACATGT 1 cut(s) 129
PfeI GAWTC 2 cut(s) 10, 287
PkrI GCNGC 1 cut(s) 146
PscI ACATGT 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 2 cut(s) 15, 119
RsaI GTAC 4 cut(s) 60, 84, 134, 284
RsaNI GTAC 4 cut(s) 59, 83, 133, 283
SaqAI TTAA 2 cut(s) 179, 272
SatI GCNGC 1 cut(s) 145
Sau3AI GATC 1 cut(s) 194
Sau96I GGNCC 2 cut(s) 15, 119
SduI GDGCHC 1 cut(s) 76
SetI ASST 6 cut(s) 52, 159, 170, 192, 272, 278
SfaNI GCATC 1 cut(s) 50
SinI GGWCC 2 cut(s) 15, 119
Sse9I AATT 1 cut(s) 253
SsiI CCGC 1 cut(s) 21
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 78, 177
TaqI TCGA 1 cut(s) 44
TasI AATT 1 cut(s) 253
TatI WGTACW 2 cut(s) 58, 132
TfiI GAWTC 2 cut(s) 10, 287
Tru1I TTAA 2 cut(s) 179, 272
Tru9I TTAA 2 cut(s) 179, 272
TseI GCWGC 1 cut(s) 144
TspDTI ATGAA 2 cut(s) 86, 248
TspGWI ACGGA 1 cut(s) 70
VpaK11BI GGWCC 2 cut(s) 15, 119
XagI CCTNNNNNAGG 1 cut(s) 265
XapI RAATTY 1 cut(s) 253
XceI RCATGY 2 cut(s) 59, 133
XmiI GTMKAC 2 cut(s) 126, 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.