Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000240.1

Orthogroup ID

OG0000980

Physical Location & Seq

Genomic Coordinates Reverse (-)

226987 .. 228736

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000240.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atggcagtcctgttgatattttggacaattttcttccctggcattctgagcctgtttacgagattgcttaaccagttatggctcaaacctagaaggattcgatcagtgctgtggaagcaaggcatcagaggtccgcagccttcatttcttttcggaaacactgccgagatggagaagattcggtccaccgccgatatcacccagaaagcatcgaaaggtgggcatgtacagcacgattgggcaccgtccgtacacccatttcttcataaatgggcagacgagtatggtcctgtatacatgtactccacaggcagccagcaacaccttgttgtaagcgatccacagttaataagagagcttagatcgcacaactccatggatttgggtagaccaacatatatgaataagaacttgcaagctttaacaggtgatagctttttggtcgctaacggagaaaagtgggcttaccagaggaagatcattgcccctgaatttttccttgataaggttaagctaacaatggtgattcaagagagtctgcgtctttatccaccagcaacaataacagccaagcatgctttagcagacataaaactaggggagcttgatgtgccaggaggcaccaacatatggatcttcgcacacagattgcaccgcgaccctgaaaattgggggccagatgctaatgagtttaagccagagagatttgcaaatggggtttccaaatcgtgcaagtatacccaagcatatgtgccatttggtttcggggctggaatttgcataggccagaactttgctatgacgcaaatgaagataatactctccctaatcctttccaagttctcattttctatttctccgaattatcaccattctcctgtctctccaatgttactattgcctgaacatggaattaggcttcttgttagtcctgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

312

Amino Acids

35.38

Weight (kDa)

9.57

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000980)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g09064 FvH4_6g09311 FvH4_6g09311 FvH4_6g09320 FvH4_6g09321
malus_domestica	MD04G1178700.v1.1 MD04G1178800.v1.1
prunus_persica	Prupe.6G298600_v2.0.a1 Prupe.6G298700_v2.0.a1 Prupe.6G298700_v2.0.a1
pyrus_communis	pycom04g15800 pycom07g07860
rosa_chinensis	RchiOBHm_Chr1g0344961 RchiOBHm_Chr1g0345061 RchiOBHm_Chr3g0459711 RchiOBHm_Chr3g0459721 RchiOBHm_Chr3g0459861 RchiOBHm_Chr3g0459871 RchiOBHm_Chr7g0204441
rosa_laevigata	RLG00000003461 RLG00000025055 RLG00000025064 RLG00000025065
rosa_multiflora	Rmu_sc0000240.1_g000030 Rmu_sc0000240.1_g000031 Rmu_sc0000240.1_g000041 Rmu_sc0000240.1_g000042 Rmu_ssc0000443.1_g000007
rosa_roxburghii	Rroxscaffold_3G00253100 Rroxscaffold_4G00309460 Rroxscaffold_6G00419950 Rroxscaffold_6G00420030 Rroxscaffold_6G00420040 Rroxscaffold_6G00420050
rosa_rugosa	Rorug01G0374300 Rorug03G0037700 Rorug03G0037800 Rorug03G0038100 Rorug03G0038100 Rorug07G0084000 Rorug07G0084000 Rorug07G0084100
rosa_samantha	Rh2AG299100 Rh2DG322700 Rh2DG322800 Rh3AG096200 Rh3AG096300 Rh3AG097200 Rh3BG098900 Rh3BG099000 Rh3BG099900 Rh3CG100800 Rh3CG100900 Rh3CG101700 Rh3CG101800 Rh3DG100200 Rh3DG101400 Rh3DG101500 Rh7AG213700 Rh7BG211500 Rh7CG226500 Rh7DG220900
rosa_wichuraiana	Rw7G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	241, 620
AccB7I	CCANNNNNTGG	1 cut(s)	630
AccI	GTMKAC	3 cut(s)	294, 388, 737
AccII	CGCG	1 cut(s)	657
AciI	CCGC	3 cut(s)	134, 189, 655
AclWI	GGATC	2 cut(s)	332, 641
AcsI	RAATTY	2 cut(s)	491, 774
AfaI	GTAC	3 cut(s)	228, 252, 302
AfiI	CCNNNNNNNGG	3 cut(s)	505, 630, 908
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	1 cut(s)	530
AjnI	CCWGG	2 cut(s)	37, 613
AluBI	AGCT	5 cut(s)	358, 419, 435, 514, 604
AluI	AGCT	5 cut(s)	358, 419, 435, 514, 604
Alw26I	GTCTC	1 cut(s)	886
AlwI	GGATC	2 cut(s)	332, 641
AoxI	GGCC	2 cut(s)	674, 784
ApeKI	GCWGC	2 cut(s)	136, 312
ApoI	RAATTY	2 cut(s)	491, 774
AspS9I	GGNCC	4 cut(s)	131, 183, 287, 674
AsuHPI	GGTGA	4 cut(s)	190, 440, 535, 860
AvaII	GGWCC	3 cut(s)	131, 183, 287
BaeGI	GKGCMC	1 cut(s)	244
BanI	GGYRCC	2 cut(s)	241, 620
BbvI	GCAGC	2 cut(s)	148, 324
BccI	CCATC	1 cut(s)	163
BciT130I	CCWGG	2 cut(s)	39, 615
BcoDI	GTCTC	1 cut(s)	886
BfaI	CTAG	2 cut(s)	90, 596
BisI	GCNGC	2 cut(s)	137, 313
BlsI	GCNGC	2 cut(s)	138, 314
Bme1390I	CCNGG	2 cut(s)	39, 615
Bme18I	GGWCC	3 cut(s)	131, 183, 287
BmgT120I	GGNCC	4 cut(s)	131, 183, 287, 674
BmiI	GGNNCC	3 cut(s)	243, 622, 675
BmrFI	CCNGG	2 cut(s)	39, 615
BmsI	GCATC	3 cut(s)	132, 218, 670
BsaJI	CCNNGG	2 cut(s)	37, 375
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	3 cut(s)	505, 630, 908
Bse1I	ACTGG	1 cut(s)	73
Bse3DI	GCAATG	1 cut(s)	480
BseBI	CCWGG	2 cut(s)	39, 615
BseDI	CCNNGG	2 cut(s)	37, 375
BseLI	CCNNNNNNNGG	3 cut(s)	505, 630, 908
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	73
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	2 cut(s)	148, 324
Bsh1236I	CGCG	1 cut(s)	657
BshFI	GGCC	2 cut(s)	676, 786
BshNI	GGYRCC	2 cut(s)	241, 620
BslI	CCNNNNNNNGG	3 cut(s)	505, 630, 908
BsmAI	GTCTC	1 cut(s)	886
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	2 cut(s)	676, 786
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp1407I	TGTACA	1 cut(s)	226
Bsp143I	GATC	5 cut(s)	101, 337, 362, 477, 633
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	3 cut(s)	134, 189, 655
BspANI	GGCC	2 cut(s)	676, 786
BspCNI	CTCAG	1 cut(s)	39
BspFNI	CGCG	1 cut(s)	657
BspLI	GGNNCC	3 cut(s)	243, 622, 675
BspPI	GGATC	2 cut(s)	332, 641
BspT107I	GGYRCC	2 cut(s)	241, 620
BsrDI	GCAATG	1 cut(s)	480
BsrGI	TGTACA	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	37, 375
BssMI	GATC	5 cut(s)	101, 337, 362, 477, 633
BssNAI	GTATAC	2 cut(s)	295, 738
BssT1I	CCWWGG	1 cut(s)	375
Bst1107I	GTATAC	2 cut(s)	295, 738
Bst2UI	CCWGG	2 cut(s)	39, 615
Bst4CI	ACNGT	2 cut(s)	246, 345
BstAUI	TGTACA	1 cut(s)	226
BstC8I	GCNNGC	3 cut(s)	317, 417, 576
BstDEI	CTNAG	2 cut(s)	47, 359
BstDSI	CCRYGG	1 cut(s)	375
BstENI	CCTNNNNNAGG	1 cut(s)	503
BstFNI	CGCG	1 cut(s)	657
BstKTI	GATC	5 cut(s)	104, 340, 365, 480, 636
BstMAI	GTCTC	1 cut(s)	886
BstMBI	GATC	5 cut(s)	101, 337, 362, 477, 633
BstMWI	GCNNNNNNNGC	6 cut(s)	48, 115, 229, 364, 575, 610
BstNI	CCWGG	2 cut(s)	39, 615
BstNSI	RCATGY	3 cut(s)	227, 301, 578
BstSCI	CCNGG	2 cut(s)	37, 613
BstSLI	GKGCMC	1 cut(s)	244
BstUI	CGCG	1 cut(s)	657
BstV1I	GCAGC	2 cut(s)	148, 324
BstX2I	RGATCY	1 cut(s)	633
BstXI	CCANNNNNNTGG	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	633
BstZ17I	GTATAC	2 cut(s)	295, 738
BsuRI	GGCC	2 cut(s)	676, 786
BtgI	CCRYGG	1 cut(s)	375
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	111, 159
Cac8I	GCNNGC	3 cut(s)	317, 417, 576
Cfr13I	GGNCC	4 cut(s)	131, 183, 287, 674
CseI	GACGC	2 cut(s)	530, 811
Csp6I	GTAC	3 cut(s)	227, 251, 301
CviAII	CATG	5 cut(s)	224, 298, 376, 575, 908
CviQI	GTAC	3 cut(s)	227, 251, 301
DdeI	CTNAG	2 cut(s)	47, 359
DpnI	GATC	5 cut(s)	103, 339, 364, 479, 635
DpnII	GATC	5 cut(s)	101, 337, 362, 477, 633
Eco130I	CCWWGG	1 cut(s)	375
Eco32I	GATATC	1 cut(s)	196
Eco47I	GGWCC	3 cut(s)	131, 183, 287
EcoNI	CCTNNNNNAGG	1 cut(s)	503
EcoRII	CCWGG	2 cut(s)	37, 613
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	5 cut(s)	227, 301, 379, 578, 911
FatI	CATG	5 cut(s)	223, 297, 375, 574, 907
FauNDI	CATATG	2 cut(s)	629, 748
FblI	GTMKAC	3 cut(s)	294, 388, 737
Fnu4HI	GCNGC	2 cut(s)	137, 313
Fsp4HI	GCNGC	2 cut(s)	137, 313
FspBI	CTAG	2 cut(s)	90, 596
GluI	GCNGC	2 cut(s)	137, 313
HaeIII	GGCC	2 cut(s)	676, 786
HgaI	GACGC	2 cut(s)	530, 811
Hin1II	CATG	5 cut(s)	227, 301, 379, 578, 911
HindIII	AAGCTT	1 cut(s)	417
HinfI	GANTC	4 cut(s)	97, 178, 526, 535
HphI	GGTGA	4 cut(s)	190, 440, 535, 860
Hpy166II	GTNNAC	6 cut(s)	57, 186, 253, 295, 389, 738
Hpy188I	TCNGA	4 cut(s)	48, 128, 155, 861
Hpy188III	TCNNGA	1 cut(s)	530
Hpy8I	GTNNAC	6 cut(s)	57, 186, 253, 295, 389, 738
HpyAV	CCTTC	2 cut(s)	87, 150
HpyCH4III	ACNGT	2 cut(s)	246, 345
HpyCH4V	TGCA	5 cut(s)	415, 652, 710, 732, 780
HpyF10VI	GCNNNNNNNGC	6 cut(s)	48, 115, 229, 364, 575, 610
HpyF3I	CTNAG	2 cut(s)	47, 359
Hsp92II	CATG	5 cut(s)	227, 301, 379, 578, 911
Kzo9I	GATC	5 cut(s)	101, 337, 362, 477, 633
LmnI	GCTCC	1 cut(s)	601
Lsp1109I	GCAGC	2 cut(s)	148, 324
LweI	GCATC	3 cut(s)	132, 218, 670
MaeI	CTAG	2 cut(s)	90, 596
MaeIII	GTNAC	1 cut(s)	891
MalI	GATC	5 cut(s)	103, 339, 364, 479, 635
MboI	GATC	5 cut(s)	101, 337, 362, 477, 633
MboII	GAAGA	6 cut(s)	25, 187, 254, 487, 628, 823
MflI	RGATCY	1 cut(s)	633
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	6 cut(s)	27, 491, 667, 774, 862, 912
MlyI	GAGTC	1 cut(s)	544
MnlI	CCTC	3 cut(s)	122, 465, 611
MseI	TTAA	5 cut(s)	69, 347, 422, 510, 693
MspR9I	CCNGG	2 cut(s)	39, 615
Mva1269I	GAATGC	1 cut(s)	42
MvaI	CCWGG	2 cut(s)	39, 615
MvnI	CGCG	1 cut(s)	657
MwoI	GCNNNNNNNGC	6 cut(s)	48, 115, 229, 364, 575, 610
NcoI	CCATGG	1 cut(s)	375
NdeI	CATATG	2 cut(s)	629, 748
NdeII	GATC	5 cut(s)	101, 337, 362, 477, 633
NlaIII	CATG	5 cut(s)	227, 301, 379, 578, 911
NlaIV	GGNNCC	3 cut(s)	243, 622, 675
NmeAIII	GCCGAG	1 cut(s)	190
NspI	RCATGY	3 cut(s)	227, 301, 578
PaeI	GCATGC	1 cut(s)	578
PciI	ACATGT	1 cut(s)	297
PctI	GAATGC	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	97, 178, 526
PflMI	CCANNNNNTGG	1 cut(s)	630
PkrI	GCNGC	2 cut(s)	138, 314
PleI	GAGTC	1 cut(s)	543
PpsI	GAGTC	1 cut(s)	543
PscI	ACATGT	1 cut(s)	297
Psp6I	CCWGG	2 cut(s)	37, 613
PspGI	CCWGG	2 cut(s)	37, 613
PspN4I	GGNNCC	3 cut(s)	243, 622, 675
PspPI	GGNCC	4 cut(s)	131, 183, 287, 674
PsuI	RGATCY	1 cut(s)	633
RsaI	GTAC	3 cut(s)	228, 252, 302
RsaNI	GTAC	3 cut(s)	227, 251, 301
SaqAI	TTAA	5 cut(s)	69, 347, 422, 510, 693
SatI	GCNGC	2 cut(s)	137, 313
Sau3AI	GATC	5 cut(s)	101, 337, 362, 477, 633
Sau96I	GGNCC	4 cut(s)	131, 183, 287, 674
SchI	GAGTC	1 cut(s)	544
ScrFI	CCNGG	2 cut(s)	39, 615
SduI	GDGCHC	1 cut(s)	244
SfaNI	GCATC	3 cut(s)	132, 218, 670
SinI	GGWCC	3 cut(s)	131, 183, 287
SphI	GCATGC	1 cut(s)	578
Sse9I	AATT	6 cut(s)	27, 491, 667, 774, 862, 912
SsiI	CCGC	3 cut(s)	134, 189, 655
SspMI	CTAG	2 cut(s)	90, 596
StyD4I	CCNGG	2 cut(s)	37, 613
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	2 cut(s)	246, 345
TaqI	TCGA	2 cut(s)	100, 212
TaqII	GACCGA	1 cut(s)	171
TasI	AATT	6 cut(s)	27, 491, 667, 774, 862, 912
TatI	WGTACW	2 cut(s)	226, 300
TfiI	GAWTC	3 cut(s)	97, 178, 526
Tru1I	TTAA	5 cut(s)	69, 347, 422, 510, 693
Tru9I	TTAA	5 cut(s)	69, 347, 422, 510, 693
TscAI	CASTG	2 cut(s)	111, 166
TseI	GCWGC	2 cut(s)	136, 312
TspDTI	ATGAA	4 cut(s)	132, 254, 416, 824
TspGWI	ACGGA	2 cut(s)	238, 465
TspRI	CASTG	2 cut(s)	111, 166
Van91I	CCANNNNNTGG	1 cut(s)	630
VpaK11BI	GGWCC	3 cut(s)	131, 183, 287
XagI	CCTNNNNNAGG	1 cut(s)	503
XapI	RAATTY	2 cut(s)	491, 774
XceI	RCATGY	3 cut(s)	227, 301, 578
XmiI	GTMKAC	3 cut(s)	294, 388, 737
XspI	CTAG	2 cut(s)	90, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.