RchiOBHm_Chr1g0345061

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000980
Physical Location & Seq
Forward (+)
37457212 .. 37457795
584 bp
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UTR
Exon/CDS
Intron
PRQ57145

Sequence Viewer

Length: 189 bp
ATGCCATTCGGACTTGGTCCCCGAATCTGTGTTGGTCAACATTTAGCAATAACTGAGCTTAAGGTGATTCTTTCTTTGATTCTATCAAAGTTTTGTTTTTCCCTCTCACCAGCATACCAGCATTCCCCTGCTTATAATCTCTTAACGGAGCCTGAACATGATGTCATTCTCCGTATGAGGAGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

62

Amino Acids

6.97

Weight (kDa)

7.86

Isoelectric Point (pI)

63.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 47 1.5e-12 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 135
AflII CTTAAG 1 cut(s) 59
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 2 cut(s) 76, 99
AvaII GGWCC 1 cut(s) 17
BfrI CTTAAG 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 2 cut(s) 19, 150
BseMII CTCAG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 3
BsmFI GGGAC 1 cut(s) 3
BsmI GAATGC 1 cut(s) 121
BspCNI CTCAG 1 cut(s) 46
BspLI GGNNCC 2 cut(s) 19, 150
BspTI CTTAAG 1 cut(s) 59
BstAFI CTTAAG 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 17
CviAII CATG 1 cut(s) 158
CviJI RGCY 2 cut(s) 58, 151
CviKI_1 RGCY 2 cut(s) 58, 151
DdeI CTNAG 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 17
FaeI CATG 1 cut(s) 161
FaiI YATR 4 cut(s) 115, 135, 159, 176
FaqI GGGAC 1 cut(s) 3
FatI CATG 1 cut(s) 157
Hin1II CATG 1 cut(s) 161
HincII GTYRAC 1 cut(s) 38
HindII GTYRAC 1 cut(s) 38
HinfI GANTC 3 cut(s) 24, 67, 79
HphI GGTGA 2 cut(s) 76, 99
Hpy166II GTNNAC 1 cut(s) 38
Hpy188I TCNGA 1 cut(s) 11
Hpy8I GTNNAC 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 54
Hsp92II CATG 1 cut(s) 161
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 4 cut(s) 123, 131, 141, 165
MnlI CCTC 2 cut(s) 113, 171
MseI TTAA 2 cut(s) 60, 143
MspCI CTTAAG 1 cut(s) 59
Mva1269I GAATGC 1 cut(s) 121
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 2 cut(s) 19, 150
PctI GAATGC 1 cut(s) 121
PfeI GAWTC 3 cut(s) 24, 67, 79
PflFI GACNNNGTC 1 cut(s) 15
PsiI TTATAA 1 cut(s) 135
PspN4I GGNNCC 2 cut(s) 19, 150
PspPI GGNCC 1 cut(s) 17
PsyI GACNNNGTC 1 cut(s) 15
SaqAI TTAA 2 cut(s) 60, 143
Sau96I GGNCC 1 cut(s) 17
SetI ASST 2 cut(s) 60, 66
SgeI CNNG 7 cut(s) 26, 33, 122, 130, 140, 164, 170
SinI GGWCC 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
TfiI GAWTC 3 cut(s) 24, 67, 79
Tru1I TTAA 2 cut(s) 60, 143
Tru9I TTAA 2 cut(s) 60, 143
TspGWI ACGGA 2 cut(s) 161, 161
Tth111I GACNNNGTC 1 cut(s) 15
Vha464I CTTAAG 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.