Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000980

Physical Location & Seq

Genomic Coordinates Forward (+)

5522413 .. 5524626

Gene Structure 2214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g09311.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGGTAAAGGAGTATGGTCCAGTATTCACGTACGCCACAGGCAGCCATCAATACCTCATTACCTTGTTATCAGCGATCCACATATAGTAAAGGAGATTAGAGTGCGCAACGCCACGGATTTGTGTAGACCAGCATATATGAATAAGAACTTCTACGCTTTAACAGGTGATAGCATTTTTCTCACCGACGGAGAAAAGTGGGCATACCAGAGGAAAGTTATCGCCCCTGAATTATACCATGACAAGGCTAAGCTGAAGGCTTTGTCTAGCCAGGGTTGTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

95

Amino Acids

10.72

Weight (kDa)

9.55

Isoelectric Point (pI)

50.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000980)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g09064 FvH4_6g09311 FvH4_6g09311 FvH4_6g09320 FvH4_6g09321
malus_domestica	MD04G1178700.v1.1 MD04G1178800.v1.1
prunus_persica	Prupe.6G298600_v2.0.a1 Prupe.6G298700_v2.0.a1 Prupe.6G298700_v2.0.a1
pyrus_communis	pycom04g15800 pycom07g07860
rosa_chinensis	RchiOBHm_Chr1g0344961 RchiOBHm_Chr1g0345061 RchiOBHm_Chr3g0459711 RchiOBHm_Chr3g0459721 RchiOBHm_Chr3g0459861 RchiOBHm_Chr3g0459871 RchiOBHm_Chr7g0204441
rosa_laevigata	RLG00000003461 RLG00000025055 RLG00000025064 RLG00000025065
rosa_multiflora	Rmu_sc0000240.1_g000030 Rmu_sc0000240.1_g000031 Rmu_sc0000240.1_g000041 Rmu_sc0000240.1_g000042 Rmu_ssc0000443.1_g000007
rosa_roxburghii	Rroxscaffold_3G00253100 Rroxscaffold_4G00309460 Rroxscaffold_6G00419950 Rroxscaffold_6G00420030 Rroxscaffold_6G00420040 Rroxscaffold_6G00420050
rosa_rugosa	Rorug01G0374300 Rorug03G0037700 Rorug03G0037800 Rorug03G0038100 Rorug03G0038100 Rorug07G0084000 Rorug07G0084000 Rorug07G0084100
rosa_samantha	Rh2AG299100 Rh2DG322700 Rh2DG322800 Rh3AG096200 Rh3AG096300 Rh3AG097200 Rh3BG098900 Rh3BG099000 Rh3BG099900 Rh3CG100800 Rh3CG100900 Rh3CG101700 Rh3CG101800 Rh3DG100200 Rh3DG101400 Rh3DG101500 Rh7AG213700 Rh7BG211500 Rh7CG226500 Rh7DG220900
rosa_wichuraiana	Rw7G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	127
AclWI	GGATC	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	275
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
AlwI	GGATC	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	43
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	18
AsuHPI	GGTGA	2 cut(s)	175, 179
AvaII	GGWCC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	1 cut(s)	55
BciT130I	CCWGG	1 cut(s)	272
BfaI	CTAG	1 cut(s)	267
BisI	GCNGC	1 cut(s)	44
BlpI	GCTNAGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	272
Bpu1102I	GCTNAGC	1 cut(s)	249
BsaAI	YACGTR	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	114, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	2 cut(s)	114, 271
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseNI	ACTGG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	55
BsiWI	CGTACG	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	76
Bsp1720I	GCTNAGC	1 cut(s)	249
BspPI	GGATC	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	21
BssECI	CCNNGG	2 cut(s)	114, 271
BssMI	GATC	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	272
BstBAI	YACGTR	1 cut(s)	31
BstDEI	CTNAG	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstNI	CCWGG	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	55
BstXI	CCANNNNNNTGG	1 cut(s)	278
BtgI	CCRYGG	1 cut(s)	114
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	1 cut(s)	239
CviJI	RGCY	5 cut(s)	46, 248, 253, 260, 270
CviKI_1	RGCY	5 cut(s)	46, 248, 253, 260, 270
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	270
FaeI	CATG	1 cut(s)	242
FaiI	YATR	9 cut(s)	16, 84, 86, 136, 138, 140, 205, 235, 240
FatI	CATG	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	1 cut(s)	267
FspI	TGCGCA	1 cut(s)	107
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	44
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	242
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HphI	GGTGA	2 cut(s)	175, 179
Hpy166II	GTNNAC	1 cut(s)	128
Hpy8I	GTNNAC	1 cut(s)	128
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	30
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	242
HspAI	GCGC	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	76
LpnPI	CCDG	7 cut(s)	25, 34, 144, 150, 221, 240, 257
Lsp1109I	GCAGC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	30
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MluCI	AATT	1 cut(s)	230
MnlI	CCTC	2 cut(s)	66, 204
MseI	TTAA	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	272
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	242
NsbI	TGCGCA	1 cut(s)	107
Pfl23II	CGTACG	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	45
Ppu21I	YACGTR	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PspLI	CGTACG	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	18
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	272
SetI	ASST	5 cut(s)	33, 58, 66, 169, 255
SinI	GGWCC	1 cut(s)	18
Sse9I	AATT	1 cut(s)	230
SspMI	CTAG	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	270
TaiI	ACGT	1 cut(s)	33
TasI	AATT	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TseI	GCWGC	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	155
TspGWI	ACGGA	2 cut(s)	131, 204
VpaK11BI	GGWCC	1 cut(s)	18
XmiI	GTMKAC	1 cut(s)	127
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.