Rh3DG101400

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000980
Physical Location & Seq
Reverse (-)
8077658 .. 8077990
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG101400.1

Sequence Viewer

Length: 333 bp
ATGGTTACATGGATGATTATGCATCTGAAAATGCAGCTAACAATGGTGATTCAAGAGAGTCTGCGTCTTTATCCACCAGCAACAATAACAGCCAAGCATGCTTTAGCAGACATAAAACTAGGGGAGCTTGATGTGCCAGGAGGCACCAACATATGGATCTTCGCACACAGATTGCACCGTGACCCTGAAAATTGGGGGCCAGATGCTAATGAGTTTAAGCCAGAGAGATTTGCAAATGGGGTTTCCAAATCGTGCAAGTATACCCAAGCATATGTGCCATTTGGTTTCGGGGCTCGAATTTGCATAGGGCAGATTGCCAGAACTTTGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

110

Amino Acids

12.46

Weight (kDa)

9.06

Isoelectric Point (pI)

28.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 13 - 104 1.2e-27 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 153
AccI GTMKAC 1 cut(s) 260
AclWI GGATC 1 cut(s) 164
AcsI RAATTY 1 cut(s) 297
AfiI CCNNNNNNNGG 1 cut(s) 153
AgsI TTSAA 1 cut(s) 53
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 2 cut(s) 37, 127
AluI AGCT 2 cut(s) 37, 127
AlwI GGATC 1 cut(s) 164
AoxI GGCC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 34
ApoI RAATTY 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 58
BanI GGYRCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 295
BbvI GCAGC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 138
BfaI CTAG 1 cut(s) 119
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 138
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 2 cut(s) 145, 198
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 2 cut(s) 31, 193
Bsc4I CCNNNNNNNGG 1 cut(s) 153
BseBI CCWGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 46
BshFI GGCC 1 cut(s) 199
BshNI GGYRCC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 153
BsnI GGCC 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 295
Bsp143I GATC 1 cut(s) 156
BspANI GGCC 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 145, 198
BspPI GGATC 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 143
BssMI GATC 1 cut(s) 156
BssNAI GTATAC 1 cut(s) 261
Bst1107I GTATAC 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 99
BstF5I GGATG 1 cut(s) 18
BstKTI GATC 1 cut(s) 159
BstMBI GATC 1 cut(s) 156
BstMWI GCNNNNNNNGC 2 cut(s) 98, 133
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 136
BstV1I GCAGC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BstZ17I GTATAC 1 cut(s) 261
BsuRI GGCC 1 cut(s) 199
BtsCI GGATG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 197
CseI GACGC 1 cut(s) 53
CviAII CATG 2 cut(s) 9, 98
CviJI RGCY 6 cut(s) 37, 92, 127, 199, 220, 293
CviKI_1 RGCY 6 cut(s) 37, 92, 127, 199, 220, 293
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 295
FaeI CATG 2 cut(s) 12, 101
FatI CATG 2 cut(s) 8, 97
FauNDI CATATG 2 cut(s) 152, 271
FblI GTMKAC 1 cut(s) 260
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 1 cut(s) 25
FriOI GRGCYC 1 cut(s) 295
Fsp4HI GCNGC 1 cut(s) 35
FspBI CTAG 1 cut(s) 119
GluI GCNGC 1 cut(s) 35
HaeIII GGCC 1 cut(s) 199
HgaI GACGC 1 cut(s) 53
Hin1II CATG 2 cut(s) 12, 101
HinfI GANTC 2 cut(s) 49, 58
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 1 cut(s) 261
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 6 cut(s) 22, 34, 175, 233, 255, 303
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 133
Hsp92II CATG 2 cut(s) 12, 101
Kzo9I GATC 1 cut(s) 156
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 6 cut(s) 90, 123, 150, 198, 213, 234
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 2 cut(s) 31, 193
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 2 cut(s) 4, 179
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 1 cut(s) 151
MflI RGATCY 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 2 cut(s) 190, 297
MlyI GAGTC 1 cut(s) 67
MnlI CCTC 1 cut(s) 134
Mph1103I ATGCAT 1 cut(s) 24
MseI TTAA 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 2 cut(s) 98, 133
NdeI CATATG 2 cut(s) 152, 271
NdeII GATC 1 cut(s) 156
NlaIII CATG 2 cut(s) 12, 101
NlaIV GGNNCC 2 cut(s) 145, 198
NmuCI GTSAC 1 cut(s) 179
NsiI ATGCAT 1 cut(s) 24
NspI RCATGY 1 cut(s) 101
PaeI GCATGC 1 cut(s) 101
PfeI GAWTC 1 cut(s) 49
PflMI CCANNNNNTGG 1 cut(s) 153
PkrI GCNGC 1 cut(s) 36
PleI GAGTC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 145, 198
PspPI GGNCC 1 cut(s) 197
PsuI RGATCY 1 cut(s) 156
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 1 cut(s) 156
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 1 cut(s) 295
SetI ASST 2 cut(s) 39, 129
SfaNI GCATC 2 cut(s) 31, 193
SphI GCATGC 1 cut(s) 101
Sse9I AATT 2 cut(s) 190, 297
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 1 cut(s) 295
TasI AATT 2 cut(s) 190, 297
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 179
Van91I CCANNNNNTGG 1 cut(s) 153
XapI RAATTY 1 cut(s) 297
XceI RCATGY 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 260
XspI CTAG 1 cut(s) 119
Zsp2I ATGCAT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.