Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000980

Physical Location & Seq

Genomic Coordinates Reverse (-)

8078364 .. 8079273

Gene Structure 910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG101500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTTTACGAGATTGCTTAACCAGTTATGGCTCAAACCTAGAAGGATTCGATCAGTGCTGTGGAAGCAAGGCATCAGAGGTCCGCAGCCTTCATTTCTTTTCGGAAACACTGCCGAGATGGAGAAGATTCTGTCCACCGCCGATATCACCCAGAAAGCATCGAAAGGTGGGCATGTACAGCACGATTGGGCACCGTCCGTACACCCATTTCTTCATAAATGGGCAGACGAGTATGGTCCTGTATACATGTACTCCACAGGCAGCCAGCAACACCTTGTTGTAAGCGATCCACAGTTAATAAGAGAGCTTAGATCGCACAACTCCATGGATTTGGGTAGACCAACATATATGAATAAGAACTTGCAAGCTTTAACAGGTGATAGCTTTTTGGTCGCTAACGGAGAAAAGTGGGCTTACCAGAGGAAGATCATTGCCCCTGAATTTTTCCTTGACAAGGTTAAGGTATGTGTACGATTCTATATATGTTCTCTAAATTCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

167

Amino Acids

19.27

Weight (kDa)

9.57

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	66 - 152	3e-09	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000980)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g09064 FvH4_6g09311 FvH4_6g09311 FvH4_6g09320 FvH4_6g09321
malus_domestica	MD04G1178700.v1.1 MD04G1178800.v1.1
prunus_persica	Prupe.6G298600_v2.0.a1 Prupe.6G298700_v2.0.a1 Prupe.6G298700_v2.0.a1
pyrus_communis	pycom04g15800 pycom07g07860
rosa_chinensis	RchiOBHm_Chr1g0344961 RchiOBHm_Chr1g0345061 RchiOBHm_Chr3g0459711 RchiOBHm_Chr3g0459721 RchiOBHm_Chr3g0459861 RchiOBHm_Chr3g0459871 RchiOBHm_Chr7g0204441
rosa_laevigata	RLG00000003461 RLG00000025055 RLG00000025064 RLG00000025065
rosa_multiflora	Rmu_sc0000240.1_g000030 Rmu_sc0000240.1_g000031 Rmu_sc0000240.1_g000041 Rmu_sc0000240.1_g000042 Rmu_ssc0000443.1_g000007
rosa_roxburghii	Rroxscaffold_3G00253100 Rroxscaffold_4G00309460 Rroxscaffold_6G00419950 Rroxscaffold_6G00420030 Rroxscaffold_6G00420040 Rroxscaffold_6G00420050
rosa_rugosa	Rorug01G0374300 Rorug03G0037700 Rorug03G0037800 Rorug03G0038100 Rorug03G0038100 Rorug07G0084000 Rorug07G0084000 Rorug07G0084100
rosa_samantha	Rh2AG299100 Rh2DG322700 Rh2DG322800 Rh3AG096200 Rh3AG096300 Rh3AG097200 Rh3BG098900 Rh3BG099000 Rh3BG099900 Rh3CG100800 Rh3CG100900 Rh3CG101700 Rh3CG101800 Rh3DG100200 Rh3DG101400 Rh3DG101500 Rh7AG213700 Rh7BG211500 Rh7CG226500 Rh7DG220900
rosa_wichuraiana	Rw7G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AccI	GTMKAC	2 cut(s)	243, 337
AciI	CCGC	2 cut(s)	83, 138
AclWI	GGATC	1 cut(s)	281
AcsI	RAATTY	2 cut(s)	440, 493
AfaI	GTAC	4 cut(s)	177, 201, 251, 471
AfiI	CCNNNNNNNGG	1 cut(s)	454
AflIII	ACRYGT	1 cut(s)	246
AluBI	AGCT	3 cut(s)	307, 368, 384
AluI	AGCT	3 cut(s)	307, 368, 384
AlwI	GGATC	1 cut(s)	281
ApeKI	GCWGC	2 cut(s)	85, 261
ApoI	RAATTY	2 cut(s)	440, 493
AspS9I	GGNCC	2 cut(s)	80, 236
AsuHPI	GGTGA	2 cut(s)	139, 389
AvaII	GGWCC	2 cut(s)	80, 236
BaeGI	GKGCMC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	190
BbvI	GCAGC	2 cut(s)	97, 273
BccI	CCATC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	39
BisI	GCNGC	2 cut(s)	86, 262
BlsI	GCNGC	2 cut(s)	87, 263
Bme18I	GGWCC	2 cut(s)	80, 236
BmgT120I	GGNCC	2 cut(s)	80, 236
BmiI	GGNNCC	1 cut(s)	192
BmsI	GCATC	2 cut(s)	81, 167
BsaJI	CCNNGG	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	429
BseDI	CCNNGG	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMI	GCAATG	1 cut(s)	429
BseNI	ACTGG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	193
BseXI	GCAGC	2 cut(s)	97, 273
BshNI	GGYRCC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	454
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp1407I	TGTACA	1 cut(s)	175
Bsp143I	GATC	4 cut(s)	50, 286, 311, 426
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	2 cut(s)	83, 138
BspLI	GGNNCC	1 cut(s)	192
BspPI	GGATC	1 cut(s)	281
BspT107I	GGYRCC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	429
BsrGI	TGTACA	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	4 cut(s)	50, 286, 311, 426
BssNAI	GTATAC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	324
Bst1107I	GTATAC	1 cut(s)	244
Bst4CI	ACNGT	2 cut(s)	195, 294
BstAUI	TGTACA	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	266, 366
BstDEI	CTNAG	1 cut(s)	308
BstDSI	CCRYGG	1 cut(s)	324
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstKTI	GATC	4 cut(s)	53, 289, 314, 429
BstMBI	GATC	4 cut(s)	50, 286, 311, 426
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 178, 313
BstNSI	RCATGY	2 cut(s)	176, 250
BstSLI	GKGCMC	1 cut(s)	193
BstV1I	GCAGC	2 cut(s)	97, 273
BstXI	CCANNNNNNTGG	1 cut(s)	331
BstZ17I	GTATAC	1 cut(s)	244
BtgI	CCRYGG	1 cut(s)	324
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	2 cut(s)	60, 108
Cac8I	GCNNGC	2 cut(s)	266, 366
Cfr13I	GGNCC	2 cut(s)	80, 236
Csp6I	GTAC	4 cut(s)	176, 200, 250, 470
CviAII	CATG	3 cut(s)	173, 247, 325
CviJI	RGCY	7 cut(s)	31, 88, 264, 307, 368, 384, 413
CviKI_1	RGCY	7 cut(s)	31, 88, 264, 307, 368, 384, 413
CviQI	GTAC	4 cut(s)	176, 200, 250, 470
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	4 cut(s)	52, 288, 313, 428
DpnII	GATC	4 cut(s)	50, 286, 311, 426
Eco130I	CCWWGG	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	145
Eco47I	GGWCC	2 cut(s)	80, 236
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoRV	GATATC	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	3 cut(s)	176, 250, 328
FatI	CATG	3 cut(s)	172, 246, 324
FblI	GTMKAC	2 cut(s)	243, 337
Fnu4HI	GCNGC	2 cut(s)	86, 262
Fsp4HI	GCNGC	2 cut(s)	86, 262
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	2 cut(s)	86, 262
Hin1II	CATG	3 cut(s)	176, 250, 328
HindIII	AAGCTT	1 cut(s)	366
HinfI	GANTC	3 cut(s)	46, 127, 474
HphI	GGTGA	2 cut(s)	139, 389
Hpy166II	GTNNAC	6 cut(s)	6, 135, 202, 244, 338, 470
Hpy188I	TCNGA	2 cut(s)	77, 104
Hpy8I	GTNNAC	6 cut(s)	6, 135, 202, 244, 338, 470
HpyAV	CCTTC	2 cut(s)	36, 99
HpyCH4III	ACNGT	2 cut(s)	195, 294
HpyCH4V	TGCA	1 cut(s)	364
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 178, 313
HpyF3I	CTNAG	1 cut(s)	308
Hsp92II	CATG	3 cut(s)	176, 250, 328
Kzo9I	GATC	4 cut(s)	50, 286, 311, 426
LpnPI	CCDG	8 cut(s)	35, 164, 243, 252, 278, 360, 431, 450
Lsp1109I	GCAGC	2 cut(s)	97, 273
LweI	GCATC	2 cut(s)	81, 167
MaeI	CTAG	1 cut(s)	39
MalI	GATC	4 cut(s)	52, 288, 313, 428
MboI	GATC	4 cut(s)	50, 286, 311, 426
MboII	GAAGA	3 cut(s)	136, 203, 436
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	2 cut(s)	440, 493
MnlI	CCTC	2 cut(s)	71, 414
MseI	TTAA	5 cut(s)	18, 296, 371, 459, 502
MwoI	GCNNNNNNNGC	3 cut(s)	64, 178, 313
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	4 cut(s)	50, 286, 311, 426
NlaIII	CATG	3 cut(s)	176, 250, 328
NlaIV	GGNNCC	1 cut(s)	192
NmeAIII	GCCGAG	1 cut(s)	139
NspI	RCATGY	2 cut(s)	176, 250
PciI	ACATGT	1 cut(s)	246
PfeI	GAWTC	3 cut(s)	46, 127, 474
PkrI	GCNGC	2 cut(s)	87, 263
PscI	ACATGT	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	2 cut(s)	80, 236
RsaI	GTAC	4 cut(s)	177, 201, 251, 471
RsaNI	GTAC	4 cut(s)	176, 200, 250, 470
SaqAI	TTAA	5 cut(s)	18, 296, 371, 459, 502
SatI	GCNGC	2 cut(s)	86, 262
Sau3AI	GATC	4 cut(s)	50, 286, 311, 426
Sau96I	GGNCC	2 cut(s)	80, 236
SduI	GDGCHC	1 cut(s)	193
SfaNI	GCATC	2 cut(s)	81, 167
SinI	GGWCC	2 cut(s)	80, 236
Sse9I	AATT	2 cut(s)	440, 493
SsiI	CCGC	2 cut(s)	83, 138
SspMI	CTAG	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	2 cut(s)	195, 294
TaqI	TCGA	2 cut(s)	49, 161
TasI	AATT	2 cut(s)	440, 493
TatI	WGTACW	2 cut(s)	175, 249
TfiI	GAWTC	3 cut(s)	46, 127, 474
Tru1I	TTAA	5 cut(s)	18, 296, 371, 459, 502
Tru9I	TTAA	5 cut(s)	18, 296, 371, 459, 502
TscAI	CASTG	2 cut(s)	60, 115
TseI	GCWGC	2 cut(s)	85, 261
TspDTI	ATGAA	3 cut(s)	81, 203, 365
TspGWI	ACGGA	2 cut(s)	187, 414
TspRI	CASTG	2 cut(s)	60, 115
VpaK11BI	GGWCC	2 cut(s)	80, 236
XagI	CCTNNNNNAGG	1 cut(s)	452
XapI	RAATTY	2 cut(s)	440, 493
XceI	RCATGY	2 cut(s)	176, 250
XmiI	GTMKAC	2 cut(s)	243, 337
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.