Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000980

Physical Location & Seq

Genomic Coordinates Reverse (-)

41394848 .. 41397765

Gene Structure 2918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00420050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGAAGTGAACGCATTACCGATATGGTGGTCAGTTTTGTTAATCGGTGTATCAAGCTTGGTAATCAAATTGCTTAACAAGTTGTGGTTCGAGCCTAGAAGGATTCGAACAGTGCTTTCGAAGCAAGGCATTAGAGGACCACGACCCACCTTCCCTTTCGGCAATGTCCCAGAGATGCAGAAGATTCAATCAACCATGATCAACAACACGCATGAAGAAATGGATGGTCAACATCTCAACCACAATTGGCTTTCCTCTGTATTTCCATATATTCATAAATGGGCAAAAGAGTATGGTCCAATATACATGTACTCCACAGGGATCAACCAACACCTATATGTGAGCGATCCGAAGTTGCTAATGGAGATAAAACAGCACAACTCCCTGGATCTGGGTAAACCTACATATCTGGGTAAACCACTCCGGCCCTTGTTAGGTGATGGCCTTCTCCGAACTAATGGAAAACAGTGGGCCGTCCAGAGGAAACTTCTTGCTCCTGAATTCTTCCTTGGCAAAGTTAAGGTTTCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

177

Amino Acids

20.4

Weight (kDa)

9.91

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	88 - 171	7.6e-07	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000980)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g09064 FvH4_6g09311 FvH4_6g09311 FvH4_6g09320 FvH4_6g09321
malus_domestica	MD04G1178700.v1.1 MD04G1178800.v1.1
prunus_persica	Prupe.6G298600_v2.0.a1 Prupe.6G298700_v2.0.a1 Prupe.6G298700_v2.0.a1
pyrus_communis	pycom04g15800 pycom07g07860
rosa_chinensis	RchiOBHm_Chr1g0344961 RchiOBHm_Chr1g0345061 RchiOBHm_Chr3g0459711 RchiOBHm_Chr3g0459721 RchiOBHm_Chr3g0459861 RchiOBHm_Chr3g0459871 RchiOBHm_Chr7g0204441
rosa_laevigata	RLG00000003461 RLG00000025055 RLG00000025064 RLG00000025065
rosa_multiflora	Rmu_sc0000240.1_g000030 Rmu_sc0000240.1_g000031 Rmu_sc0000240.1_g000041 Rmu_sc0000240.1_g000042 Rmu_ssc0000443.1_g000007
rosa_roxburghii	Rroxscaffold_3G00253100 Rroxscaffold_4G00309460 Rroxscaffold_6G00419950 Rroxscaffold_6G00420030 Rroxscaffold_6G00420040 Rroxscaffold_6G00420050
rosa_rugosa	Rorug01G0374300 Rorug03G0037700 Rorug03G0037800 Rorug03G0038100 Rorug03G0038100 Rorug07G0084000 Rorug07G0084000 Rorug07G0084100
rosa_samantha	Rh2AG299100 Rh2DG322700 Rh2DG322800 Rh3AG096200 Rh3AG096300 Rh3AG097200 Rh3BG098900 Rh3BG099000 Rh3BG099900 Rh3CG100800 Rh3CG100900 Rh3CG101700 Rh3CG101800 Rh3DG100200 Rh3DG101400 Rh3DG101500 Rh7AG213700 Rh7BG211500 Rh7CG226500 Rh7DG220900
rosa_wichuraiana	Rw7G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	329, 341, 396
AcsI	RAATTY	1 cut(s)	500
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	3 cut(s)	391, 434, 480
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	384
AjuI	GAANNNNNNNTTGG	2 cut(s)	492, 524
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
AlwI	GGATC	3 cut(s)	329, 341, 396
AoxI	GGCC	3 cut(s)	425, 442, 471
ApoI	RAATTY	1 cut(s)	500
AspS9I	GGNCC	4 cut(s)	137, 296, 426, 471
AsuHPI	GGTGA	1 cut(s)	449
AsuII	TTCGAA	2 cut(s)	106, 119
AvaII	GGWCC	2 cut(s)	137, 296
BccI	CCATC	2 cut(s)	218, 434
BceAI	ACGGC	1 cut(s)	458
BciT130I	CCWGG	1 cut(s)	386
BclI	TGATCA	1 cut(s)	198
BfaI	CTAG	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	386
Bme18I	GGWCC	2 cut(s)	137, 296
BmgT120I	GGNCC	4 cut(s)	137, 296, 426, 471
BmrFI	CCNGG	1 cut(s)	386
BmsI	GCATC	1 cut(s)	165
Bpu14I	TTCGAA	2 cut(s)	106, 119
BsaJI	CCNNGG	2 cut(s)	384, 508
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	3 cut(s)	391, 434, 480
Bse3DI	GCAATG	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	2 cut(s)	384, 508
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	3 cut(s)	391, 434, 480
BseMI	GCAATG	1 cut(s)	169
BshFI	GGCC	3 cut(s)	427, 444, 473
BsiSI	CCGG	1 cut(s)	424
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	3 cut(s)	391, 434, 480
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	3 cut(s)	427, 444, 473
Bsp119I	TTCGAA	2 cut(s)	106, 119
Bsp143I	GATC	4 cut(s)	198, 321, 346, 388
BspANI	GGCC	3 cut(s)	427, 444, 473
BspPI	GGATC	3 cut(s)	329, 341, 396
BspT104I	TTCGAA	2 cut(s)	106, 119
BsrDI	GCAATG	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	384, 508
BssMI	GATC	4 cut(s)	198, 321, 346, 388
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	1 cut(s)	386
Bst4CI	ACNGT	2 cut(s)	112, 468
BstBI	TTCGAA	2 cut(s)	106, 119
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	4 cut(s)	201, 324, 349, 391
BstMBI	GATC	4 cut(s)	198, 321, 346, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	386
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	384
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	3 cut(s)	427, 444, 473
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	117, 473
Cfr13I	GGNCC	4 cut(s)	137, 296, 426, 471
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	3 cut(s)	196, 212, 307
CviJI	RGCY	6 cut(s)	57, 94, 250, 427, 444, 473
CviKI_1	RGCY	6 cut(s)	57, 94, 250, 427, 444, 473
CviQI	GTAC	1 cut(s)	310
DpnI	GATC	4 cut(s)	200, 323, 348, 390
DpnII	GATC	4 cut(s)	198, 321, 346, 388
Eco130I	CCWWGG	1 cut(s)	508
Eco47I	GGWCC	2 cut(s)	137, 296
EcoRI	GAATTC	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	3 cut(s)	199, 215, 310
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	3 cut(s)	195, 211, 306
FbaI	TGATCA	1 cut(s)	198
FokI	GGATG	1 cut(s)	236
FspBI	CTAG	1 cut(s)	96
HaeIII	GGCC	3 cut(s)	427, 444, 473
HapII	CCGG	1 cut(s)	424
Hin1II	CATG	3 cut(s)	199, 215, 310
HincII	GTYRAC	1 cut(s)	230
HindII	GTYRAC	1 cut(s)	230
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	2 cut(s)	103, 184
HpaII	CCGG	1 cut(s)	424
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	4 cut(s)	10, 230, 398, 416
Hpy188I	TCNGA	2 cut(s)	351, 452
Hpy188III	TCNNGA	2 cut(s)	478, 497
Hpy8I	GTNNAC	4 cut(s)	10, 230, 398, 416
HpyAV	CCTTC	3 cut(s)	93, 160, 455
HpyCH4III	ACNGT	2 cut(s)	112, 468
HpyCH4V	TGCA	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
Hsp92II	CATG	3 cut(s)	199, 215, 310
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	4 cut(s)	198, 321, 346, 388
LmnI	GCTCC	1 cut(s)	499
LpnPI	CCDG	9 cut(s)	183, 303, 371, 377, 395, 398, 437, 491, 510
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	1 cut(s)	96
MalI	GATC	4 cut(s)	200, 323, 348, 390
MboI	GATC	4 cut(s)	198, 321, 346, 388
MboII	GAAGA	4 cut(s)	193, 227, 496, 519
MfeI	CAATTG	1 cut(s)	244
MflI	RGATCY	1 cut(s)	388
MluCI	AATT	3 cut(s)	68, 244, 500
MnlI	CCTC	3 cut(s)	128, 265, 474
MseI	TTAA	3 cut(s)	41, 75, 519
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	1 cut(s)	424
MspR9I	CCNGG	1 cut(s)	386
MunI	CAATTG	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	386
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeII	GATC	4 cut(s)	198, 321, 346, 388
NlaIII	CATG	3 cut(s)	199, 215, 310
NspI	RCATGY	1 cut(s)	310
NspV	TTCGAA	2 cut(s)	106, 119
PciI	ACATGT	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	103, 184
PscI	ACATGT	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PspPI	GGNCC	4 cut(s)	137, 296, 426, 471
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	3 cut(s)	41, 75, 519
Sau3AI	GATC	4 cut(s)	198, 321, 346, 388
Sau96I	GGNCC	4 cut(s)	137, 296, 426, 471
ScrFI	CCNGG	1 cut(s)	386
SetI	ASST	6 cut(s)	59, 152, 336, 403, 439, 525
SfaNI	GCATC	1 cut(s)	165
SfuI	TTCGAA	2 cut(s)	106, 119
SinI	GGWCC	2 cut(s)	137, 296
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	3 cut(s)	68, 244, 500
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	2 cut(s)	112, 468
TaqI	TCGA	3 cut(s)	90, 106, 119
TasI	AATT	3 cut(s)	68, 244, 500
TatI	WGTACW	1 cut(s)	309
TfiI	GAWTC	2 cut(s)	103, 184
Tru1I	TTAA	3 cut(s)	41, 75, 519
Tru9I	TTAA	3 cut(s)	41, 75, 519
TscAI	CASTG	2 cut(s)	117, 473
TspDTI	ATGAA	2 cut(s)	228, 263
TspRI	CASTG	2 cut(s)	117, 473
VpaK11BI	GGWCC	2 cut(s)	137, 296
XapI	RAATTY	1 cut(s)	500
XceI	RCATGY	1 cut(s)	310
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.