Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000980

Physical Location & Seq

Genomic Coordinates Forward (+)

7898274 .. 7902864

Gene Structure 4591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG098900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGAAGTGAACGAATTACCGATATGGTGGTCAGTTTTGTTAATCGGTGTATCAAGCTTGGTAATCAAATTGCTTAACAAGTTGTGGTTCGAGCCTAGAAGGATTCGAACAGTGCTCTCGAAGCAAGGCATTAGAGGACCACGACCCACCTTCCCTTTCGGCAATGTCCCAGAGATGCAGAAGATTCAATCAACCATGATCAACAACACGCATGAAGAAATGGATGGTCAACATCTCAACCACAAATGGCTTCCCTCTGTATTTCCGTATATTCATAAATGGGCAAAAGAGTATGGTCCAATATACATGTACTCCACAGGGATCAACCAACACCTATATGTGAGCGATCCGAAGTTGCTAATGGAGATAAAACAGCACAACTCCCTGGATCTGGGTAAACCTACATATCTGGGTAAACCACTCCGGCCCTTGTTAGGTGACGGCCTTCTCCGAACTAATGGAAAACAGTGGGCCGTCCAGAGGAAACTTCTTGCTCCTGAATTCTTCCTCGGCAAAGTTAAGGGCATGGTGGGTGTGATGGAGGAATCTACAACAGCAATGATCAAGAGATGGGATTGTCGTATACTAGAAAGCAAATCAGGCATTGTGGACATGGAAATTGATGACGAGTTGAAGACACTATCCGCAGATATCATATCAAGAGCATGTTTTGGCAGCTCTTACTCCTTTGGAAATCAGATTTTTGAAAAGATTGCTGACATGGTGGAAATTTATGGCAAACCAAGTTTACAATTTGGCTTTCTTAATTTCAGCTGGTTTCTTCCTAACAAGAAGGTATGGAATCTAAGGAAAGAAGTGGACTCTATGTTGCTCAAGTTGGTGACGGATCGCCAGGTTGAAAGACAATCGGGTGGTGCAACAGAAAATGACCTATTACAAATGCTACTCGATATTGCTTCTACCAACACTGACATTCCTGCGCGTAGAAGAGAAACTTTCGTTCTAGACAATTGTAGAAATATCTACTTTGCAAGCTCTGCAACCACTTCTCTTACGGAATCATGGACCTTGATGCTTCTGTCATTGCATCCGGAATGGCAGGACCGCATTCGTGCGGAGATCATTGAGGTTTGTGGGGTTCTGAATAAACTCCATCATTCCTTGCACGACATGGATATGTTGCGAAAGTTCAAAGTGGTACTAATTCCTCGAATTCTTATACATGTTTCATATGCATTTACTACAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

403

Amino Acids

46.48

Weight (kDa)

8.96

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	88 - 367	2e-32	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000980)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g09064 FvH4_6g09311 FvH4_6g09311 FvH4_6g09320 FvH4_6g09321
malus_domestica	MD04G1178700.v1.1 MD04G1178800.v1.1
prunus_persica	Prupe.6G298600_v2.0.a1 Prupe.6G298700_v2.0.a1 Prupe.6G298700_v2.0.a1
pyrus_communis	pycom04g15800 pycom07g07860
rosa_chinensis	RchiOBHm_Chr1g0344961 RchiOBHm_Chr1g0345061 RchiOBHm_Chr3g0459711 RchiOBHm_Chr3g0459721 RchiOBHm_Chr3g0459861 RchiOBHm_Chr3g0459871 RchiOBHm_Chr7g0204441
rosa_laevigata	RLG00000003461 RLG00000025055 RLG00000025064 RLG00000025065
rosa_multiflora	Rmu_sc0000240.1_g000030 Rmu_sc0000240.1_g000031 Rmu_sc0000240.1_g000041 Rmu_sc0000240.1_g000042 Rmu_ssc0000443.1_g000007
rosa_roxburghii	Rroxscaffold_3G00253100 Rroxscaffold_4G00309460 Rroxscaffold_6G00419950 Rroxscaffold_6G00420030 Rroxscaffold_6G00420040 Rroxscaffold_6G00420050
rosa_rugosa	Rorug01G0374300 Rorug03G0037700 Rorug03G0037800 Rorug03G0038100 Rorug03G0038100 Rorug07G0084000 Rorug07G0084000 Rorug07G0084100
rosa_samantha	Rh2AG299100 Rh2DG322700 Rh2DG322800 Rh3AG096200 Rh3AG096300 Rh3AG097200 Rh3BG098900 Rh3BG099000 Rh3BG099900 Rh3CG100800 Rh3CG100900 Rh3CG101700 Rh3CG101800 Rh3DG100200 Rh3DG101400 Rh3DG101500 Rh7AG213700 Rh7BG211500 Rh7CG226500 Rh7DG220900
rosa_wichuraiana	Rw7G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	583
AccII	CGCG	1 cut(s)	943
AccIII	TCCGGA	1 cut(s)	1051
AciI	CCGC	3 cut(s)	645, 1066, 1076
AclWI	GGATC	4 cut(s)	329, 341, 396, 855
AcsI	RAATTY	3 cut(s)	500, 729, 1173
AfaI	GTAC	2 cut(s)	311, 1161
AfiI	CCNNNNNNNGG	3 cut(s)	391, 434, 480
AflIII	ACRYGT	2 cut(s)	306, 1183
AgsI	TTSAA	5 cut(s)	188, 634, 707, 860, 1153
AjnI	CCWGG	2 cut(s)	384, 852
AluBI	AGCT	4 cut(s)	57, 678, 774, 996
AluI	AGCT	4 cut(s)	57, 678, 774, 996
Alw21I	GWGCWC	1 cut(s)	117
AlwI	GGATC	4 cut(s)	329, 341, 396, 855
Aor13HI	TCCGGA	1 cut(s)	1051
AoxI	GGCC	3 cut(s)	425, 442, 471
ApeKI	GCWGC	1 cut(s)	675
ApoI	RAATTY	3 cut(s)	500, 729, 1173
AspLEI	GCGC	1 cut(s)	943
AspS9I	GGNCC	6 cut(s)	137, 296, 426, 471, 1026, 1063
AsuHPI	GGTGA	2 cut(s)	449, 853
AsuII	TTCGAA	1 cut(s)	106
AvaII	GGWCC	4 cut(s)	137, 296, 1026, 1063
BbsI	GAAGAC	1 cut(s)	641
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	687
BccI	CCATC	4 cut(s)	218, 532, 564, 1122
BceAI	ACGGC	2 cut(s)	457, 458
BciT130I	CCWGG	2 cut(s)	386, 854
BclI	TGATCA	2 cut(s)	198, 561
BfaI	CTAG	3 cut(s)	96, 587, 965
BisI	GCNGC	1 cut(s)	676
BlsI	GCNGC	1 cut(s)	677
Bme1390I	CCNGG	2 cut(s)	386, 854
Bme18I	GGWCC	4 cut(s)	137, 296, 1026, 1063
BmgT120I	GGNCC	6 cut(s)	137, 296, 426, 471, 1026, 1063
BmrFI	CCNGG	2 cut(s)	386, 854
BmsI	GCATC	3 cut(s)	165, 1023, 1057
BpiI	GAAGAC	1 cut(s)	641
Bpu14I	TTCGAA	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	818
BsaJI	CCNNGG	2 cut(s)	384, 508
BsaWI	WCCGGW	1 cut(s)	1051
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	3 cut(s)	391, 434, 480
Bse3DI	GCAATG	3 cut(s)	169, 564, 1043
BseAI	TCCGGA	1 cut(s)	1051
BseBI	CCWGG	2 cut(s)	386, 854
BseDI	CCNNGG	2 cut(s)	384, 508
BseGI	GGATG	2 cut(s)	229, 1048
BseLI	CCNNNNNNNGG	3 cut(s)	391, 434, 480
BseMI	GCAATG	3 cut(s)	169, 564, 1043
BseXI	GCAGC	1 cut(s)	687
Bsh1236I	CGCG	1 cut(s)	943
BshFI	GGCC	3 cut(s)	427, 444, 473
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	424, 1052
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	3 cut(s)	391, 434, 480
BsmFI	GGGAC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	1068
BsnI	GGCC	3 cut(s)	427, 444, 473
Bsp119I	TTCGAA	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp13I	TCCGGA	1 cut(s)	1051
Bsp143I	GATC	7 cut(s)	198, 321, 346, 388, 561, 847, 1080
BspACI	CCGC	3 cut(s)	645, 1066, 1076
BspANI	GGCC	3 cut(s)	427, 444, 473
BspEI	TCCGGA	1 cut(s)	1051
BspFNI	CGCG	1 cut(s)	943
BspPI	GGATC	4 cut(s)	329, 341, 396, 855
BspT104I	TTCGAA	1 cut(s)	106
BsrDI	GCAATG	3 cut(s)	169, 564, 1043
BssECI	CCNNGG	2 cut(s)	384, 508
BssMI	GATC	7 cut(s)	198, 321, 346, 388, 561, 847, 1080
BssNAI	GTATAC	1 cut(s)	584
Bst1107I	GTATAC	1 cut(s)	584
Bst2UI	CCWGG	2 cut(s)	386, 854
Bst4CI	ACNGT	2 cut(s)	112, 468
Bst6I	CTCTTC	1 cut(s)	943
BstAPI	GCANNNNNTGC	1 cut(s)	998
BstBI	TTCGAA	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	994
BstDEI	CTNAG	1 cut(s)	806
BstF5I	GGATG	2 cut(s)	229, 1048
BstFNI	CGCG	1 cut(s)	943
BstHHI	GCGC	1 cut(s)	943
BstKTI	GATC	7 cut(s)	201, 324, 349, 391, 564, 850, 1083
BstMBI	GATC	7 cut(s)	198, 321, 346, 388, 561, 847, 1080
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 600, 998
BstNI	CCWGG	2 cut(s)	386, 854
BstNSI	RCATGY	3 cut(s)	310, 669, 1187
BstSCI	CCNGG	2 cut(s)	384, 852
BstUI	CGCG	1 cut(s)	943
BstV1I	GCAGC	1 cut(s)	687
BstV2I	GAAGAC	1 cut(s)	641
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BstZ17I	GTATAC	1 cut(s)	584
BsuRI	GGCC	3 cut(s)	427, 444, 473
BtsCI	GGATG	2 cut(s)	229, 1048
BtsIMutI	CAGTG	3 cut(s)	117, 473, 927
Cac8I	GCNNGC	1 cut(s)	994
CfoI	GCGC	1 cut(s)	943
Cfr13I	GGNCC	6 cut(s)	137, 296, 426, 471, 1026, 1063
Csp6I	GTAC	2 cut(s)	310, 1160
CviQI	GTAC	2 cut(s)	310, 1160
DdeI	CTNAG	1 cut(s)	806
DpnI	GATC	7 cut(s)	200, 323, 348, 390, 563, 849, 1082
DpnII	GATC	7 cut(s)	198, 321, 346, 388, 561, 847, 1080
Eam1104I	CTCTTC	1 cut(s)	943
EarI	CTCTTC	1 cut(s)	943
Eco32I	GATATC	1 cut(s)	652
Eco47I	GGWCC	4 cut(s)	137, 296, 1026, 1063
EcoRI	GAATTC	2 cut(s)	500, 1173
EcoRII	CCWGG	2 cut(s)	384, 852
EcoRV	GATATC	1 cut(s)	652
EcoT22I	ATGCAT	1 cut(s)	1198
FalI	AAGNNNNNCTT	2 cut(s)	940, 972
FaqI	GGGAC	1 cut(s)	152
FauNDI	CATATG	1 cut(s)	1192
FbaI	TGATCA	2 cut(s)	198, 561
FblI	GTMKAC	1 cut(s)	583
Fnu4HI	GCNGC	1 cut(s)	676
FokI	GGATG	2 cut(s)	236, 1035
Fsp4HI	GCNGC	1 cut(s)	676
FspBI	CTAG	3 cut(s)	96, 587, 965
GlaI	GCGC	1 cut(s)	942
GluI	GCNGC	1 cut(s)	676
HaeIII	GGCC	3 cut(s)	427, 444, 473
HapII	CCGG	2 cut(s)	424, 1052
HhaI	GCGC	1 cut(s)	943
Hin6I	GCGC	1 cut(s)	941
HinP1I	GCGC	1 cut(s)	941
HincII	GTYRAC	1 cut(s)	230
HindII	GTYRAC	1 cut(s)	230
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	6 cut(s)	103, 184, 545, 802, 821, 1019
HpaII	CCGG	2 cut(s)	424, 1052
HphI	GGTGA	2 cut(s)	449, 853
Hpy166II	GTNNAC	8 cut(s)	10, 230, 398, 416, 584, 610, 749, 820
Hpy188I	TCNGA	4 cut(s)	351, 452, 699, 1104
Hpy188III	TCNNGA	7 cut(s)	118, 478, 497, 565, 660, 965, 1052
Hpy8I	GTNNAC	8 cut(s)	10, 230, 398, 416, 584, 610, 749, 820
HpyAV	CCTTC	4 cut(s)	93, 160, 455, 787
HpyCH4III	ACNGT	2 cut(s)	112, 468
HpyCH4V	TGCA	7 cut(s)	178, 878, 992, 1001, 1048, 1126, 1196
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 600, 998
HpyF3I	CTNAG	1 cut(s)	806
HspAI	GCGC	1 cut(s)	941
Kpn2I	TCCGGA	1 cut(s)	1051
Ksp22I	TGATCA	2 cut(s)	198, 561
Kzo9I	GATC	7 cut(s)	198, 321, 346, 388, 561, 847, 1080
LmnI	GCTCC	1 cut(s)	499
Lsp1109I	GCAGC	1 cut(s)	687
LweI	GCATC	3 cut(s)	165, 1023, 1057
MaeI	CTAG	3 cut(s)	96, 587, 965
MaeIII	GTNAC	2 cut(s)	437, 841
MalI	GATC	7 cut(s)	200, 323, 348, 390, 563, 849, 1082
MboI	GATC	7 cut(s)	198, 321, 346, 388, 561, 847, 1080
MboII	GAAGA	6 cut(s)	193, 227, 496, 646, 773, 960
MfeI	CAATTG	1 cut(s)	970
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	117
MlyI	GAGTC	1 cut(s)	815
MnlI	CCTC	7 cut(s)	128, 265, 474, 518, 535, 1081, 1179
Mph1103I	ATGCAT	1 cut(s)	1198
MroI	TCCGGA	1 cut(s)	1051
MseI	TTAA	4 cut(s)	41, 75, 519, 765
MslI	CAYNNNNRTG	2 cut(s)	336, 1136
MspA1I	CMGCKG	1 cut(s)	774
MspI	CCGG	2 cut(s)	424, 1052
MspR9I	CCNGG	2 cut(s)	386, 854
MunI	CAATTG	1 cut(s)	970
Mva1269I	GAATGC	1 cut(s)	1068
MvaI	CCWGG	2 cut(s)	386, 854
MvnI	CGCG	1 cut(s)	943
MwoI	GCNNNNNNNGC	3 cut(s)	121, 600, 998
NdeI	CATATG	1 cut(s)	1192
NdeII	GATC	7 cut(s)	198, 321, 346, 388, 561, 847, 1080
NmeAIII	GCCGAG	1 cut(s)	489
NmuCI	GTSAC	2 cut(s)	437, 841
NsiI	ATGCAT	1 cut(s)	1198
NspI	RCATGY	3 cut(s)	310, 669, 1187
NspV	TTCGAA	1 cut(s)	106
PciI	ACATGT	2 cut(s)	306, 1183
PctI	GAATGC	1 cut(s)	1068
PfeI	GAWTC	5 cut(s)	103, 184, 545, 802, 1019
PkrI	GCNGC	1 cut(s)	677
PleI	GAGTC	1 cut(s)	815
PpsI	GAGTC	1 cut(s)	815
PscI	ACATGT	2 cut(s)	306, 1183
Psp6I	CCWGG	2 cut(s)	384, 852
PspGI	CCWGG	2 cut(s)	384, 852
PspPI	GGNCC	6 cut(s)	137, 296, 426, 471, 1026, 1063
PsuI	RGATCY	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	774
RsaI	GTAC	2 cut(s)	311, 1161
RsaNI	GTAC	2 cut(s)	310, 1160
RseI	CAYNNNNRTG	2 cut(s)	336, 1136
SaqAI	TTAA	4 cut(s)	41, 75, 519, 765
SatI	GCNGC	1 cut(s)	676
Sau3AI	GATC	7 cut(s)	198, 321, 346, 388, 561, 847, 1080
Sau96I	GGNCC	6 cut(s)	137, 296, 426, 471, 1026, 1063
SchI	GAGTC	1 cut(s)	815
ScrFI	CCNGG	2 cut(s)	386, 854
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	3 cut(s)	165, 1023, 1057
SfuI	TTCGAA	1 cut(s)	106
SinI	GGWCC	4 cut(s)	137, 296, 1026, 1063
SmiMI	CAYNNNNRTG	2 cut(s)	336, 1136
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
SsiI	CCGC	3 cut(s)	645, 1066, 1076
SspMI	CTAG	3 cut(s)	96, 587, 965
StyD4I	CCNGG	2 cut(s)	384, 852
TaaI	ACNGT	2 cut(s)	112, 468
TaqI	TCGA	5 cut(s)	90, 106, 119, 909, 1171
TatI	WGTACW	1 cut(s)	309
TfiI	GAWTC	5 cut(s)	103, 184, 545, 802, 1019
Tru1I	TTAA	4 cut(s)	41, 75, 519, 765
Tru9I	TTAA	4 cut(s)	41, 75, 519, 765
TscAI	CASTG	3 cut(s)	117, 473, 934
TseFI	GTSAC	2 cut(s)	437, 841
TseI	GCWGC	1 cut(s)	675
Tsp45I	GTSAC	2 cut(s)	437, 841
TspDTI	ATGAA	3 cut(s)	228, 263, 1179
TspGWI	ACGGA	3 cut(s)	255, 860, 1031
TspRI	CASTG	3 cut(s)	117, 473, 934
VpaK11BI	GGWCC	4 cut(s)	137, 296, 1026, 1063
XapI	RAATTY	3 cut(s)	500, 729, 1173
XbaI	TCTAGA	1 cut(s)	964
XceI	RCATGY	3 cut(s)	310, 669, 1187
XmiI	GTMKAC	1 cut(s)	583
XspI	CTAG	3 cut(s)	96, 587, 965
Zsp2I	ATGCAT	1 cut(s)	1198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.