Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000980

Physical Location & Seq

Genomic Coordinates Reverse (-)

31245668 .. 31246543

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00309460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTTTCGAAACATGAAAACATTGAATATGGTGATTCAAGAAACATTGCGCCTCTATCCCCCAGCAACATATGTCATAAGGCAAGCCATGGAAGATATTAAATTCAAAGACATTCTAATCCCAAAAGGAATGAATCTTCAGATTCCAATCTCAATACTCCAGCAACAACATGAACTTTGGGGCCCTGATGCTCTTGAGTTCAATCCGAAAAGATTCGAGCATGGAATTCTTGGGGCTTGCAAGGTTCCTCAGGCTTATATGCCGTTTGGAGTTGGTGCTCGCATTTGTGCTGGCCAACACCTAGCCATGACAGAATTGAAGGTGATTCTGTCTCTCATTTTATCCAAGTTTTCTTTCTCACTCTCTCCTACTTACCAACACTGCCCAGCTTTTAAGCTAGTTATTGAACCTGAACATGGAGTAACTCGATCTCCATATTCGGAGATTGTGAACCTCTTTCTTTTCTTTTCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0010268 GO:0010817 GO:0016128 GO:0016131 GO:0016491 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

158

Amino Acids

18.04

Weight (kDa)

8.71

Isoelectric Point (pI)

56.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 132	1.4e-38	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000980)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g09064 FvH4_6g09311 FvH4_6g09311 FvH4_6g09320 FvH4_6g09321
malus_domestica	MD04G1178700.v1.1 MD04G1178800.v1.1
prunus_persica	Prupe.6G298600_v2.0.a1 Prupe.6G298700_v2.0.a1 Prupe.6G298700_v2.0.a1
pyrus_communis	pycom04g15800 pycom07g07860
rosa_chinensis	RchiOBHm_Chr1g0344961 RchiOBHm_Chr1g0345061 RchiOBHm_Chr3g0459711 RchiOBHm_Chr3g0459721 RchiOBHm_Chr3g0459861 RchiOBHm_Chr3g0459871 RchiOBHm_Chr7g0204441
rosa_laevigata	RLG00000003461 RLG00000025055 RLG00000025064 RLG00000025065
rosa_multiflora	Rmu_sc0000240.1_g000030 Rmu_sc0000240.1_g000031 Rmu_sc0000240.1_g000041 Rmu_sc0000240.1_g000042 Rmu_ssc0000443.1_g000007
rosa_roxburghii	Rroxscaffold_3G00253100 Rroxscaffold_4G00309460 Rroxscaffold_6G00419950 Rroxscaffold_6G00420030 Rroxscaffold_6G00420040 Rroxscaffold_6G00420050
rosa_rugosa	Rorug01G0374300 Rorug03G0037700 Rorug03G0037800 Rorug03G0038100 Rorug03G0038100 Rorug07G0084000 Rorug07G0084000 Rorug07G0084100
rosa_samantha	Rh2AG299100 Rh2DG322700 Rh2DG322800 Rh3AG096200 Rh3AG096300 Rh3AG097200 Rh3BG098900 Rh3BG099000 Rh3BG099900 Rh3CG100800 Rh3CG100900 Rh3CG101700 Rh3CG101800 Rh3DG100200 Rh3DG101400 Rh3DG101500 Rh7AG213700 Rh7BG211500 Rh7CG226500 Rh7DG220900
rosa_wichuraiana	Rw7G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	2 cut(s)	101, 225
AcuI	CTGAAG	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	416
AgsI	TTSAA	6 cut(s)	25, 38, 106, 202, 319, 407
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AluBI	AGCT	2 cut(s)	389, 397
AluI	AGCT	2 cut(s)	389, 397
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	336
AoxI	GGCC	2 cut(s)	181, 292
ApaI	GGGCCC	1 cut(s)	185
ApoI	RAATTY	2 cut(s)	101, 225
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	2 cut(s)	181, 182
AsuHPI	GGTGA	2 cut(s)	43, 334
AsuII	TTCGAA	1 cut(s)	7
AxyI	CCTNAGG	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	280
BceAI	ACGGC	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	336
BfaI	CTAG	2 cut(s)	302, 398
BmgT120I	GGNCC	2 cut(s)	181, 182
BmiI	GGNNCC	3 cut(s)	182, 183, 246
BmsI	GCATC	1 cut(s)	178
BpmI	CTGGAG	1 cut(s)	143
Bpu14I	TTCGAA	1 cut(s)	7
BpuEI	CTTGAG	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse21I	CCTNAGG	1 cut(s)	249
Bse3DI	GCAATG	1 cut(s)	44
Bse8I	GATNNNNATC	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	87
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseMI	GCAATG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	263
BseSI	GKGCMC	1 cut(s)	185
BseYI	CCCAGC	2 cut(s)	61, 385
BshFI	GGCC	2 cut(s)	183, 294
BsiHKAI	GWGCWC	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	416
BsmAI	GTCTC	1 cut(s)	336
BsnI	GGCC	2 cut(s)	183, 294
Bsp119I	TTCGAA	1 cut(s)	7
Bsp120I	GGGCCC	1 cut(s)	181
Bsp1286I	GDGCHC	2 cut(s)	185, 280
Bsp143I	GATC	1 cut(s)	428
Bsp19I	CCATGG	1 cut(s)	87
BspANI	GGCC	2 cut(s)	183, 294
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	3 cut(s)	182, 183, 246
BspT104I	TTCGAA	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	1 cut(s)	428
BssT1I	CCWWGG	1 cut(s)	87
BstBI	TTCGAA	1 cut(s)	7
BstC8I	GCNNGC	4 cut(s)	84, 238, 280, 292
BstDEI	CTNAG	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	1 cut(s)	431
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	1 cut(s)	428
BstSLI	GKGCMC	1 cut(s)	185
Bsu36I	CCTNAGG	1 cut(s)	249
BsuRI	GGCC	2 cut(s)	183, 294
BtgI	CCRYGG	1 cut(s)	87
BtsI	GCAGTG	1 cut(s)	379
BtsIMutI	CAGTG	1 cut(s)	379
Cac8I	GCNNGC	4 cut(s)	84, 238, 280, 292
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	181, 182
CviAII	CATG	6 cut(s)	13, 88, 170, 221, 307, 416
CviJI	RGCY	8 cut(s)	86, 183, 236, 254, 294, 305, 389, 397
CviKI_1	RGCY	8 cut(s)	86, 183, 236, 254, 294, 305, 389, 397
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	1 cut(s)	430
DpnII	GATC	1 cut(s)	428
EaeI	YGGCCR	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	185
Eco57I	CTGAAG	1 cut(s)	122
Eco81I	CCTNAGG	1 cut(s)	249
EcoO109I	RGGNCCY	2 cut(s)	181, 182
EcoRI	GAATTC	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	6 cut(s)	16, 91, 173, 224, 310, 419
FatI	CATG	6 cut(s)	12, 87, 169, 220, 306, 415
FauNDI	CATATG	1 cut(s)	70
FriOI	GRGCYC	1 cut(s)	185
FspBI	CTAG	2 cut(s)	302, 398
GlaI	GCGC	1 cut(s)	50
GsaI	CCCAGC	2 cut(s)	65, 389
GsuI	CTGGAG	1 cut(s)	143
HaeIII	GGCC	2 cut(s)	183, 294
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	6 cut(s)	16, 91, 173, 224, 310, 419
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HinfI	GANTC	5 cut(s)	34, 133, 142, 213, 325
HphI	GGTGA	2 cut(s)	43, 334
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	3 cut(s)	141, 207, 442
Hpy188III	TCNNGA	2 cut(s)	38, 194
Hpy8I	GTNNAC	1 cut(s)	451
HpyAV	CCTTC	1 cut(s)	313
HpyCH4V	TGCA	1 cut(s)	240
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	6 cut(s)	16, 91, 173, 224, 310, 419
HspAI	GCGC	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	428
LpnPI	CCDG	7 cut(s)	75, 173, 198, 236, 276, 399, 423
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	2 cut(s)	302, 398
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	1 cut(s)	430
MboI	GATC	1 cut(s)	428
MboII	GAAGA	2 cut(s)	104, 128
MhlI	GDGCHC	2 cut(s)	185, 280
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	3 cut(s)	101, 225, 314
MluNI	TGGCCA	1 cut(s)	294
MnlI	CCTC	3 cut(s)	62, 258, 464
Mox20I	TGGCCA	1 cut(s)	294
MroXI	GAANNNNTTC	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	294
MseI	TTAA	2 cut(s)	99, 393
Msp20I	TGGCCA	1 cut(s)	294
NcoI	CCATGG	1 cut(s)	87
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	1 cut(s)	428
NlaIII	CATG	6 cut(s)	16, 91, 173, 224, 310, 419
NlaIV	GGNNCC	3 cut(s)	182, 183, 246
NspV	TTCGAA	1 cut(s)	7
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	5 cut(s)	34, 133, 142, 213, 325
PspFI	CCCAGC	2 cut(s)	61, 385
PspN4I	GGNNCC	3 cut(s)	182, 183, 246
PspOMI	GGGCCC	1 cut(s)	181
PspPI	GGNCC	2 cut(s)	181, 182
SaqAI	TTAA	2 cut(s)	99, 393
Sau3AI	GATC	1 cut(s)	428
Sau96I	GGNCC	2 cut(s)	181, 182
SduI	GDGCHC	2 cut(s)	185, 280
SetI	ASST	7 cut(s)	246, 303, 324, 391, 399, 412, 456
SfaNI	GCATC	1 cut(s)	178
SfuI	TTCGAA	1 cut(s)	7
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	3 cut(s)	101, 225, 314
SspMI	CTAG	2 cut(s)	302, 398
StyI	CCWWGG	1 cut(s)	87
TaqI	TCGA	3 cut(s)	7, 216, 427
TasI	AATT	3 cut(s)	101, 225, 314
TfiI	GAWTC	5 cut(s)	34, 133, 142, 213, 325
Tru1I	TTAA	2 cut(s)	99, 393
Tru9I	TTAA	2 cut(s)	99, 393
TscAI	CASTG	1 cut(s)	386
TspDTI	ATGAA	3 cut(s)	29, 146, 186
TspRI	CASTG	1 cut(s)	386
XapI	RAATTY	2 cut(s)	101, 225
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	2 cut(s)	302, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.