Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0000980

Physical Location & Seq

Genomic Coordinates Forward (+)

7162145 .. 7162552

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g07860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTTGATTCAAGAAACTTTGCGCCTGTATCCACCAGCAGCATTTGTTGTAAGGCAAGCCTTTGACGACATTGAGCTCAACAACATTCCTGAAATCTGCGGCTCTGATGCCCTTGAATTCAATCCGAAAAGATTTCAGCATGGAATTCTTGGGGCTTTCAAGTATCCCCAGGTTTATATGCCATTTGGATTTGGTCCTAGGATTTGTTTTGGGCAACACTTTGCCGTGACAGAGTTGAAGGTGATTCTGTCTCTTATTCTATCCAAGTTTTGCTTCTCACTCTCGCTTGCATACAAACACCGCCCAGTTTTCAGGTTGGTTATTGAACCTGAACATGGAGTAATCTCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0010268 GO:0010817 GO:0016128 GO:0016131 GO:0016491 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

118

Amino Acids

13.39

Weight (kDa)

7.76

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	36 - 94	3.7e-15	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000980)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g09064 FvH4_6g09311 FvH4_6g09311 FvH4_6g09320 FvH4_6g09321
malus_domestica	MD04G1178700.v1.1 MD04G1178800.v1.1
prunus_persica	Prupe.6G298600_v2.0.a1 Prupe.6G298700_v2.0.a1 Prupe.6G298700_v2.0.a1
pyrus_communis	pycom04g15800 pycom07g07860
rosa_chinensis	RchiOBHm_Chr1g0344961 RchiOBHm_Chr1g0345061 RchiOBHm_Chr3g0459711 RchiOBHm_Chr3g0459721 RchiOBHm_Chr3g0459861 RchiOBHm_Chr3g0459871 RchiOBHm_Chr7g0204441
rosa_laevigata	RLG00000003461 RLG00000025055 RLG00000025064 RLG00000025065
rosa_multiflora	Rmu_sc0000240.1_g000030 Rmu_sc0000240.1_g000031 Rmu_sc0000240.1_g000041 Rmu_sc0000240.1_g000042 Rmu_ssc0000443.1_g000007
rosa_roxburghii	Rroxscaffold_3G00253100 Rroxscaffold_4G00309460 Rroxscaffold_6G00419950 Rroxscaffold_6G00420030 Rroxscaffold_6G00420040 Rroxscaffold_6G00420050
rosa_rugosa	Rorug01G0374300 Rorug03G0037700 Rorug03G0037800 Rorug03G0038100 Rorug03G0038100 Rorug07G0084000 Rorug07G0084000 Rorug07G0084100
rosa_samantha	Rh2AG299100 Rh2DG322700 Rh2DG322800 Rh3AG096200 Rh3AG096300 Rh3AG097200 Rh3BG098900 Rh3BG099000 Rh3BG099900 Rh3CG100800 Rh3CG100900 Rh3CG101700 Rh3CG101800 Rh3DG100200 Rh3DG101400 Rh3DG101500 Rh7AG213700 Rh7BG211500 Rh7CG226500 Rh7DG220900
rosa_wichuraiana	Rw7G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	99, 301
AcsI	RAATTY	2 cut(s)	116, 144
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	6 cut(s)	11, 116, 121, 160, 238, 326
AjnI	CCWGG	1 cut(s)	168
AjuI	GAANNNNNNNTTGG	2 cut(s)	257, 289
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	2 cut(s)	116, 144
AspA2I	CCTAGG	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	194
AvrII	CCTAGG	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	50
BceAI	ACGGC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	170
BciVI	GTATCC	2 cut(s)	39, 174
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	1 cut(s)	198
BfuI	GTATCC	2 cut(s)	39, 174
BisI	GCNGC	2 cut(s)	39, 100
BlnI	CCTAGG	1 cut(s)	197
BlsI	GCNGC	2 cut(s)	40, 101
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	170
BmrI	ACTGGG	1 cut(s)	299
BmsI	GCATC	1 cut(s)	97
BmuI	ACTGGG	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	168, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	168, 197
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseNI	ACTGG	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	78
BspACI	CCGC	2 cut(s)	99, 301
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	168, 197
BssT1I	CCWWGG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	57, 288
BstHHI	GCGC	1 cut(s)	24
BstMAI	GTCTC	1 cut(s)	255
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	50
BsuI	GTATCC	2 cut(s)	39, 174
Cac8I	GCNNGC	2 cut(s)	57, 288
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	194
CviAII	CATG	3 cut(s)	140, 335, 349
CviJI	RGCY	4 cut(s)	59, 76, 102, 155
CviKI_1	RGCY	4 cut(s)	59, 76, 102, 155
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	194
Eco53kI	GAGCTC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	76
EcoRI	GAATTC	2 cut(s)	116, 144
EcoRII	CCWGG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	197
EcoT38I	GRGCYC	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	3 cut(s)	143, 338, 352
FaiI	YATR	6 cut(s)	141, 177, 179, 292, 336, 350
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FatI	CATG	3 cut(s)	139, 334, 348
Fnu4HI	GCNGC	2 cut(s)	39, 100
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	2 cut(s)	39, 100
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	2 cut(s)	39, 100
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	3 cut(s)	143, 338, 352
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HinfI	GANTC	2 cut(s)	7, 244
HphI	GGTGA	1 cut(s)	253
Hpy188I	TCNGA	2 cut(s)	106, 126
Hpy188III	TCNNGA	2 cut(s)	11, 89
HpyAV	CCTTC	1 cut(s)	232
HpyCH4V	TGCA	1 cut(s)	290
Hsp92II	CATG	3 cut(s)	143, 338, 352
HspAI	GCGC	1 cut(s)	22
LpnPI	CCDG	8 cut(s)	38, 48, 102, 155, 182, 298, 318, 342
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	2 cut(s)	116, 144
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
NlaIII	CATG	3 cut(s)	143, 338, 352
NmuCI	GTSAC	1 cut(s)	226
PfeI	GAWTC	2 cut(s)	7, 244
PkrI	GCNGC	2 cut(s)	40, 101
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	78
SatI	GCNGC	2 cut(s)	39, 100
Sau96I	GGNCC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	5 cut(s)	78, 174, 243, 317, 331
SfaNI	GCATC	1 cut(s)	97
SinI	GGWCC	1 cut(s)	194
Sse9I	AATT	2 cut(s)	116, 144
SsiI	CCGC	2 cut(s)	99, 301
SspMI	CTAG	1 cut(s)	198
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	197
TasI	AATT	2 cut(s)	116, 144
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	2 cut(s)	7, 244
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	2 cut(s)	116, 144
XmaJI	CCTAGG	1 cut(s)	197
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.