Rh3CG100800

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000980
Physical Location & Seq
Forward (+)
7991393 .. 8002585
11193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG100800.1

Sequence Viewer

Length: 1242 bp
ATGGAAGTGAACGCATTACCGATATGGTGGTCAGTTTTGTTAATCGGTGTATCAAGCTTGGTAATCAAATTGCTTAACAAGTTGTGGTTCGAGCCTAGAAGGATTCGAACAGTGCTCTCGAAGCAAGGCATTAGAGGACCACGACCCACCTTCCCTTTCGGCAATGTCCCAGAGATGCAGAAGATTCAATCAACCATGATCAACAACACGCATGAAGAAATGGATGGTCAACATCTCAACCACAAATGGCTTCCCTCTGTATTTCCATATATTCATAAATGGGCAAAAGAGTATGGTCCAGTATACATGTACTCCACAGGGATCAACCAACACCTATATGTGAGCGATCCGAAGTTGCTAATGGAGATAAAACAGCACAACTCCCTGGATCTGGGTAAACCAACATATCTGGGTAAACCACTCCGGCCCTTGTTAGGTGATGGCCTTCTCCGAACTAATGGAAAACAGTGGGCCGTCCAGAGGAAACTTCTTGCTCCTGAATTCTTCCTTGGCAAAGTTAAGGGCATGGTGGGTGTGATGGAGGAATCTACAACAGCAATGATCAAGAGATGGGATTGTCGTATACTAGAAAGCAAATCAGGCATTGTGGACATGGAAATTGATGACGAGTTGAAGACGCTATCCGCAGATATCATATCAAGAGCATGTTTTGGCAGCTCTTACTCCTTTGGAAATCAGATTTTTGAAAAGATTGCTGACATGGTGGAGGTTTATGGCAAACCAAGTTTACAATTTGGCTTTCTTAATTTCAGCTGGTTTCTTCCTAACAAGAAGGTATGGAATCTAAGGAAAGAAGTGGACTCTATGTTGCTCAAGTTGGTGACGGATCGCCAGGTTGAAAGACAATCGGGTGGTGCAACAGAAAATGACCTATTACAAATGCTACTCGATATTGCTTCTACCAACACTGACATTCCTGCGCGTAGAAGAGAAACTTTCGTTCTAGACAATTGTAGAAATATCTACTTTGCAAGCTCTGCAACCACTTCTCTTACGGAATCATGGACCTTGATGCTTCTATCATTGCACCCGGAATGGCAGGACCGCATTCGTGCGGAGATCATTGACGTTTGTGGGGTTCTGAATAAACTCCATCATTCCTTGCACGACATGGATATGTTGCGAAAGTTCAAAGTGGAGCAACCAGCACCTGTACGTGAACGATCCGAAGTAATAAATGGAGATAAAACTGCACAACTCCCTGGATTTAAGGTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

413

Amino Acids

47.45

Weight (kDa)

9.05

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 88 - 367 8.1e-32 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 303, 583
AccII CGCG 1 cut(s) 943
AciI CCGC 3 cut(s) 645, 1066, 1076
AclWI GGATC 5 cut(s) 329, 341, 396, 855, 1179
AcsI RAATTY 1 cut(s) 500
AfaI GTAC 2 cut(s) 311, 1176
AfiI CCNNNNNNNGG 3 cut(s) 391, 434, 480
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 5 cut(s) 188, 634, 707, 860, 1153
AjnI CCWGG 3 cut(s) 384, 852, 1222
AjuI GAANNNNNNNTTGG 2 cut(s) 492, 524
AloI GAACNNNNNNTCC 1 cut(s) 1218
AluBI AGCT 4 cut(s) 57, 678, 774, 996
AluI AGCT 4 cut(s) 57, 678, 774, 996
Alw21I GWGCWC 1 cut(s) 117
AlwI GGATC 5 cut(s) 329, 341, 396, 855, 1179
AlwNI CAGNNNCTG 1 cut(s) 1172
AoxI GGCC 3 cut(s) 425, 442, 471
ApeKI GCWGC 1 cut(s) 675
ApoI RAATTY 1 cut(s) 500
AspLEI GCGC 1 cut(s) 943
AspS9I GGNCC 6 cut(s) 137, 296, 426, 471, 1026, 1063
AsuC2I CCSGG 1 cut(s) 1052
AsuHPI GGTGA 2 cut(s) 449, 853
AsuII TTCGAA 1 cut(s) 106
AvaII GGWCC 4 cut(s) 137, 296, 1026, 1063
BbsI GAAGAC 1 cut(s) 641
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 687
BccI CCATC 5 cut(s) 218, 434, 532, 564, 1122
BceAI ACGGC 1 cut(s) 458
BciT130I CCWGG 3 cut(s) 386, 854, 1224
BclI TGATCA 2 cut(s) 198, 561
BcnI CCSGG 1 cut(s) 1052
BfaI CTAG 3 cut(s) 96, 587, 965
BisI GCNGC 1 cut(s) 676
BlsI GCNGC 1 cut(s) 677
Bme1390I CCNGG 4 cut(s) 386, 854, 1052, 1224
Bme18I GGWCC 4 cut(s) 137, 296, 1026, 1063
BmgT120I GGNCC 6 cut(s) 137, 296, 426, 471, 1026, 1063
BmrFI CCNGG 4 cut(s) 386, 854, 1052, 1224
BmsI GCATC 2 cut(s) 165, 1023
BpiI GAAGAC 1 cut(s) 641
Bpu14I TTCGAA 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 818
BpuMI CCSGG 1 cut(s) 1052
BsaAI YACGTR 1 cut(s) 1178
BsaJI CCNNGG 3 cut(s) 384, 508, 1222
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 3 cut(s) 391, 434, 480
Bse1I ACTGG 1 cut(s) 299
Bse3DI GCAATG 3 cut(s) 169, 564, 1043
BseBI CCWGG 3 cut(s) 386, 854, 1224
BseDI CCNNGG 3 cut(s) 384, 508, 1222
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 3 cut(s) 391, 434, 480
BseMI GCAATG 3 cut(s) 169, 564, 1043
BseNI ACTGG 1 cut(s) 299
BseXI GCAGC 1 cut(s) 687
BsgI GTGCAG 1 cut(s) 1197
Bsh1236I CGCG 1 cut(s) 943
BshFI GGCC 3 cut(s) 427, 444, 473
BsiHKAI GWGCWC 1 cut(s) 117
BsiSI CCGG 2 cut(s) 424, 1052
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 3 cut(s) 391, 434, 480
BsmFI GGGAC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 1068
BsnI GGCC 3 cut(s) 427, 444, 473
Bsp119I TTCGAA 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 8 cut(s) 198, 321, 346, 388, 561, 847, 1080, 1184
BspACI CCGC 3 cut(s) 645, 1066, 1076
BspANI GGCC 3 cut(s) 427, 444, 473
BspFNI CGCG 1 cut(s) 943
BspPI GGATC 5 cut(s) 329, 341, 396, 855, 1179
BspT104I TTCGAA 1 cut(s) 106
BsrDI GCAATG 3 cut(s) 169, 564, 1043
BsrI ACTGG 1 cut(s) 299
BssECI CCNNGG 3 cut(s) 384, 508, 1222
BssMI GATC 8 cut(s) 198, 321, 346, 388, 561, 847, 1080, 1184
BssNAI GTATAC 2 cut(s) 304, 584
BssT1I CCWWGG 1 cut(s) 508
Bst1107I GTATAC 2 cut(s) 304, 584
Bst2UI CCWGG 3 cut(s) 386, 854, 1224
Bst4CI ACNGT 2 cut(s) 112, 468
Bst6I CTCTTC 1 cut(s) 943
BstAPI GCANNNNNTGC 1 cut(s) 998
BstBAI YACGTR 1 cut(s) 1178
BstBI TTCGAA 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 994
BstDEI CTNAG 1 cut(s) 806
BstF5I GGATG 1 cut(s) 229
BstFNI CGCG 1 cut(s) 943
BstHHI GCGC 1 cut(s) 943
BstKTI GATC 8 cut(s) 201, 324, 349, 391, 564, 850, 1083, 1187
BstMBI GATC 8 cut(s) 198, 321, 346, 388, 561, 847, 1080, 1184
BstMWI GCNNNNNNNGC 3 cut(s) 121, 600, 998
BstNI CCWGG 3 cut(s) 386, 854, 1224
BstNSI RCATGY 2 cut(s) 310, 669
BstSCI CCNGG 4 cut(s) 384, 852, 1050, 1222
BstUI CGCG 1 cut(s) 943
BstV1I GCAGC 1 cut(s) 687
BstV2I GAAGAC 1 cut(s) 641
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
BstZ17I GTATAC 2 cut(s) 304, 584
BsuRI GGCC 3 cut(s) 427, 444, 473
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 3 cut(s) 117, 473, 927
Cac8I GCNNGC 1 cut(s) 994
CaiI CAGNNNCTG 1 cut(s) 1172
CfoI GCGC 1 cut(s) 943
Cfr13I GGNCC 6 cut(s) 137, 296, 426, 471, 1026, 1063
CseI GACGC 1 cut(s) 646
Csp6I GTAC 2 cut(s) 310, 1175
CviAII CATG 9 cut(s) 196, 212, 307, 526, 613, 666, 721, 1023, 1132
CviQI GTAC 2 cut(s) 310, 1175
DdeI CTNAG 1 cut(s) 806
DpnI GATC 8 cut(s) 200, 323, 348, 390, 563, 849, 1082, 1186
DpnII GATC 8 cut(s) 198, 321, 346, 388, 561, 847, 1080, 1184
Eam1104I CTCTTC 1 cut(s) 943
EarI CTCTTC 1 cut(s) 943
Eco130I CCWWGG 1 cut(s) 508
Eco32I GATATC 1 cut(s) 652
Eco47I GGWCC 4 cut(s) 137, 296, 1026, 1063
EcoRI GAATTC 1 cut(s) 500
EcoRII CCWGG 3 cut(s) 384, 852, 1222
EcoRV GATATC 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 508
ErhI CCWWGG 1 cut(s) 508
FaeI CATG 9 cut(s) 199, 215, 310, 529, 616, 669, 724, 1026, 1135
FalI AAGNNNNNCTT 2 cut(s) 940, 972
FaqI GGGAC 1 cut(s) 152
FatI CATG 9 cut(s) 195, 211, 306, 525, 612, 665, 720, 1022, 1131
FbaI TGATCA 2 cut(s) 198, 561
FblI GTMKAC 2 cut(s) 303, 583
Fnu4HI GCNGC 1 cut(s) 676
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 676
FspBI CTAG 3 cut(s) 96, 587, 965
GlaI GCGC 1 cut(s) 942
GluI GCNGC 1 cut(s) 676
HaeIII GGCC 3 cut(s) 427, 444, 473
HapII CCGG 2 cut(s) 424, 1052
HgaI GACGC 1 cut(s) 646
HhaI GCGC 1 cut(s) 943
Hin1II CATG 9 cut(s) 199, 215, 310, 529, 616, 669, 724, 1026, 1135
Hin6I GCGC 1 cut(s) 941
HinP1I GCGC 1 cut(s) 941
HincII GTYRAC 1 cut(s) 230
HindII GTYRAC 1 cut(s) 230
HindIII AAGCTT 1 cut(s) 55
HinfI GANTC 6 cut(s) 103, 184, 545, 802, 821, 1019
HpaII CCGG 2 cut(s) 424, 1052
HphI GGTGA 2 cut(s) 449, 853
Hpy188I TCNGA 5 cut(s) 351, 452, 699, 1104, 1189
Hpy188III TCNNGA 6 cut(s) 118, 478, 497, 565, 660, 965
HpyAV CCTTC 4 cut(s) 93, 160, 455, 787
HpyCH4III ACNGT 2 cut(s) 112, 468
HpyCH4IV ACGT 2 cut(s) 1089, 1177
HpyCH4V TGCA 7 cut(s) 178, 878, 992, 1001, 1048, 1126, 1214
HpyF10VI GCNNNNNNNGC 3 cut(s) 121, 600, 998
HpyF3I CTNAG 1 cut(s) 806
HpySE526I ACGT 2 cut(s) 1089, 1177
Hsp92II CATG 9 cut(s) 199, 215, 310, 529, 616, 669, 724, 1026, 1135
HspAI GCGC 1 cut(s) 941
Ksp22I TGATCA 2 cut(s) 198, 561
Kzo9I GATC 8 cut(s) 198, 321, 346, 388, 561, 847, 1080, 1184
LmnI GCTCC 2 cut(s) 499, 1159
Lsp1109I GCAGC 1 cut(s) 687
LweI GCATC 2 cut(s) 165, 1023
MaeI CTAG 3 cut(s) 96, 587, 965
MaeII ACGT 2 cut(s) 1089, 1177
MaeIII GTNAC 1 cut(s) 841
MalI GATC 8 cut(s) 200, 323, 348, 390, 563, 849, 1082, 1186
MboI GATC 8 cut(s) 198, 321, 346, 388, 561, 847, 1080, 1184
MboII GAAGA 6 cut(s) 193, 227, 496, 646, 773, 960
MfeI CAATTG 1 cut(s) 970
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 6 cut(s) 68, 500, 618, 752, 766, 970
MlyI GAGTC 1 cut(s) 815
MnlI CCTC 5 cut(s) 128, 265, 474, 535, 721
MseI TTAA 5 cut(s) 41, 75, 519, 765, 1230
MslI CAYNNNNRTG 2 cut(s) 336, 1136
MspA1I CMGCKG 1 cut(s) 774
MspI CCGG 2 cut(s) 424, 1052
MspR9I CCNGG 4 cut(s) 386, 854, 1052, 1224
MunI CAATTG 1 cut(s) 970
Mva1269I GAATGC 1 cut(s) 1068
MvaI CCWGG 3 cut(s) 386, 854, 1224
MvnI CGCG 1 cut(s) 943
MwoI GCNNNNNNNGC 3 cut(s) 121, 600, 998
NciI CCSGG 1 cut(s) 1052
NdeII GATC 8 cut(s) 198, 321, 346, 388, 561, 847, 1080, 1184
NlaIII CATG 9 cut(s) 199, 215, 310, 529, 616, 669, 724, 1026, 1135
NmuCI GTSAC 1 cut(s) 841
NspI RCATGY 2 cut(s) 310, 669
NspV TTCGAA 1 cut(s) 106
PciI ACATGT 1 cut(s) 306
PctI GAATGC 1 cut(s) 1068
PfeI GAWTC 5 cut(s) 103, 184, 545, 802, 1019
PkrI GCNGC 1 cut(s) 677
PleI GAGTC 1 cut(s) 815
PpsI GAGTC 1 cut(s) 815
Ppu21I YACGTR 1 cut(s) 1178
PscI ACATGT 1 cut(s) 306
Psp6I CCWGG 3 cut(s) 384, 852, 1222
PspGI CCWGG 3 cut(s) 384, 852, 1222
PspPI GGNCC 6 cut(s) 137, 296, 426, 471, 1026, 1063
PstNI CAGNNNCTG 1 cut(s) 1172
PsuI RGATCY 1 cut(s) 388
PvuII CAGCTG 1 cut(s) 774
RsaI GTAC 2 cut(s) 311, 1176
RsaNI GTAC 2 cut(s) 310, 1175
RseI CAYNNNNRTG 2 cut(s) 336, 1136
SaqAI TTAA 5 cut(s) 41, 75, 519, 765, 1230
SatI GCNGC 1 cut(s) 676
Sau3AI GATC 8 cut(s) 198, 321, 346, 388, 561, 847, 1080, 1184
Sau96I GGNCC 6 cut(s) 137, 296, 426, 471, 1026, 1063
SchI GAGTC 1 cut(s) 815
ScrFI CCNGG 4 cut(s) 386, 854, 1052, 1224
SduI GDGCHC 1 cut(s) 117
SfaNI GCATC 2 cut(s) 165, 1023
SfuI TTCGAA 1 cut(s) 106
SinI GGWCC 4 cut(s) 137, 296, 1026, 1063
SmiMI CAYNNNNRTG 2 cut(s) 336, 1136
SmlI CTYRAG 1 cut(s) 833
SmoI CTYRAG 1 cut(s) 833
Sse9I AATT 6 cut(s) 68, 500, 618, 752, 766, 970
SsiI CCGC 3 cut(s) 645, 1066, 1076
SspMI CTAG 3 cut(s) 96, 587, 965
StyD4I CCNGG 4 cut(s) 384, 852, 1050, 1222
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 2 cut(s) 112, 468
TaiI ACGT 2 cut(s) 1092, 1180
TaqI TCGA 5 cut(s) 90, 106, 119, 909, 1237
TasI AATT 6 cut(s) 68, 500, 618, 752, 766, 970
TatI WGTACW 1 cut(s) 309
TfiI GAWTC 5 cut(s) 103, 184, 545, 802, 1019
Tru1I TTAA 5 cut(s) 41, 75, 519, 765, 1230
Tru9I TTAA 5 cut(s) 41, 75, 519, 765, 1230
TscAI CASTG 3 cut(s) 117, 473, 934
TseFI GTSAC 1 cut(s) 841
TseI GCWGC 1 cut(s) 675
Tsp45I GTSAC 1 cut(s) 841
TspDTI ATGAA 2 cut(s) 228, 263
TspGWI ACGGA 2 cut(s) 860, 1031
TspRI CASTG 3 cut(s) 117, 473, 934
VpaK11BI GGWCC 4 cut(s) 137, 296, 1026, 1063
XapI RAATTY 1 cut(s) 500
XbaI TCTAGA 1 cut(s) 964
XceI RCATGY 2 cut(s) 310, 669
XmiI GTMKAC 2 cut(s) 303, 583
XspI CTAG 3 cut(s) 96, 587, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.