Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001298

Physical Location & Seq

Genomic Coordinates Reverse (-)

28092412 .. 28093258

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g35583.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTATACTATCGACACTCGCAAGAGGAAAAGGATCTATGAGGAGCCGGATTCCGGCAAGCGTGCTCGGACCAGAGGGTGGGTTCGACAAGAGGTCGCGACCGTTTTCTTGGCTCGTCCGGCTAAACCAAGTAAGAAACTGCCTCCAATTATGGCCGTCAAGTCGGTAGATTTGTCGGAATCCGCGGCTTTGGCTAACGAAAGTCGACTTCTCAAGAAATTTCGGAGCTGCCCTTTTATCTTAAACACGTATGGCAGCGATGTGACGGTAGAAGTTGAAGATCAGAAGGTTGTTCAACGTTTTCTTGGAGATACTGGGATTGGCTCTCGCGTTGCAAAAATCGGGGATTTCGGGCTAGCAAAGACGGCTGCCAAAGACAATGTGATGAAGCGTTCTGAACAAATACATGGCACAAGATTGTATACGTCTCCAGAAATGTCAATGCAAAACATTCAAGAGCCGCCGGCTGACATTTGGGCATTAGGCTGCAGTGTTCTGCAGATGCTGACTGGGAAATTATATTTGGATGTCAACACTGACTCAAAAGATGACTGGGGGTATCCGATTGAAATTCCGATTATACCGGATGAGCTAAACGATGAGGAGGTGCTTCATAATGAACCCTTTGGAGAGGTTCACGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

215

Amino Acids

24.04

Weight (kDa)

6.34

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	110 - 170	7e-06	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	111 - 182	2.6e-12	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35583 FvH4_6g36890 FvH4_7g03770 FvH4_7g03770 FvH4_7g04440 FvH4_7g04790
malus_domestica	MD09G1165900.v1.1 MD17G1161800.v1.1
prunus_persica	Prupe.3G023500_v2.0.a1 Prupe.3G023600_v2.0.a1 Prupe.3G058200_v2.0.a1 Prupe.3G058400_v2.0.a1 Prupe.3G109900_v2.0.a1 Prupe.3G111200_v2.0.a1 Prupe.3G111500_v2.0.a1 Prupe.3G152600_v2.0.a1 Prupe.3G152700_v2.0.a1 Prupe.3G158300_v2.0.a1 Prupe.5G038600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147421 RchiOBHm_Chr2g0149301 RchiOBHm_Chr2g0149321
rosa_laevigata	RLG00000008572 RLG00000008574 RLG00000008575 RLG00000008577 RLG00000008579 RLG00000008580 RLG00000020260 RLG00000020391 RLG00000020392
rosa_multiflora	Rmu_sc0000873.1_g000012 Rmu_sc0000873.1_g000015 Rmu_sc0001159.1_g000028
rosa_roxburghii	Rroxscaffold_2G00098220 Rroxscaffold_2G00098230
rosa_rugosa	Rorug02G0400000.1 Rorug02G0410500 Rorug04G0092100 Rorug04G0092200 Rorug04G0114400
rosa_samantha	Rh2AG456800 Rh2AG471200 Rh2BG469600 Rh2CG444300 Rh2CG457100 Rh2DG479100 Rh2DG492400 Rh2DG492500 Rh4BG152900 Rh4BG153500 Rh7AG365800 Rh7AG366200 Rh7AG366400
rosa_wichuraiana	Rw2G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	78
AccI	GTMKAC	3 cut(s)	5, 205, 422
AccII	CGCG	3 cut(s)	98, 185, 330
AciI	CCGC	3 cut(s)	183, 185, 461
AclI	AACGTT	1 cut(s)	298
AclWI	GGATC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	2 cut(s)	218, 570
AfiI	CCNNNNNNNGG	2 cut(s)	53, 78
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	4 cut(s)	278, 296, 455, 569
AhdI	GACNNNNNGTC	1 cut(s)	92
AjuI	GAANNNNNNNTTGG	2 cut(s)	506, 538
AluBI	AGCT	2 cut(s)	228, 592
AluI	AGCT	2 cut(s)	228, 592
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	1 cut(s)	432
AlwI	GGATC	1 cut(s)	41
AlwNI	CAGNNNCTG	1 cut(s)	505
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	4 cut(s)	228, 255, 368, 486
ApoI	RAATTY	2 cut(s)	218, 570
AspS9I	GGNCC	1 cut(s)	69
AsuNHI	GCTAGC	1 cut(s)	355
AvaII	GGWCC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	4 cut(s)	215, 267, 355, 473
BceAI	ACGGC	2 cut(s)	140, 381
BciVI	GTATCC	1 cut(s)	570
BcoDI	GTCTC	1 cut(s)	432
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	2 cut(s)	487, 497
BfuI	GTATCC	1 cut(s)	570
BisI	GCNGC	6 cut(s)	186, 229, 256, 369, 461, 487
BlsI	GCNGC	6 cut(s)	187, 230, 257, 370, 462, 488
Bme18I	GGWCC	1 cut(s)	69
BmeRI	GACNNNNNGTC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	45
BmrI	ACTGGG	3 cut(s)	324, 519, 562
BmsI	GCATC	1 cut(s)	492
BmtI	GCTAGC	1 cut(s)	359
BmuI	ACTGGG	3 cut(s)	324, 519, 562
BpmI	CTGGAG	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	197
BsaAI	YACGTR	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	583
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 78
Bse118I	RCCGGY	1 cut(s)	463
Bse1I	ACTGG	3 cut(s)	319, 514, 557
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	2 cut(s)	532, 592
BseLI	CCNNNNNNNGG	2 cut(s)	53, 78
BseNI	ACTGG	3 cut(s)	319, 514, 557
BseRI	GAGGAG	2 cut(s)	56, 617
BseXI	GCAGC	4 cut(s)	215, 267, 355, 473
Bsh1236I	CGCG	3 cut(s)	98, 185, 330
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	5 cut(s)	47, 54, 119, 464, 584
BslI	CCNNNNNNNGG	2 cut(s)	53, 78
BsmAI	GTCTC	1 cut(s)	432
BsmBI	CGTCTC	1 cut(s)	432
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	2 cut(s)	33, 280
Bsp68I	TCGCGA	1 cut(s)	98
BspACI	CCGC	3 cut(s)	183, 185, 461
BspANI	GGCC	1 cut(s)	155
BspFNI	CGCG	3 cut(s)	98, 185, 330
BspLI	GGNNCC	1 cut(s)	45
BspMAI	CTGCAG	2 cut(s)	491, 501
BspOI	GCTAGC	1 cut(s)	359
BspPI	GGATC	1 cut(s)	41
BsrFI	RCCGGY	1 cut(s)	463
BsrI	ACTGG	3 cut(s)	319, 514, 557
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	2 cut(s)	33, 280
BssNAI	GTATAC	2 cut(s)	6, 423
Bst1107I	GTATAC	2 cut(s)	6, 423
Bst4CI	ACNGT	2 cut(s)	103, 268
BstBAI	YACGTR	1 cut(s)	249
BstC8I	GCNNGC	4 cut(s)	59, 63, 357, 465
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	532, 592
BstFNI	CGCG	3 cut(s)	98, 185, 330
BstKTI	GATC	2 cut(s)	36, 283
BstMAI	GTCTC	1 cut(s)	432
BstMBI	GATC	2 cut(s)	33, 280
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 191, 365
BstSFI	CTRYAG	2 cut(s)	487, 497
BstUI	CGCG	3 cut(s)	98, 185, 330
BstV1I	GCAGC	4 cut(s)	215, 267, 355, 473
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BstZ17I	GTATAC	2 cut(s)	6, 423
BsuI	GTATCC	1 cut(s)	570
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	183
BtgZI	GCGATG	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	532, 592
BtsI	GCAGTG	1 cut(s)	496
BtsIMutI	CAGTG	2 cut(s)	496, 534
BtuMI	TCGCGA	1 cut(s)	98
Cac8I	GCNNGC	4 cut(s)	59, 63, 357, 465
CaiI	CAGNNNCTG	1 cut(s)	505
Cfr10I	RCCGGY	1 cut(s)	463
Cfr13I	GGNCC	1 cut(s)	69
Cfr42I	CCGCGG	1 cut(s)	186
CviAII	CATG	1 cut(s)	407
DpnI	GATC	2 cut(s)	35, 282
DpnII	GATC	2 cut(s)	33, 280
DriI	GACNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	153
Eam1105I	GACNNNNNGTC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	69
Esp3I	CGTCTC	1 cut(s)	432
FaeI	CATG	1 cut(s)	410
FaiI	YATR	9 cut(s)	6, 39, 152, 252, 408, 423, 520, 581, 615
FatI	CATG	1 cut(s)	406
FblI	GTMKAC	3 cut(s)	5, 205, 422
Fnu4HI	GCNGC	6 cut(s)	186, 229, 256, 369, 461, 487
FokI	GGATG	2 cut(s)	539, 599
Fsp4HI	GCNGC	6 cut(s)	186, 229, 256, 369, 461, 487
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	6 cut(s)	186, 229, 256, 369, 461, 487
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	5 cut(s)	47, 54, 119, 464, 584
Hin1II	CATG	1 cut(s)	410
HincII	GTYRAC	2 cut(s)	206, 532
HindII	GTYRAC	2 cut(s)	206, 532
HinfI	GANTC	3 cut(s)	50, 179, 539
HpaII	CCGG	5 cut(s)	47, 54, 119, 464, 584
Hpy166II	GTNNAC	5 cut(s)	6, 206, 423, 532, 637
Hpy188I	TCNGA	7 cut(s)	69, 178, 225, 285, 397, 564, 576
Hpy188III	TCNNGA	4 cut(s)	97, 214, 431, 455
Hpy8I	GTNNAC	5 cut(s)	6, 206, 423, 532, 637
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	2 cut(s)	103, 268
HpyCH4IV	ACGT	3 cut(s)	248, 298, 425
HpyCH4V	TGCA	4 cut(s)	335, 445, 489, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 191, 365
HpySE526I	ACGT	3 cut(s)	248, 298, 425
Hsp92II	CATG	1 cut(s)	410
KroI	GCCGGC	1 cut(s)	463
KroNI	GCCGGC	1 cut(s)	465
KspI	CCGCGG	1 cut(s)	186
Kzo9I	GATC	2 cut(s)	33, 280
LmnI	GCTCC	2 cut(s)	43, 225
Lsp1109I	GCAGC	4 cut(s)	215, 267, 355, 473
LweI	GCATC	1 cut(s)	492
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	3 cut(s)	248, 298, 425
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	35, 282
MboI	GATC	2 cut(s)	33, 280
MboII	GAAGA	1 cut(s)	290
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	4 cut(s)	147, 218, 515, 570
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	8 cut(s)	18, 34, 68, 85, 153, 595, 598, 625
MroNI	GCCGGC	1 cut(s)	463
MseI	TTAA	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	5 cut(s)	47, 54, 119, 464, 584
MvnI	CGCG	3 cut(s)	98, 185, 330
MwoI	GCNNNNNNNGC	3 cut(s)	119, 191, 365
NaeI	GCCGGC	1 cut(s)	465
NdeII	GATC	2 cut(s)	33, 280
NgoMIV	GCCGGC	1 cut(s)	463
NheI	GCTAGC	1 cut(s)	355
NlaIII	CATG	1 cut(s)	410
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	262
NruI	TCGCGA	1 cut(s)	98
PdiI	GCCGGC	1 cut(s)	465
PfeI	GAWTC	2 cut(s)	50, 179
PflMI	CCANNNNNTGG	1 cut(s)	78
PkrI	GCNGC	6 cut(s)	187, 230, 257, 370, 462, 488
PleI	GAGTC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	533
Ppu21I	YACGTR	1 cut(s)	249
Psp1406I	AACGTT	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	69
PstI	CTGCAG	2 cut(s)	491, 501
PstNI	CAGNNNCTG	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	33
RruI	TCGCGA	1 cut(s)	98
SacII	CCGCGG	1 cut(s)	186
SalI	GTCGAC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	6 cut(s)	186, 229, 256, 369, 461, 487
Sau3AI	GATC	2 cut(s)	33, 280
Sau96I	GGNCC	1 cut(s)	69
SchI	GAGTC	1 cut(s)	533
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	9 cut(s)	96, 230, 251, 291, 301, 428, 594, 609, 636
SfaNI	GCATC	1 cut(s)	492
SfcI	CTRYAG	2 cut(s)	487, 497
Sfr303I	CCGCGG	1 cut(s)	186
SgrBI	CCGCGG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	4 cut(s)	147, 218, 515, 570
SsiI	CCGC	3 cut(s)	183, 185, 461
SspMI	CTAG	1 cut(s)	356
TaaI	ACNGT	2 cut(s)	103, 268
TaiI	ACGT	3 cut(s)	251, 301, 428
TaqI	TCGA	3 cut(s)	12, 85, 205
TasI	AATT	4 cut(s)	147, 218, 515, 570
TauI	GCSGC	2 cut(s)	188, 463
TfiI	GAWTC	2 cut(s)	50, 179
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TscAI	CASTG	2 cut(s)	496, 541
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	4 cut(s)	228, 255, 368, 486
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	3 cut(s)	401, 602, 633
TspRI	CASTG	2 cut(s)	496, 541
Van91I	CCANNNNNTGG	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	69
XapI	RAATTY	2 cut(s)	218, 570
XmiI	GTMKAC	3 cut(s)	5, 205, 422
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.