Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001298

Physical Location & Seq

Genomic Coordinates Reverse (-)

32374834 .. 32378286

Gene Structure 3453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008575

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGGTTTGAAAAGGAAAAGAAGCAGAGAGTTGGGTGAGTGGGTTTTGGGAGATTTGATTGGCAAGGGGGGTTTTGGGAGTGTCTATAAGGCCTATCCACTTAAGTTAGAGAAAGGGTCTCCTGCTATCATGGCCGTTAAGGTCGCTGAGGTTTCTGATCCAAAAAAGGTTGATGCTTTATTCACCGAGGCCAAACTTCTCTCTCAGTTTCAGGACTGCCCTTTTGTTATCAACTCTTTTGGAGAACAGTGGACTTATAAGTCTCATCATAATTCTTTCTCTTTCAATCTGCTATTAGAATTTGCGGCCGGAGGCACTATAAGAGATAGGATTCAGAAATCCGCATCCGGCTTGTCCGAATGTGAGATAAAAGAGTTCACCAAGTCAGTTCTTAGTGGTCTCCAGTGCATTCATGACAAAGGTTATGTGCATTGCGACATAAAGCCCGATAACATTCTTCTTGTGCACGACATGACTTCTCATGTCGATTTTGTGGCTAAGATAGGAGACTTTGGATTGACAAAGAGCGCTCAAAATGAGTATTCTCGCCAAGGCACCGCAAGCTATTTGCCTCCTGAAACTGTTATCAGTAACATTCAAGGGAAGCCATCAGACATTTGGGCACTAGGATGTTTAGTTCTAGAGATGTTGACTGGAACCTTGTGGCCTTGCAAGACAAGTGAGGACTTAGGCGGTTGGGTTTCAAATCCAATTATTCCTTCACACTTGTCCGAGGAGGCCAAGGATTTTTTGGCAAAGTGTCTGGATATAGATGCTTCCAAGAGATTTACGGCTGAGAGGCTCTTGACTCACTCATTTCTTATGACTGAACAGAGCGTTGAACAAGTAGCTAAAGTGCCCGCATTATTTCTCAACATTTTCAATATTCCTAAAGCTTTTGAGGTTCTCCAATCCCTGACACCTGTATATGGGATTTTGTCTCCTACTGGCCAACTCAGTGAAGTCCGCAAAATTCTTGATCTCAGCACTGAATCCAAGTGGATCTGCATTTGGAGTTTGAACCTGCCCCAGAAGATTAGAAATTTTTTTATGGCTGCCATCTCAGTATGTGATCACAAAAAGGGGAAGTCTGGAGTAGTGGTGCGAGATGAAGAAGGAAGGCTCAAACTAGGTAATCCTTCAGTTCAAGGCTTCAAGCAATCGAAAACCCTTGCATATGGTCTGAATGAAATTAGCTGGAGTGAAAACTCAAACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

407

Amino Acids

45.0

Weight (kDa)

7.56

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	17 - 274	1.7e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	17 - 269	1.8e-27	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35583 FvH4_6g36890 FvH4_7g03770 FvH4_7g03770 FvH4_7g04440 FvH4_7g04790
malus_domestica	MD09G1165900.v1.1 MD17G1161800.v1.1
prunus_persica	Prupe.3G023500_v2.0.a1 Prupe.3G023600_v2.0.a1 Prupe.3G058200_v2.0.a1 Prupe.3G058400_v2.0.a1 Prupe.3G109900_v2.0.a1 Prupe.3G111200_v2.0.a1 Prupe.3G111500_v2.0.a1 Prupe.3G152600_v2.0.a1 Prupe.3G152700_v2.0.a1 Prupe.3G158300_v2.0.a1 Prupe.5G038600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147421 RchiOBHm_Chr2g0149301 RchiOBHm_Chr2g0149321
rosa_laevigata	RLG00000008572 RLG00000008574 RLG00000008575 RLG00000008577 RLG00000008579 RLG00000008580 RLG00000020260 RLG00000020391 RLG00000020392
rosa_multiflora	Rmu_sc0000873.1_g000012 Rmu_sc0000873.1_g000015 Rmu_sc0001159.1_g000028
rosa_roxburghii	Rroxscaffold_2G00098220 Rroxscaffold_2G00098230
rosa_rugosa	Rorug02G0400000.1 Rorug02G0410500 Rorug04G0092100 Rorug04G0092200 Rorug04G0114400
rosa_samantha	Rh2AG456800 Rh2AG471200 Rh2BG469600 Rh2CG444300 Rh2CG457100 Rh2DG479100 Rh2DG492400 Rh2DG492500 Rh4BG152900 Rh4BG153500 Rh7AG365800 Rh7AG366200 Rh7AG366400
rosa_wichuraiana	Rw2G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	258
AasI	GACNNNNNNGTC	1 cut(s)	259
Acc36I	ACCTGC	1 cut(s)	1032
AccB1I	GGYRCC	1 cut(s)	554
AciI	CCGC	6 cut(s)	305, 342, 558, 693, 861, 967
AclWI	GGATC	2 cut(s)	152, 1010
AcoI	YGGCCR	3 cut(s)	132, 306, 949
AcsI	RAATTY	3 cut(s)	299, 972, 1042
AcuI	CTGAAG	1 cut(s)	1125
AfeI	AGCGCT	1 cut(s)	529
AfiI	CCNNNNNNNGG	1 cut(s)	929
AflII	CTTAAG	1 cut(s)	101
AgsI	TTSAA	9 cut(s)	10, 286, 599, 705, 842, 883, 1021, 1148, 1156
AjuI	GAANNNNNNNTTGG	2 cut(s)	703, 735
AloI	GAACNNNNNNTCC	2 cut(s)	621, 653
AluBI	AGCT	4 cut(s)	564, 851, 896, 1197
AluI	AGCT	4 cut(s)	564, 851, 896, 1197
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	5 cut(s)	123, 267, 404, 501, 945
Alw44I	GTGCAC	1 cut(s)	464
AlwI	GGATC	2 cut(s)	152, 1010
Aor51HI	AGCGCT	1 cut(s)	529
AoxI	GGCC	7 cut(s)	90, 132, 189, 306, 665, 738, 949
ApaLI	GTGCAC	1 cut(s)	464
ApeKI	GCWGC	1 cut(s)	1055
ApoI	RAATTY	3 cut(s)	299, 972, 1042
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AspLEI	GCGC	1 cut(s)	530
AsuHPI	GGTGA	3 cut(s)	47, 175, 370
BaeGI	GKGCMC	3 cut(s)	468, 625, 861
BalI	TGGCCA	1 cut(s)	951
BanI	GGYRCC	1 cut(s)	554
Bbv12I	GWGCWC	1 cut(s)	468
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	1042
BccI	CCATC	2 cut(s)	616, 1067
BceAI	ACGGC	2 cut(s)	119, 807
BclI	TGATCA	1 cut(s)	1072
BcoDI	GTCTC	5 cut(s)	123, 267, 404, 501, 945
BfaI	CTAG	3 cut(s)	626, 641, 1130
BfoI	RGCGCY	1 cut(s)	531
BfrI	CTTAAG	1 cut(s)	101
BfuAI	ACCTGC	1 cut(s)	1032
BisI	GCNGC	2 cut(s)	306, 1056
BlsI	GCNGC	2 cut(s)	307, 1057
BmiI	GGNNCC	2 cut(s)	556, 658
BmsI	GCATC	3 cut(s)	163, 353, 763
BpmI	CTGGAG	3 cut(s)	386, 1113, 1219
Bpu10I	CCTNAGC	1 cut(s)	147
BsaI	GGTCTC	2 cut(s)	123, 404
BsaJI	CCNNGG	4 cut(s)	186, 550, 732, 741
BsaXI	ACNNNNNCTCC	2 cut(s)	1086, 1116
Bsc4I	CCNNNNNNNGG	1 cut(s)	929
Bse1I	ACTGG	3 cut(s)	403, 658, 952
Bse3DI	GCAATG	1 cut(s)	430
BseDI	CCNNGG	4 cut(s)	186, 550, 732, 741
BseGI	GGATG	2 cut(s)	344, 635
BseLI	CCNNNNNNNGG	1 cut(s)	929
BseMI	GCAATG	1 cut(s)	430
BseMII	CTCAG	6 cut(s)	138, 218, 786, 970, 997, 1077
BseNI	ACTGG	3 cut(s)	403, 658, 952
BseRI	GAGGAG	1 cut(s)	749
BseSI	GKGCMC	3 cut(s)	468, 625, 861
BseX3I	CGGCCG	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	1042
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	7 cut(s)	92, 134, 191, 308, 667, 740, 951
BshNI	GGYRCC	1 cut(s)	554
BsiEI	CGRYCG	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	468
BsiSI	CCGG	2 cut(s)	309, 348
BslI	CCNNNNNNNGG	1 cut(s)	929
BsmAI	GTCTC	5 cut(s)	123, 267, 404, 501, 945
BsmI	GAATGC	1 cut(s)	408
BsnI	GGCC	7 cut(s)	92, 134, 191, 308, 667, 740, 951
Bso31I	GGTCTC	2 cut(s)	123, 404
Bsp1286I	GDGCHC	3 cut(s)	468, 625, 861
Bsp143I	GATC	4 cut(s)	157, 979, 1002, 1072
BspACI	CCGC	6 cut(s)	305, 342, 558, 693, 861, 967
BspANI	GGCC	7 cut(s)	92, 134, 191, 308, 667, 740, 951
BspCNI	CTCAG	6 cut(s)	139, 217, 787, 969, 996, 1076
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	556, 658
BspMI	ACCTGC	1 cut(s)	1032
BspPI	GGATC	2 cut(s)	152, 1010
BspT107I	GGYRCC	1 cut(s)	554
BspTI	CTTAAG	1 cut(s)	101
BspTNI	GGTCTC	2 cut(s)	123, 404
BsrDI	GCAATG	1 cut(s)	430
BsrI	ACTGG	3 cut(s)	403, 658, 952
BssECI	CCNNGG	4 cut(s)	186, 550, 732, 741
BssMI	GATC	4 cut(s)	157, 979, 1002, 1072
BssT1I	CCWWGG	2 cut(s)	550, 741
Bst4CI	ACNGT	3 cut(s)	249, 583, 1217
BstAFI	CTTAAG	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	562, 861
BstDEI	CTNAG	9 cut(s)	147, 204, 392, 498, 688, 795, 956, 983, 1063
BstF5I	GGATG	2 cut(s)	344, 635
BstH2I	RGCGCY	1 cut(s)	531
BstHHI	GCGC	1 cut(s)	530
BstKTI	GATC	4 cut(s)	160, 982, 1005, 1075
BstMAI	GTCTC	5 cut(s)	123, 267, 404, 501, 945
BstMBI	GATC	4 cut(s)	157, 979, 1002, 1072
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 561
BstSLI	GKGCMC	3 cut(s)	468, 625, 861
BstV1I	GCAGC	1 cut(s)	1042
BstX2I	RGATCY	1 cut(s)	1002
BstYI	RGATCY	1 cut(s)	1002
BstZI	CGGCCG	1 cut(s)	306
BsuRI	GGCC	7 cut(s)	92, 134, 191, 308, 667, 740, 951
BtsCI	GGATG	2 cut(s)	344, 635
BtsIMutI	CAGTG	4 cut(s)	254, 410, 964, 987
BveI	ACCTGC	1 cut(s)	1032
Cac8I	GCNNGC	2 cut(s)	562, 861
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	1 cut(s)	530
CviAII	CATG	4 cut(s)	130, 413, 472, 482
DdeI	CTNAG	9 cut(s)	147, 204, 392, 498, 688, 795, 956, 983, 1063
DpnI	GATC	4 cut(s)	159, 981, 1004, 1074
DpnII	GATC	4 cut(s)	157, 979, 1002, 1072
DrdI	GACNNNNNNGTC	1 cut(s)	259
DseDI	GACNNNNNNGTC	1 cut(s)	259
EaeI	YGGCCR	3 cut(s)	132, 306, 949
EagI	CGGCCG	1 cut(s)	306
EclXI	CGGCCG	1 cut(s)	306
Eco130I	CCWWGG	2 cut(s)	550, 741
Eco147I	AGGCCT	1 cut(s)	92
Eco31I	GGTCTC	2 cut(s)	123, 404
Eco47III	AGCGCT	1 cut(s)	529
Eco52I	CGGCCG	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	1125
EcoT14I	CCWWGG	2 cut(s)	550, 741
ErhI	CCWWGG	2 cut(s)	550, 741
FaeI	CATG	4 cut(s)	133, 416, 475, 485
FatI	CATG	4 cut(s)	129, 412, 471, 481
FauI	CCCGC	1 cut(s)	868
FauNDI	CATATG	1 cut(s)	1177
FbaI	TGATCA	1 cut(s)	1072
Fnu4HI	GCNGC	2 cut(s)	306, 1056
FokI	GGATG	2 cut(s)	331, 642
Fsp4HI	GCNGC	2 cut(s)	306, 1056
FspBI	CTAG	3 cut(s)	626, 641, 1130
GlaI	GCGC	1 cut(s)	529
GluI	GCNGC	2 cut(s)	306, 1056
GsuI	CTGGAG	3 cut(s)	386, 1113, 1219
HaeII	RGCGCY	1 cut(s)	531
HaeIII	GGCC	7 cut(s)	92, 134, 191, 308, 667, 740, 951
HapII	CCGG	2 cut(s)	309, 348
HhaI	GCGC	1 cut(s)	530
Hin1II	CATG	4 cut(s)	133, 416, 475, 485
Hin6I	GCGC	1 cut(s)	528
HinP1I	GCGC	1 cut(s)	528
HincII	GTYRAC	1 cut(s)	651
HindII	GTYRAC	1 cut(s)	651
HindIII	AAGCTT	1 cut(s)	894
HinfI	GANTC	3 cut(s)	331, 808, 992
HpaII	CCGG	2 cut(s)	309, 348
HphI	GGTGA	3 cut(s)	47, 175, 370
Hpy166II	GTNNAC	4 cut(s)	252, 378, 466, 651
Hpy188I	TCNGA	6 cut(s)	157, 336, 358, 613, 733, 1185
Hpy188III	TCNNGA	8 cut(s)	212, 413, 575, 641, 764, 805, 977, 1092
Hpy8I	GTNNAC	4 cut(s)	252, 378, 466, 651
HpyAV	CCTTC	4 cut(s)	729, 1109, 1113, 1149
HpyCH4III	ACNGT	3 cut(s)	249, 583, 1217
HpyCH4V	TGCA	6 cut(s)	408, 430, 466, 672, 1008, 1175
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 561
HpyF3I	CTNAG	9 cut(s)	147, 204, 392, 498, 688, 795, 956, 983, 1063
Hsp92II	CATG	4 cut(s)	133, 416, 475, 485
HspAI	GCGC	1 cut(s)	528
Ksp22I	TGATCA	1 cut(s)	1072
Kzo9I	GATC	4 cut(s)	157, 979, 1002, 1072
Lsp1109I	GCAGC	1 cut(s)	1042
LweI	GCATC	3 cut(s)	163, 353, 763
MaeI	CTAG	3 cut(s)	626, 641, 1130
MaeIII	GTNAC	1 cut(s)	590
MalI	GATC	4 cut(s)	159, 981, 1004, 1074
MboI	GATC	4 cut(s)	157, 979, 1002, 1072
MboII	GAAGA	3 cut(s)	449, 1045, 1124
MflI	RGATCY	1 cut(s)	1002
MhlI	GDGCHC	3 cut(s)	468, 625, 861
MlsI	TGGCCA	1 cut(s)	951
MluCI	AATT	6 cut(s)	271, 299, 711, 972, 1042, 1191
MluNI	TGGCCA	1 cut(s)	951
MlyI	GAGTC	1 cut(s)	802
MnlI	CCTC	9 cut(s)	142, 181, 305, 582, 676, 727, 730, 792, 895
Mox20I	TGGCCA	1 cut(s)	951
MscI	TGGCCA	1 cut(s)	951
MseI	TTAA	2 cut(s)	102, 138
MslI	CAYNNNNRTG	1 cut(s)	628
Msp20I	TGGCCA	1 cut(s)	951
MspCI	CTTAAG	1 cut(s)	101
MspI	CCGG	2 cut(s)	309, 348
Mva1269I	GAATGC	1 cut(s)	408
MwoI	GCNNNNNNNGC	2 cut(s)	131, 561
NdeI	CATATG	1 cut(s)	1177
NdeII	GATC	4 cut(s)	157, 979, 1002, 1072
NlaIII	CATG	4 cut(s)	133, 416, 475, 485
NlaIV	GGNNCC	2 cut(s)	556, 658
PagI	TCATGA	1 cut(s)	412
PceI	AGGCCT	1 cut(s)	92
PctI	GAATGC	1 cut(s)	408
PfeI	GAWTC	2 cut(s)	331, 992
PkrI	GCNGC	2 cut(s)	307, 1057
PleI	GAGTC	1 cut(s)	802
PpsI	GAGTC	1 cut(s)	802
PsiI	TTATAA	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	556, 658
PsuI	RGATCY	1 cut(s)	1002
RseI	CAYNNNNRTG	1 cut(s)	628
SaqAI	TTAA	2 cut(s)	102, 138
SatI	GCNGC	2 cut(s)	306, 1056
Sau3AI	GATC	4 cut(s)	157, 979, 1002, 1072
SchI	GAGTC	1 cut(s)	802
SduI	GDGCHC	3 cut(s)	468, 625, 861
SfaNI	GCATC	3 cut(s)	163, 353, 763
SmiMI	CAYNNNNRTG	1 cut(s)	628
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	6 cut(s)	271, 299, 711, 972, 1042, 1191
SseBI	AGGCCT	1 cut(s)	92
SsiI	CCGC	6 cut(s)	305, 342, 558, 693, 861, 967
SspI	AATATT	1 cut(s)	886
SspMI	CTAG	3 cut(s)	626, 641, 1130
StuI	AGGCCT	1 cut(s)	92
StyI	CCWWGG	2 cut(s)	550, 741
TaaI	ACNGT	3 cut(s)	249, 583, 1217
TaqI	TCGA	2 cut(s)	486, 1163
TasI	AATT	6 cut(s)	271, 299, 711, 972, 1042, 1191
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	2 cut(s)	331, 992
Tru1I	TTAA	2 cut(s)	102, 138
Tru9I	TTAA	2 cut(s)	102, 138
TscAI	CASTG	4 cut(s)	254, 410, 964, 994
TseI	GCWGC	1 cut(s)	1055
TspDTI	ATGAA	3 cut(s)	401, 1125, 1203
TspRI	CASTG	4 cut(s)	254, 410, 964, 994
Vha464I	CTTAAG	1 cut(s)	101
VneI	GTGCAC	1 cut(s)	464
XapI	RAATTY	3 cut(s)	299, 972, 1042
XbaI	TCTAGA	1 cut(s)	640
XcmI	CCANNNNNNNNNTGG	2 cut(s)	615, 748
XspI	CTAG	3 cut(s)	626, 641, 1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.