RLG00000020392

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001298
Physical Location & Seq
Forward (+)
64548396 .. 64549385
990 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020392

Sequence Viewer

Length: 990 bp
ATGGAAAAGCTCGAGAAGAAGAGGAAAAGAATCCGGGAGGAAGAGCCGGATTCTGGCAACGTCGGTCGGACCAAACGGTGGGTTCGAGAAAGGTTCCTCGGCGCAGGACAATTCGGTACGGTTTTCTTGGCTAGTCCGGCCAAACCAGGTTCCAAACTGCCGCCGGTTATGGCCGTGAAGTCGGCTATGCTCTCGGAATCTGCCGACTTGGTTAAAGAAAGTCGACTTCTCAAGAAATTCAAGAACTGCCCTTTTATCCTTGACACTTACGGCAGCGATGTGACTAAAGATGTTGAAGGTGAGGAGTTGTTTAACGTTTTCTTGGAGTATGCTCAAAGAGGAACCATAGAGGATTGGATTCAGAAACTCAAGAATTTCGGGTTGCATGAGCTGCACGTAAGGAGGTATACAGAGTCAGTATTGAAGGGGCTCAAGTACATTCATGGAAAGGGTTTTGTGCACTGTGACATTAAGCCTGCCAATGTATTGCTAGTGCGTGACGGTCCTGATGATACCGGGTTTGGATCTTATGTGGCGAAAATCGGGGATTTAGGGCTAGCAAAGAGGGCTGACAAGTACAATGTGATGAAGCGTTCTGATTATATAAATGGCACTGAGTTGTATATGTCTCCAGAAGTATCGCTACACAACATTCAGGAGCCGCCGGCCGACATTTGGGCATTAGGCTGTACTGTTCTGCAGATGTTAACTGGGATGGAGTTTTGGGATGTGAACACTGACTTAAGAGATGGCTGGGGGGTTCCGATTGAGATTCCGGTTATCCCTGAAAGGTTAAGCAGTGAGGCTAAGGATTTTTTGGGGAAGTGCTTCATATTGGACCCTTTGGAGAGGTACACGGCTGAGATGCTTTTGAAGCACCCTTTTGTGTGCAACAGCTTGCGAATATGGACAGTCTCATCTGGTGATTTGGTTCCAAGAAGCCGAGTTTGCCAAGGACCACCAGCAATTCCTCTAATGGGTGCGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

330

Amino Acids

37.03

Weight (kDa)

8.11

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 28 - 296 6.2e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 31 - 290 3.5e-22 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 78
AccI GTMKAC 2 cut(s) 223, 407
AciI CCGC 3 cut(s) 161, 662, 983
AclI AACGTT 1 cut(s) 315
AclWI GGATC 1 cut(s) 532
AcoI YGGCCR 3 cut(s) 138, 171, 666
AcsI RAATTY 2 cut(s) 236, 373
AfaI GTAC 5 cut(s) 118, 437, 578, 691, 854
AfiI CCNNNNNNNGG 4 cut(s) 53, 78, 675, 977
AflII CTTAAG 1 cut(s) 742
AgsI TTSAA 4 cut(s) 241, 296, 424, 874
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 3 cut(s) 10, 391, 897
AluI AGCT 3 cut(s) 10, 391, 897
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 2 cut(s) 633, 919
Alw44I GTGCAC 1 cut(s) 458
AlwI GGATC 1 cut(s) 532
Ama87I CYCGRG 1 cut(s) 11
AoxI GGCC 3 cut(s) 138, 171, 666
ApaLI GTGCAC 1 cut(s) 458
ApeKI GCWGC 2 cut(s) 273, 391
ApoI RAATTY 2 cut(s) 236, 373
Asp700I GAANNNNTTC 1 cut(s) 827
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 4 cut(s) 69, 503, 838, 956
AsuC2I CCSGG 2 cut(s) 35, 517
AsuHPI GGTGA 2 cut(s) 311, 935
AsuNHI GCTAGC 1 cut(s) 556
AvaI CYCGRG 1 cut(s) 11
AvaII GGWCC 4 cut(s) 69, 503, 838, 956
BaeGI GKGCMC 1 cut(s) 462
BanII GRGCYC 1 cut(s) 432
BarI GAAGNNNNNNTAC 2 cut(s) 627, 659
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 2 cut(s) 285, 378
BccI CCATC 2 cut(s) 709, 743
BceAI ACGGC 3 cut(s) 158, 286, 873
BciT130I CCWGG 1 cut(s) 147
BcnI CCSGG 2 cut(s) 35, 517
BcoDI GTCTC 2 cut(s) 633, 919
BfaI CTAG 3 cut(s) 132, 491, 557
BfmI CTRYAG 1 cut(s) 698
BfrI CTTAAG 1 cut(s) 742
BisI GCNGC 5 cut(s) 161, 274, 392, 662, 984
BlsI GCNGC 5 cut(s) 162, 275, 393, 663, 985
Bme1390I CCNGG 3 cut(s) 35, 147, 517
Bme18I GGWCC 4 cut(s) 69, 503, 838, 956
BmeT110I CYCGRG 1 cut(s) 11
BmgT120I GGNCC 4 cut(s) 69, 503, 838, 956
BmiI GGNNCC 7 cut(s) 95, 151, 343, 660, 762, 840, 933
BmrFI CCNGG 3 cut(s) 35, 147, 517
BmrI ACTGGG 1 cut(s) 720
BmsI GCATC 1 cut(s) 855
BmtI GCTAGC 1 cut(s) 560
BmuI ACTGGG 1 cut(s) 720
BpmI CTGGAG 1 cut(s) 615
Bpu10I CCTNAGC 1 cut(s) 807
BpuEI CTTGAG 3 cut(s) 215, 353, 416
BpuMI CCSGG 2 cut(s) 35, 517
BsaAI YACGTR 1 cut(s) 397
BsaJI CCNNGG 2 cut(s) 97, 952
BsaWI WCCGGW 1 cut(s) 775
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 78, 675, 977
Bse118I RCCGGY 2 cut(s) 163, 664
Bse1I ACTGG 1 cut(s) 715
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 2 cut(s) 97, 952
BseGI GGATG 2 cut(s) 720, 733
BseLI CCNNNNNNNGG 4 cut(s) 53, 78, 675, 977
BseMII CTCAG 2 cut(s) 606, 852
BseNI ACTGG 1 cut(s) 715
BseRI GAGGAG 1 cut(s) 317
BseSI GKGCMC 1 cut(s) 462
BseX3I CGGCCG 1 cut(s) 666
BseXI GCAGC 2 cut(s) 285, 378
BseYI CCCAGC 1 cut(s) 753
BsgI GTGCAG 1 cut(s) 377
Bsh1285I CGRYCG 2 cut(s) 67, 669
BshFI GGCC 3 cut(s) 140, 173, 668
BsiEI CGRYCG 2 cut(s) 67, 669
BsiHKAI GWGCWC 1 cut(s) 462
BsiHKCI CYCGRG 1 cut(s) 11
BsiSI CCGG 7 cut(s) 34, 47, 137, 164, 516, 665, 776
BslI CCNNNNNNNGG 4 cut(s) 53, 78, 675, 977
BsmAI GTCTC 2 cut(s) 633, 919
BsnI GGCC 3 cut(s) 140, 173, 668
BsoBI CYCGRG 1 cut(s) 11
Bsp1286I GDGCHC 2 cut(s) 432, 462
Bsp143I GATC 1 cut(s) 524
BspACI CCGC 3 cut(s) 161, 662, 983
BspANI GGCC 3 cut(s) 140, 173, 668
BspCNI CTCAG 2 cut(s) 607, 853
BspLI GGNNCC 7 cut(s) 95, 151, 343, 660, 762, 840, 933
BspMAI CTGCAG 1 cut(s) 702
BspOI GCTAGC 1 cut(s) 560
BspPI GGATC 1 cut(s) 532
BspQI GCTCTTC 1 cut(s) 36
BspTI CTTAAG 1 cut(s) 742
BsrFI RCCGGY 2 cut(s) 163, 664
BsrI ACTGG 1 cut(s) 715
BssAI RCCGGY 2 cut(s) 163, 664
BssECI CCNNGG 2 cut(s) 97, 952
BssMI GATC 1 cut(s) 524
BssNAI GTATAC 1 cut(s) 408
BssT1I CCWWGG 1 cut(s) 952
Bst1107I GTATAC 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 6 cut(s) 78, 121, 464, 503, 694, 913
Bst6I CTCTTC 2 cut(s) 14, 36
BstAFI CTTAAG 1 cut(s) 742
BstAPI GCANNNNNTGC 1 cut(s) 391
BstBAI YACGTR 1 cut(s) 397
BstC8I GCNNGC 4 cut(s) 477, 558, 666, 899
BstDEI CTNAG 3 cut(s) 615, 807, 861
BstF5I GGATG 2 cut(s) 720, 733
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 1 cut(s) 527
BstMAI GTCTC 2 cut(s) 633, 919
BstMBI GATC 1 cut(s) 524
BstMCI CGRYCG 2 cut(s) 67, 669
BstMWI GCNNNNNNNGC 5 cut(s) 137, 391, 566, 874, 948
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 3 cut(s) 33, 145, 515
BstSFI CTRYAG 1 cut(s) 698
BstSLI GKGCMC 1 cut(s) 462
BstV1I GCAGC 2 cut(s) 285, 378
BstX2I RGATCY 1 cut(s) 524
BstYI RGATCY 1 cut(s) 524
BstZ17I GTATAC 1 cut(s) 408
BstZI CGGCCG 1 cut(s) 666
BsuRI GGCC 3 cut(s) 140, 173, 668
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 2 cut(s) 720, 733
BtsI GCAGTG 1 cut(s) 805
BtsIMutI CAGTG 4 cut(s) 460, 612, 735, 805
Cac8I GCNNGC 4 cut(s) 477, 558, 666, 899
CfoI GCGC 1 cut(s) 104
Cfr10I RCCGGY 2 cut(s) 163, 664
Cfr13I GGNCC 4 cut(s) 69, 503, 838, 956
CsiI ACCWGGT 1 cut(s) 145
Csp6I GTAC 5 cut(s) 117, 436, 577, 690, 853
CviAII CATG 2 cut(s) 386, 443
CviQI GTAC 5 cut(s) 117, 436, 577, 690, 853
DdeI CTNAG 3 cut(s) 615, 807, 861
DpnI GATC 1 cut(s) 526
DpnII GATC 1 cut(s) 524
EaeI YGGCCR 3 cut(s) 138, 171, 666
EagI CGGCCG 1 cut(s) 666
Eam1104I CTCTTC 2 cut(s) 14, 36
EarI CTCTTC 2 cut(s) 14, 36
EclXI CGGCCG 1 cut(s) 666
Eco130I CCWWGG 1 cut(s) 952
Eco24I GRGCYC 1 cut(s) 432
Eco47I GGWCC 4 cut(s) 69, 503, 838, 956
Eco52I CGGCCG 1 cut(s) 666
Eco88I CYCGRG 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 952
EcoT38I GRGCYC 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 952
FaeI CATG 2 cut(s) 389, 446
FatI CATG 2 cut(s) 385, 442
FblI GTMKAC 2 cut(s) 223, 407
Fnu4HI GCNGC 5 cut(s) 161, 274, 392, 662, 984
FokI GGATG 2 cut(s) 727, 740
FriOI GRGCYC 1 cut(s) 432
Fsp4HI GCNGC 5 cut(s) 161, 274, 392, 662, 984
FspBI CTAG 3 cut(s) 132, 491, 557
GlaI GCGC 1 cut(s) 103
GluI GCNGC 5 cut(s) 161, 274, 392, 662, 984
GsaI CCCAGC 1 cut(s) 757
GsuI CTGGAG 1 cut(s) 615
HaeIII GGCC 3 cut(s) 140, 173, 668
HapII CCGG 7 cut(s) 34, 47, 137, 164, 516, 665, 776
HhaI GCGC 1 cut(s) 104
Hin1II CATG 2 cut(s) 389, 446
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 2 cut(s) 224, 708
HindII GTYRAC 2 cut(s) 224, 708
HinfI GANTC 6 cut(s) 30, 50, 197, 358, 413, 772
HpaI GTTAAC 1 cut(s) 708
HpaII CCGG 7 cut(s) 34, 47, 137, 164, 516, 665, 776
HphI GGTGA 2 cut(s) 311, 935
Hpy166II GTNNAC 6 cut(s) 224, 408, 460, 708, 733, 855
Hpy188I TCNGA 5 cut(s) 69, 196, 363, 598, 765
Hpy188III TCNNGA 8 cut(s) 13, 86, 232, 241, 370, 506, 632, 656
Hpy8I GTNNAC 6 cut(s) 224, 408, 460, 708, 733, 855
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 290, 418
HpyCH4III ACNGT 6 cut(s) 78, 121, 464, 503, 694, 913
HpyCH4IV ACGT 3 cut(s) 60, 315, 396
HpyCH4V TGCA 5 cut(s) 385, 394, 460, 700, 891
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 391, 566, 874, 948
HpyF3I CTNAG 3 cut(s) 615, 807, 861
HpySE526I ACGT 3 cut(s) 60, 315, 396
Hsp92II CATG 2 cut(s) 389, 446
HspAI GCGC 1 cut(s) 102
KroI GCCGGC 1 cut(s) 664
KroNI GCCGGC 1 cut(s) 666
KspAI GTTAAC 1 cut(s) 708
Kzo9I GATC 1 cut(s) 524
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 658
Lsp1109I GCAGC 2 cut(s) 285, 378
LweI GCATC 1 cut(s) 855
MabI ACCWGGT 1 cut(s) 145
MaeI CTAG 3 cut(s) 132, 491, 557
MaeII ACGT 3 cut(s) 60, 315, 396
MaeIII GTNAC 3 cut(s) 280, 464, 497
MalI GATC 1 cut(s) 526
MboI GATC 1 cut(s) 524
MboII GAAGA 3 cut(s) 28, 31, 53
MflI RGATCY 1 cut(s) 524
MhlI GDGCHC 2 cut(s) 432, 462
MluCI AATT 4 cut(s) 110, 236, 373, 966
MlyI GAGTC 1 cut(s) 422
MmeI TCCRAC 1 cut(s) 47
MroNI GCCGGC 1 cut(s) 664
MroXI GAANNNNTTC 1 cut(s) 827
MseI TTAA 6 cut(s) 213, 312, 471, 707, 743, 794
MspCI CTTAAG 1 cut(s) 742
MspI CCGG 7 cut(s) 34, 47, 137, 164, 516, 665, 776
MspR9I CCNGG 3 cut(s) 35, 147, 517
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 5 cut(s) 137, 391, 566, 874, 948
NaeI GCCGGC 1 cut(s) 666
NciI CCSGG 2 cut(s) 35, 517
NdeII GATC 1 cut(s) 524
NgoMIV GCCGGC 1 cut(s) 664
NheI GCTAGC 1 cut(s) 556
NlaIII CATG 2 cut(s) 389, 446
NlaIV GGNNCC 7 cut(s) 95, 151, 343, 660, 762, 840, 933
NmeAIII GCCGAG 2 cut(s) 78, 968
NmuCI GTSAC 3 cut(s) 280, 464, 497
PaeR7I CTCGAG 1 cut(s) 11
PciSI GCTCTTC 1 cut(s) 36
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PdiI GCCGGC 1 cut(s) 666
PdmI GAANNNNTTC 1 cut(s) 827
PfeI GAWTC 5 cut(s) 30, 50, 197, 358, 772
PflMI CCANNNNNTGG 1 cut(s) 78
PfoI TCCNGGA 1 cut(s) 33
PkrI GCNGC 5 cut(s) 162, 275, 393, 663, 985
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
Ppu21I YACGTR 1 cut(s) 397
Psp1406I AACGTT 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 145
PspFI CCCAGC 1 cut(s) 753
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 7 cut(s) 95, 151, 343, 660, 762, 840, 933
PspPI GGNCC 4 cut(s) 69, 503, 838, 956
PstI CTGCAG 1 cut(s) 702
PsuI RGATCY 1 cut(s) 524
RsaI GTAC 5 cut(s) 118, 437, 578, 691, 854
RsaNI GTAC 5 cut(s) 117, 436, 577, 690, 853
SalI GTCGAC 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 6 cut(s) 213, 312, 471, 707, 743, 794
SatI GCNGC 5 cut(s) 161, 274, 392, 662, 984
Sau3AI GATC 1 cut(s) 524
Sau96I GGNCC 4 cut(s) 69, 503, 838, 956
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 3 cut(s) 35, 147, 517
SduI GDGCHC 2 cut(s) 432, 462
SexAI ACCWGGT 1 cut(s) 145
SfaNI GCATC 1 cut(s) 855
SfcI CTRYAG 1 cut(s) 698
Sfr274I CTCGAG 1 cut(s) 11
SinI GGWCC 4 cut(s) 69, 503, 838, 956
SlaI CTCGAG 1 cut(s) 11
SmlI CTYRAG 5 cut(s) 11, 230, 368, 431, 742
SmoI CTYRAG 5 cut(s) 11, 230, 368, 431, 742
Sse9I AATT 4 cut(s) 110, 236, 373, 966
SsiI CCGC 3 cut(s) 161, 662, 983
SspMI CTAG 3 cut(s) 132, 491, 557
StyD4I CCNGG 3 cut(s) 33, 145, 515
StyI CCWWGG 1 cut(s) 952
TaaI ACNGT 6 cut(s) 78, 121, 464, 503, 694, 913
TaiI ACGT 3 cut(s) 63, 318, 399
TaqI TCGA 3 cut(s) 12, 85, 223
TaqII GACCGA 1 cut(s) 53
TasI AATT 4 cut(s) 110, 236, 373, 966
TatI WGTACW 3 cut(s) 435, 576, 689
TauI GCSGC 3 cut(s) 163, 664, 986
TfiI GAWTC 5 cut(s) 30, 50, 197, 358, 772
Tru1I TTAA 6 cut(s) 213, 312, 471, 707, 743, 794
Tru9I TTAA 6 cut(s) 213, 312, 471, 707, 743, 794
TscAI CASTG 4 cut(s) 467, 619, 742, 805
TseFI GTSAC 3 cut(s) 280, 464, 497
TseI GCWGC 2 cut(s) 273, 391
Tsp45I GTSAC 3 cut(s) 280, 464, 497
TspDTI ATGAA 3 cut(s) 431, 602, 820
TspRI CASTG 4 cut(s) 467, 619, 742, 805
Van91I CCANNNNNTGG 1 cut(s) 78
Vha464I CTTAAG 1 cut(s) 742
VneI GTGCAC 1 cut(s) 458
VpaK11BI GGWCC 4 cut(s) 69, 503, 838, 956
XapI RAATTY 2 cut(s) 236, 373
XhoI CTCGAG 1 cut(s) 11
XmiI GTMKAC 2 cut(s) 223, 407
XmnI GAANNNNTTC 1 cut(s) 827
XspI CTAG 3 cut(s) 132, 491, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.