Rw2G038330

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001298
Physical Location & Seq
Forward (+)
63283576 .. 63284565
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G038330.1

Sequence Viewer

Length: 990 bp
ATGGAAAAGCTCGAGAAGAAGAGGAAAAGAATTCAGGAGGAAGAGCCGGATTCTGGCAACGTCGGTCGGACCAAACGGTGGGTTCGACAAAGGTTCCTCGGCGCAGGACAATTCGGTACAGTTTTCTTGGCTAGTCCGGCCAAACCAGGTTCCAAACTGCCGCCGGTTATGGCAGTGAAGTCGGCGATGCTCTCGGAATCTGCCGACTTGGTTAAAGAAAGTCGACTTCTCAAGAAATTCAAGAACTGCCCTTTTATCCTTGACACTTACGGCAGTGATGTGACTAAAGATGTTGAAGGTGAGGAGTGGTTCAACGTTTTCTTGGAGTATGCTCAAAGAGGAACCATAGAGGATTGGATTCAGAAACTCAAGAATTTCGGGTTGCATGAGCTGCACGTAAGGAGGTATACACAGTCACTATTGAAGGGGCTCAAGTACATTCATGGAAAGGGTTTTGTGCACTGTGACATTAAGCCTGCCAATGTATTGCTAGTGCGTGACGGTCCTGATGATACCGGGTTTGGATCTTACGTGGCGAAAATTGGGGATTTAGGGCTGGCAAAGAGGGCTGACAAGTACAATGTGATGAAGCGTTCTGATTATATAAATGGCACTGAGTTGTATATGTCTCCAGAAGTATCGCTTCACAACATTCAGGAGCCGCCAGCCGACATCTGGGCATTAGGCTGCACTGTTCTGCAGATGTTAACCGGGATGGAGTTTTGGGATGTGAACACTGACTTAAGAGATGACTGGGGGGTTCCGATTGAGATTCCGATTATCCCTGAAAGGCTGAGCAACGAGGCTAAGGATTTCTTGGGGAAGTGCTTCATATTGGACCCTCTGGAGAGATACACGGCTGAGATGCTTTTGAAGCACCCTTTTATGTGCAAAAGCTTGCGAATATGGACAGTCTCATCTGGTGAATTGGTTACAAGAAGCCGAGTTTGCCAAGGACCAGCTGCAATTCCTCTAATGGGTGCGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

329

Amino Acids

37.26

Weight (kDa)

8.39

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 29 - 296 5.6e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 30 - 290 3.9e-22 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 78
AccI GTMKAC 2 cut(s) 223, 407
AciI CCGC 3 cut(s) 161, 662, 983
AclI AACGTT 1 cut(s) 315
AclWI GGATC 1 cut(s) 532
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 3 cut(s) 30, 236, 373
AfaI GTAC 3 cut(s) 118, 437, 578
AfiI CCNNNNNNNGG 4 cut(s) 53, 78, 675, 977
AflII CTTAAG 1 cut(s) 742
AgsI TTSAA 5 cut(s) 241, 296, 313, 424, 874
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 4 cut(s) 10, 391, 897, 962
AluI AGCT 4 cut(s) 10, 391, 897, 962
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 2 cut(s) 633, 919
Alw44I GTGCAC 1 cut(s) 458
AlwI GGATC 1 cut(s) 532
Ama87I CYCGRG 1 cut(s) 11
AoxI GGCC 1 cut(s) 138
ApaLI GTGCAC 1 cut(s) 458
ApeKI GCWGC 3 cut(s) 391, 687, 962
ApoI RAATTY 3 cut(s) 30, 236, 373
Asp700I GAANNNNTTC 1 cut(s) 827
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 4 cut(s) 69, 503, 838, 956
AsuC2I CCSGG 2 cut(s) 517, 712
AsuHPI GGTGA 2 cut(s) 311, 935
AvaI CYCGRG 1 cut(s) 11
AvaII GGWCC 4 cut(s) 69, 503, 838, 956
BaeGI GKGCMC 1 cut(s) 462
BanII GRGCYC 1 cut(s) 432
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 3 cut(s) 378, 674, 949
BccI CCATC 1 cut(s) 709
BceAI ACGGC 2 cut(s) 286, 873
BcgI CGANNNNNNTGC 2 cut(s) 162, 196
BciT130I CCWGG 1 cut(s) 147
BcnI CCSGG 2 cut(s) 517, 712
BcoDI GTCTC 2 cut(s) 633, 919
BfaI CTAG 2 cut(s) 132, 491
BfmI CTRYAG 1 cut(s) 698
BfrI CTTAAG 1 cut(s) 742
BisI GCNGC 5 cut(s) 161, 392, 662, 688, 963
BlpI GCTNAGC 1 cut(s) 794
BlsI GCNGC 5 cut(s) 162, 393, 663, 689, 964
Bme1390I CCNGG 3 cut(s) 147, 517, 712
Bme18I GGWCC 4 cut(s) 69, 503, 838, 956
BmeT110I CYCGRG 1 cut(s) 11
BmgT120I GGNCC 4 cut(s) 69, 503, 838, 956
BmiI GGNNCC 6 cut(s) 95, 151, 343, 660, 762, 840
BmrFI CCNGG 3 cut(s) 147, 517, 712
BmrI ACTGGG 1 cut(s) 763
BmsI GCATC 2 cut(s) 177, 855
BmuI ACTGGG 1 cut(s) 763
BpmI CTGGAG 2 cut(s) 615, 866
Bpu10I CCTNAGC 1 cut(s) 807
Bpu1102I GCTNAGC 1 cut(s) 794
BpuEI CTTGAG 3 cut(s) 215, 353, 416
BpuMI CCSGG 2 cut(s) 517, 712
BsaAI YACGTR 2 cut(s) 397, 532
BsaJI CCNNGG 2 cut(s) 97, 952
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 78, 675, 977
Bse118I RCCGGY 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 758
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 2 cut(s) 97, 952
BseGI GGATG 2 cut(s) 720, 733
BseLI CCNNNNNNNGG 4 cut(s) 53, 78, 675, 977
BseMII CTCAG 3 cut(s) 606, 785, 852
BseNI ACTGG 1 cut(s) 758
BseRI GAGGAG 1 cut(s) 317
BseSI GKGCMC 1 cut(s) 462
BseXI GCAGC 3 cut(s) 378, 674, 949
BsgI GTGCAG 2 cut(s) 377, 673
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 1 cut(s) 140
BsiEI CGRYCG 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 462
BsiHKCI CYCGRG 1 cut(s) 11
BsiSI CCGG 5 cut(s) 47, 137, 164, 516, 711
BslI CCNNNNNNNGG 4 cut(s) 53, 78, 675, 977
BsmAI GTCTC 2 cut(s) 633, 919
BsnI GGCC 1 cut(s) 140
BsoBI CYCGRG 1 cut(s) 11
Bsp1286I GDGCHC 2 cut(s) 432, 462
Bsp143I GATC 1 cut(s) 524
Bsp1720I GCTNAGC 1 cut(s) 794
BspACI CCGC 3 cut(s) 161, 662, 983
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 3 cut(s) 607, 786, 853
BspLI GGNNCC 6 cut(s) 95, 151, 343, 660, 762, 840
BspMAI CTGCAG 1 cut(s) 702
BspPI GGATC 1 cut(s) 532
BspQI GCTCTTC 1 cut(s) 36
BspTI CTTAAG 1 cut(s) 742
BsrFI RCCGGY 1 cut(s) 163
BsrI ACTGG 1 cut(s) 758
BssAI RCCGGY 1 cut(s) 163
BssECI CCNNGG 2 cut(s) 97, 952
BssMI GATC 1 cut(s) 524
BssNAI GTATAC 1 cut(s) 408
BssT1I CCWWGG 1 cut(s) 952
Bst1107I GTATAC 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 7 cut(s) 78, 121, 414, 464, 503, 694, 913
Bst6I CTCTTC 2 cut(s) 14, 36
BstAFI CTTAAG 1 cut(s) 742
BstAPI GCANNNNNTGC 1 cut(s) 391
BstBAI YACGTR 2 cut(s) 397, 532
BstC8I GCNNGC 4 cut(s) 477, 558, 666, 899
BstDEI CTNAG 4 cut(s) 615, 794, 807, 861
BstF5I GGATG 2 cut(s) 720, 733
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 1 cut(s) 527
BstMAI GTCTC 2 cut(s) 633, 919
BstMBI GATC 1 cut(s) 524
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 5 cut(s) 137, 391, 566, 874, 948
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 3 cut(s) 145, 515, 710
BstSFI CTRYAG 1 cut(s) 698
BstSLI GKGCMC 1 cut(s) 462
BstV1I GCAGC 3 cut(s) 378, 674, 949
BstX2I RGATCY 1 cut(s) 524
BstYI RGATCY 1 cut(s) 524
BstZ17I GTATAC 1 cut(s) 408
BsuRI GGCC 1 cut(s) 140
BtgZI GCGATG 1 cut(s) 200
BtsCI GGATG 2 cut(s) 720, 733
BtsI GCAGTG 2 cut(s) 180, 280
BtsIMutI CAGTG 6 cut(s) 180, 280, 460, 612, 690, 735
Cac8I GCNNGC 4 cut(s) 477, 558, 666, 899
CfoI GCGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 163
Cfr13I GGNCC 4 cut(s) 69, 503, 838, 956
CsiI ACCWGGT 1 cut(s) 145
Csp6I GTAC 3 cut(s) 117, 436, 577
CviAII CATG 2 cut(s) 386, 443
CviQI GTAC 3 cut(s) 117, 436, 577
DdeI CTNAG 4 cut(s) 615, 794, 807, 861
DpnI GATC 1 cut(s) 526
DpnII GATC 1 cut(s) 524
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 2 cut(s) 14, 36
EarI CTCTTC 2 cut(s) 14, 36
Eco130I CCWWGG 1 cut(s) 952
Eco24I GRGCYC 1 cut(s) 432
Eco47I GGWCC 4 cut(s) 69, 503, 838, 956
Eco88I CYCGRG 1 cut(s) 11
EcoRI GAATTC 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 952
EcoT38I GRGCYC 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 952
FaeI CATG 2 cut(s) 389, 446
FalI AAGNNNNNCTT 4 cut(s) 627, 659, 800, 832
FatI CATG 2 cut(s) 385, 442
FblI GTMKAC 2 cut(s) 223, 407
Fnu4HI GCNGC 5 cut(s) 161, 392, 662, 688, 963
FokI GGATG 2 cut(s) 727, 740
FriOI GRGCYC 1 cut(s) 432
Fsp4HI GCNGC 5 cut(s) 161, 392, 662, 688, 963
FspBI CTAG 2 cut(s) 132, 491
GlaI GCGC 1 cut(s) 103
GluI GCNGC 5 cut(s) 161, 392, 662, 688, 963
GsuI CTGGAG 2 cut(s) 615, 866
HaeIII GGCC 1 cut(s) 140
HapII CCGG 5 cut(s) 47, 137, 164, 516, 711
HhaI GCGC 1 cut(s) 104
Hin1II CATG 2 cut(s) 389, 446
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 2 cut(s) 224, 708
HindII GTYRAC 2 cut(s) 224, 708
HindIII AAGCTT 1 cut(s) 895
HinfI GANTC 4 cut(s) 50, 197, 358, 772
HpaI GTTAAC 1 cut(s) 708
HpaII CCGG 5 cut(s) 47, 137, 164, 516, 711
HphI GGTGA 2 cut(s) 311, 935
Hpy166II GTNNAC 5 cut(s) 224, 408, 460, 708, 733
Hpy188I TCNGA 6 cut(s) 69, 196, 363, 598, 765, 777
Hpy188III TCNNGA 9 cut(s) 13, 35, 232, 241, 370, 506, 632, 656, 845
Hpy8I GTNNAC 5 cut(s) 224, 408, 460, 708, 733
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 290, 418
HpyCH4III ACNGT 7 cut(s) 78, 121, 414, 464, 503, 694, 913
HpyCH4IV ACGT 4 cut(s) 60, 315, 396, 531
HpyCH4V TGCA 7 cut(s) 385, 394, 460, 690, 700, 891, 965
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 391, 566, 874, 948
HpyF3I CTNAG 4 cut(s) 615, 794, 807, 861
HpySE526I ACGT 4 cut(s) 60, 315, 396, 531
Hsp92II CATG 2 cut(s) 389, 446
HspAI GCGC 1 cut(s) 102
KspAI GTTAAC 1 cut(s) 708
Kzo9I GATC 1 cut(s) 524
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 658
Lsp1109I GCAGC 3 cut(s) 378, 674, 949
LweI GCATC 2 cut(s) 177, 855
MabI ACCWGGT 1 cut(s) 145
MaeI CTAG 2 cut(s) 132, 491
MaeII ACGT 4 cut(s) 60, 315, 396, 531
MaeIII GTNAC 5 cut(s) 280, 414, 464, 497, 931
MalI GATC 1 cut(s) 526
MboI GATC 1 cut(s) 524
MboII GAAGA 3 cut(s) 28, 31, 53
MflI RGATCY 1 cut(s) 524
MhlI GDGCHC 2 cut(s) 432, 462
MluCI AATT 7 cut(s) 30, 110, 236, 373, 540, 926, 966
MmeI TCCRAC 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 827
MseI TTAA 4 cut(s) 213, 471, 707, 743
MspA1I CMGCKG 1 cut(s) 962
MspCI CTTAAG 1 cut(s) 742
MspI CCGG 5 cut(s) 47, 137, 164, 516, 711
MspR9I CCNGG 3 cut(s) 147, 517, 712
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 5 cut(s) 137, 391, 566, 874, 948
NciI CCSGG 2 cut(s) 517, 712
NdeII GATC 1 cut(s) 524
NlaIII CATG 2 cut(s) 389, 446
NlaIV GGNNCC 6 cut(s) 95, 151, 343, 660, 762, 840
NmeAIII GCCGAG 2 cut(s) 78, 968
NmuCI GTSAC 4 cut(s) 280, 414, 464, 497
PaeR7I CTCGAG 1 cut(s) 11
PciSI GCTCTTC 1 cut(s) 36
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 827
PfeI GAWTC 4 cut(s) 50, 197, 358, 772
PflMI CCANNNNNTGG 1 cut(s) 78
PkrI GCNGC 5 cut(s) 162, 393, 663, 689, 964
Ppu21I YACGTR 2 cut(s) 397, 532
Psp1406I AACGTT 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 6 cut(s) 95, 151, 343, 660, 762, 840
PspPI GGNCC 4 cut(s) 69, 503, 838, 956
PstI CTGCAG 1 cut(s) 702
PsuI RGATCY 1 cut(s) 524
PvuII CAGCTG 1 cut(s) 962
RsaI GTAC 3 cut(s) 118, 437, 578
RsaNI GTAC 3 cut(s) 117, 436, 577
SalI GTCGAC 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 4 cut(s) 213, 471, 707, 743
SatI GCNGC 5 cut(s) 161, 392, 662, 688, 963
Sau3AI GATC 1 cut(s) 524
Sau96I GGNCC 4 cut(s) 69, 503, 838, 956
ScrFI CCNGG 3 cut(s) 147, 517, 712
SduI GDGCHC 2 cut(s) 432, 462
SexAI ACCWGGT 1 cut(s) 145
SfaNI GCATC 2 cut(s) 177, 855
SfcI CTRYAG 1 cut(s) 698
Sfr274I CTCGAG 1 cut(s) 11
SinI GGWCC 4 cut(s) 69, 503, 838, 956
SlaI CTCGAG 1 cut(s) 11
SmlI CTYRAG 5 cut(s) 11, 230, 368, 431, 742
SmoI CTYRAG 5 cut(s) 11, 230, 368, 431, 742
Sse9I AATT 7 cut(s) 30, 110, 236, 373, 540, 926, 966
SsiI CCGC 3 cut(s) 161, 662, 983
SspMI CTAG 2 cut(s) 132, 491
StyD4I CCNGG 3 cut(s) 145, 515, 710
StyI CCWWGG 1 cut(s) 952
TaaI ACNGT 7 cut(s) 78, 121, 414, 464, 503, 694, 913
TaiI ACGT 4 cut(s) 63, 318, 399, 534
TaqI TCGA 3 cut(s) 12, 85, 223
TaqII GACCGA 1 cut(s) 53
TasI AATT 7 cut(s) 30, 110, 236, 373, 540, 926, 966
TatI WGTACW 2 cut(s) 435, 576
TauI GCSGC 2 cut(s) 163, 664
TfiI GAWTC 4 cut(s) 50, 197, 358, 772
Tru1I TTAA 4 cut(s) 213, 471, 707, 743
Tru9I TTAA 4 cut(s) 213, 471, 707, 743
TscAI CASTG 6 cut(s) 180, 280, 467, 619, 697, 742
TseFI GTSAC 4 cut(s) 280, 414, 464, 497
TseI GCWGC 3 cut(s) 391, 687, 962
Tsp45I GTSAC 4 cut(s) 280, 414, 464, 497
TspDTI ATGAA 3 cut(s) 431, 602, 820
TspRI CASTG 6 cut(s) 180, 280, 467, 619, 697, 742
Van91I CCANNNNNTGG 1 cut(s) 78
Vha464I CTTAAG 1 cut(s) 742
VneI GTGCAC 1 cut(s) 458
VpaK11BI GGWCC 4 cut(s) 69, 503, 838, 956
XapI RAATTY 3 cut(s) 30, 236, 373
XcmI CCANNNNNNNNNTGG 1 cut(s) 672
XhoI CTCGAG 1 cut(s) 11
XmiI GTMKAC 2 cut(s) 223, 407
XmnI GAANNNNTTC 1 cut(s) 827
XspI CTAG 2 cut(s) 132, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.