Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001298

Physical Location & Seq

Genomic Coordinates Forward (+)

16641320 .. 16642729

Gene Structure 1410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G152700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGTTCGAGTTCAAGGCCGAAGAAAGAACAGAGCTTGTCGGTTGCTGGCCGTGAGTGGGTTCGAGGCCGGATACTTGGAAAAGGGGGGTTTGGGTCGGTGTATTTGGGTTGGGTCAAAAAACCCAATTTGAGAGCCGATGTTTTGCCCTCAATTTTCGCTGTGAAGTCGACATTATACTGTGATGCGCTTGAGTTGGTGAGGGAAAATTCACTTCTTGACATATTTAGCAACTGCCCGTTTATCATCCATCGCTATGGAGATGATGTAACGGCTGGTGTTGATGGCAAAAAGGTATTCAATATGTTCATGGAATATGCCGATGGAGGAACAATGAGGGATTTGATTAACAAGTCTGGGGGGTTGCCTGAATTTCAAGTAAGAAAGTATACAGAGGCAATTTTGAAAGGGGTTAAGCACATTCATGAAATGGGTTATGTGCATTGCGATTTGAAGCCTGAGAATATATTACTCGTCTCCAAAACTGATGCCGGTGGTTCTAAATTTGTGCCCAAACTTGGAGACTTGGGTCTGGCAAAGAGGATTATAGAGAAGCGTTCTGGAGGCACTACACTGTATTGGTCTCCAGAAACTGTGCTTCAAAATATTCAGCTGCAACCTTCTGATATTTGGGCATTGGGCTGTGTTGTGCTTATGATGTTGACTGGGAGGAAGCCATGGGATTTGAAAGCCGGGGCGAGACCTTGGGACCTAATGCTTCAGATTGCTTCAAAATCTCCCACTATTCCTGTTTGGTTATCAGAAGAGGCTAAAGATTTCTTGGGAAAGTGCTTTGTGTGGAGCCCTTCTGAGAGGTTCACAGCTGCTAAGCTTTTGAATCATCCATTTGTGACTAATTTGGATCCAGTAAAGGAACTCAATTCAGTGTCGTCGTCGCCTTCTGAGCAACAGATTCCTTTGGGATTCAAGACCTGTCATTCCAAATCAAACCGCTGTTTGCCAAAAGCCATCGGCTTTCCCTATAATTGGTGCTGCTTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

335

Amino Acids

37.11

Weight (kDa)

9.17

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35583 FvH4_6g36890 FvH4_7g03770 FvH4_7g03770 FvH4_7g04440 FvH4_7g04790
malus_domestica	MD09G1165900.v1.1 MD17G1161800.v1.1
prunus_persica	Prupe.3G023500_v2.0.a1 Prupe.3G023600_v2.0.a1 Prupe.3G058200_v2.0.a1 Prupe.3G058400_v2.0.a1 Prupe.3G109900_v2.0.a1 Prupe.3G111200_v2.0.a1 Prupe.3G111500_v2.0.a1 Prupe.3G152600_v2.0.a1 Prupe.3G152700_v2.0.a1 Prupe.3G158300_v2.0.a1 Prupe.5G038600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147421 RchiOBHm_Chr2g0149301 RchiOBHm_Chr2g0149321
rosa_laevigata	RLG00000008572 RLG00000008574 RLG00000008575 RLG00000008577 RLG00000008579 RLG00000008580 RLG00000020260 RLG00000020391 RLG00000020392
rosa_multiflora	Rmu_sc0000873.1_g000012 Rmu_sc0000873.1_g000015 Rmu_sc0001159.1_g000028
rosa_roxburghii	Rroxscaffold_2G00098220 Rroxscaffold_2G00098230
rosa_rugosa	Rorug02G0400000.1 Rorug02G0410500 Rorug04G0092100 Rorug04G0092200 Rorug04G0114400
rosa_samantha	Rh2AG456800 Rh2AG471200 Rh2BG469600 Rh2CG444300 Rh2CG457100 Rh2DG479100 Rh2DG492400 Rh2DG492500 Rh4BG152900 Rh4BG153500 Rh7AG365800 Rh7AG366200 Rh7AG366400
rosa_wichuraiana	Rw2G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	170, 389
AciI	CCGC	1 cut(s)	952
AclWI	GGATC	2 cut(s)	857, 870
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	3 cut(s)	208, 371, 503
AcuI	CTGAAG	1 cut(s)	704
AfiI	CCNNNNNNNGG	3 cut(s)	58, 518, 987
AluBI	AGCT	5 cut(s)	36, 613, 824, 832, 1001
AluI	AGCT	5 cut(s)	36, 613, 824, 832, 1001
Alw26I	GTCTC	4 cut(s)	481, 516, 588, 694
AlwI	GGATC	2 cut(s)	857, 870
AlwNI	CAGNNNCTG	1 cut(s)	593
AoxI	GGCC	3 cut(s)	17, 49, 67
ApeKI	GCWGC	3 cut(s)	613, 824, 993
ApoI	RAATTY	3 cut(s)	208, 371, 503
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	709
AsuC2I	CCSGG	1 cut(s)	694
AsuHPI	GGTGA	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	709
BaeGI	GKGCMC	1 cut(s)	513
BamHI	GGATCC	1 cut(s)	862
BanII	GRGCYC	1 cut(s)	806
BbvI	GCAGC	3 cut(s)	600, 811, 980
BccI	CCATC	4 cut(s)	258, 278, 317, 977
BceAI	ACGGC	2 cut(s)	36, 288
BciVI	GTATCC	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	694
BcoDI	GTCTC	4 cut(s)	481, 516, 588, 694
BfuI	GTATCC	1 cut(s)	66
BisI	GCNGC	3 cut(s)	614, 825, 994
BlpI	GCTNAGC	2 cut(s)	828, 997
BlsI	GCNGC	3 cut(s)	615, 826, 995
Bme1390I	CCNGG	1 cut(s)	694
Bme18I	GGWCC	1 cut(s)	709
BmgT120I	GGNCC	1 cut(s)	709
BmiI	GGNNCC	3 cut(s)	710, 803, 864
BmrFI	CCNGG	1 cut(s)	694
BmrI	ACTGGG	1 cut(s)	675
BmsI	GCATC	2 cut(s)	175, 478
BmuI	ACTGGG	1 cut(s)	675
BoxI	GACNNNNGTC	1 cut(s)	528
BpmI	CTGGAG	2 cut(s)	570, 582
Bpu1102I	GCTNAGC	2 cut(s)	828, 997
BpuEI	CTTGAG	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	694
BsaI	GGTCTC	2 cut(s)	588, 694
BsaJI	CCNNGG	3 cut(s)	677, 693, 704
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 518, 987
Bse118I	RCCGGY	1 cut(s)	491
Bse1I	ACTGG	2 cut(s)	670, 866
Bse3DI	GCAATG	1 cut(s)	442
BseDI	CCNNGG	3 cut(s)	677, 693, 704
BseGI	GGATG	2 cut(s)	246, 841
BseLI	CCNNNNNNNGG	3 cut(s)	58, 518, 987
BseMI	GCAATG	1 cut(s)	442
BseMII	CTCAG	3 cut(s)	450, 801, 894
BseNI	ACTGG	2 cut(s)	670, 866
BseSI	GKGCMC	1 cut(s)	513
BseXI	GCAGC	3 cut(s)	600, 811, 980
BshFI	GGCC	3 cut(s)	19, 51, 69
BsiSI	CCGG	3 cut(s)	70, 492, 693
BslFI	GGGAC	1 cut(s)	722
BslI	CCNNNNNNNGG	3 cut(s)	58, 518, 987
BsmAI	GTCTC	4 cut(s)	481, 516, 588, 694
BsmBI	CGTCTC	1 cut(s)	481
BsmFI	GGGAC	1 cut(s)	722
BsnI	GGCC	3 cut(s)	19, 51, 69
Bso31I	GGTCTC	2 cut(s)	588, 694
Bsp1286I	GDGCHC	2 cut(s)	513, 806
Bsp143I	GATC	1 cut(s)	862
Bsp1720I	GCTNAGC	2 cut(s)	828, 997
Bsp19I	CCATGG	1 cut(s)	677
BspACI	CCGC	1 cut(s)	952
BspANI	GGCC	3 cut(s)	19, 51, 69
BspCNI	CTCAG	3 cut(s)	451, 802, 895
BspHI	TCATGA	1 cut(s)	424
BspLI	GGNNCC	3 cut(s)	710, 803, 864
BspPI	GGATC	2 cut(s)	857, 870
BspTNI	GGTCTC	2 cut(s)	588, 694
BsrDI	GCAATG	1 cut(s)	442
BsrFI	RCCGGY	1 cut(s)	491
BsrI	ACTGG	2 cut(s)	670, 866
BssAI	RCCGGY	1 cut(s)	491
BssECI	CCNNGG	3 cut(s)	677, 693, 704
BssMI	GATC	1 cut(s)	862
BssNAI	GTATAC	1 cut(s)	390
BssT1I	CCWWGG	2 cut(s)	677, 704
Bst1107I	GTATAC	1 cut(s)	390
Bst4CI	ACNGT	3 cut(s)	182, 576, 595
Bst6I	CTCTTC	1 cut(s)	759
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	5 cut(s)	459, 810, 828, 903, 997
BstDSI	CCRYGG	1 cut(s)	677
BstF5I	GGATG	2 cut(s)	246, 841
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	1 cut(s)	865
BstMAI	GTCTC	4 cut(s)	481, 516, 588, 694
BstMBI	GATC	1 cut(s)	862
BstMWI	GCNNNNNNNGC	1 cut(s)	904
BstPAI	GACNNNNGTC	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	692
BstSLI	GKGCMC	1 cut(s)	513
BstV1I	GCAGC	3 cut(s)	600, 811, 980
BstX2I	RGATCY	1 cut(s)	862
BstXI	CCANNNNNNTGG	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	862
BstZ17I	GTATAC	1 cut(s)	390
BsuI	GTATCC	1 cut(s)	66
BsuRI	GGCC	3 cut(s)	19, 51, 69
BtgI	CCRYGG	1 cut(s)	677
BtgZI	GCGATG	1 cut(s)	236
BtsCI	GGATG	2 cut(s)	246, 841
BtsIMutI	CAGTG	2 cut(s)	572, 891
Cac8I	GCNNGC	1 cut(s)	49
CaiI	CAGNNNCTG	1 cut(s)	593
CciI	TCATGA	1 cut(s)	424
CfoI	GCGC	1 cut(s)	190
Cfr10I	RCCGGY	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	709
CviAII	CATG	3 cut(s)	310, 425, 678
DdeI	CTNAG	5 cut(s)	459, 810, 828, 903, 997
DpnI	GATC	1 cut(s)	864
DpnII	GATC	1 cut(s)	862
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	759
EarI	CTCTTC	1 cut(s)	759
Eco130I	CCWWGG	2 cut(s)	677, 704
Eco24I	GRGCYC	1 cut(s)	806
Eco31I	GGTCTC	2 cut(s)	588, 694
Eco47I	GGWCC	1 cut(s)	709
Eco57I	CTGAAG	1 cut(s)	704
EcoO109I	RGGNCCY	1 cut(s)	709
EcoT14I	CCWWGG	2 cut(s)	677, 704
EcoT38I	GRGCYC	1 cut(s)	806
ErhI	CCWWGG	2 cut(s)	677, 704
Esp3I	CGTCTC	1 cut(s)	481
FaeI	CATG	3 cut(s)	313, 428, 681
FaqI	GGGAC	1 cut(s)	722
FatI	CATG	3 cut(s)	309, 424, 677
FblI	GTMKAC	2 cut(s)	170, 389
Fnu4HI	GCNGC	3 cut(s)	614, 825, 994
FokI	GGATG	2 cut(s)	233, 828
FriOI	GRGCYC	1 cut(s)	806
Fsp4HI	GCNGC	3 cut(s)	614, 825, 994
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	3 cut(s)	614, 825, 994
GsuI	CTGGAG	2 cut(s)	570, 582
HaeIII	GGCC	3 cut(s)	19, 51, 69
HapII	CCGG	3 cut(s)	70, 492, 693
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	3 cut(s)	313, 428, 681
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HincII	GTYRAC	2 cut(s)	171, 663
HindII	GTYRAC	2 cut(s)	171, 663
HindIII	AAGCTT	1 cut(s)	830
HinfI	GANTC	3 cut(s)	838, 913, 924
HpaII	CCGG	3 cut(s)	70, 492, 693
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	4 cut(s)	171, 390, 663, 819
Hpy188I	TCNGA	5 cut(s)	625, 723, 763, 811, 904
Hpy188III	TCNNGA	5 cut(s)	218, 425, 561, 587, 928
Hpy8I	GTNNAC	4 cut(s)	171, 390, 663, 819
Hpy99I	CGWCG	2 cut(s)	895, 898
HpyAV	CCTTC	3 cut(s)	630, 816, 909
HpyCH4III	ACNGT	3 cut(s)	182, 576, 595
HpyCH4V	TGCA	2 cut(s)	442, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	904
HpyF3I	CTNAG	5 cut(s)	459, 810, 828, 903, 997
Hsp92II	CATG	3 cut(s)	313, 428, 681
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	1 cut(s)	862
LmnI	GCTCC	1 cut(s)	801
Lsp1109I	GCAGC	3 cut(s)	600, 811, 980
LweI	GCATC	2 cut(s)	175, 478
MaeIII	GTNAC	2 cut(s)	268, 850
MalI	GATC	1 cut(s)	864
MboI	GATC	1 cut(s)	862
MboII	GAAGA	2 cut(s)	34, 776
MflI	RGATCY	1 cut(s)	862
MhlI	GDGCHC	2 cut(s)	513, 806
MluCI	AATT	9 cut(s)	127, 153, 208, 371, 399, 503, 856, 880, 985
MseI	TTAA	2 cut(s)	348, 414
MslI	CAYNNNNRTG	2 cut(s)	255, 423
MspA1I	CMGCKG	3 cut(s)	613, 824, 954
MspI	CCGG	3 cut(s)	70, 492, 693
MspR9I	CCNGG	1 cut(s)	694
MwoI	GCNNNNNNNGC	1 cut(s)	904
NciI	CCSGG	1 cut(s)	694
NcoI	CCATGG	1 cut(s)	677
NdeII	GATC	1 cut(s)	862
NlaIII	CATG	3 cut(s)	313, 428, 681
NlaIV	GGNNCC	3 cut(s)	710, 803, 864
NmuCI	GTSAC	1 cut(s)	850
PagI	TCATGA	1 cut(s)	424
PfeI	GAWTC	3 cut(s)	838, 913, 924
PkrI	GCNGC	3 cut(s)	615, 826, 995
PpuMI	RGGWCCY	1 cut(s)	709
PshAI	GACNNNNGTC	1 cut(s)	528
Psp5II	RGGWCCY	1 cut(s)	709
PspN4I	GGNNCC	3 cut(s)	710, 803, 864
PspPI	GGNCC	1 cut(s)	709
PspPPI	RGGWCCY	1 cut(s)	709
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	1 cut(s)	862
PvuII	CAGCTG	2 cut(s)	613, 824
RseI	CAYNNNNRTG	2 cut(s)	255, 423
SalI	GTCGAC	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	348, 414
SatI	GCNGC	3 cut(s)	614, 825, 994
Sau3AI	GATC	1 cut(s)	862
Sau96I	GGNCC	1 cut(s)	709
ScrFI	CCNGG	1 cut(s)	694
SduI	GDGCHC	2 cut(s)	513, 806
SfaNI	GCATC	2 cut(s)	175, 478
SinI	GGWCC	1 cut(s)	709
SmiMI	CAYNNNNRTG	2 cut(s)	255, 423
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	9 cut(s)	127, 153, 208, 371, 399, 503, 856, 880, 985
SsiI	CCGC	1 cut(s)	952
SspI	AATATT	1 cut(s)	607
StyD4I	CCNGG	1 cut(s)	692
StyI	CCWWGG	2 cut(s)	677, 704
TaaI	ACNGT	3 cut(s)	182, 576, 595
TaqI	TCGA	3 cut(s)	8, 64, 170
TasI	AATT	9 cut(s)	127, 153, 208, 371, 399, 503, 856, 880, 985
TfiI	GAWTC	3 cut(s)	838, 913, 924
Tru1I	TTAA	2 cut(s)	348, 414
Tru9I	TTAA	2 cut(s)	348, 414
TscAI	CASTG	2 cut(s)	579, 891
TseFI	GTSAC	1 cut(s)	850
TseI	GCWGC	3 cut(s)	613, 824, 993
Tsp45I	GTSAC	1 cut(s)	850
TspDTI	ATGAA	3 cut(s)	298, 413, 441
TspRI	CASTG	2 cut(s)	579, 891
VpaK11BI	GGWCC	1 cut(s)	709
XapI	RAATTY	3 cut(s)	208, 371, 503
XmiI	GTMKAC	2 cut(s)	170, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.