Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001298

Physical Location & Seq

Genomic Coordinates Forward (+)

16637288 .. 16638796

Gene Structure 1509 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G152600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGTCAGAGTTCAAGGCCAAAGAAAGAACAGAGCTTGTCGGTTGCTGGGCGAGAGTGGGTTCGAGGCCGGATGCTCGGAAAAGGGGGGTTTGGGTCGGTGTATTTGGGTTGGGTCAAAAAACCCAATATGTGCGCCGATTCCTTGCCCTCAATTTTCGCAGTGAAGTCGACATTATACTGTGATGCGCTTGAGCTGGTGACGGAAAATTCAATTCTTGGCACGTTTAGTAGCTGTCCATTTATCATCCACCGCTATGGAGATGATGTGACTGCTGGTGTTGATGGTAATAAGGTATTCAATATGTTCATGGAGTATGCTGATGGAGGAACAATGAGGGATTTGATTAACAATTCTGGGGGTTCTGGGTTGCCTGAATTTCAAGTAAGGAAGTACACAGAGGCGATTTTGCAAGGGGTTAAGCACATTCATGAAATGGGTTATGTGCATTGCGATTTGAAGCCTGAGAATATTTTACTTGTCACCAAAAGTGATTCTGGTGGATCTGAATTTGTGCCTAAAATTGGGGACTTGGGTCTGACAAAGAGGGTTATAGAGGAGCGTGCTGGAGGCACTACAATGTATTGGTCTCCAGAAACTGTCATTCAAGATATTCAGCAGCAACCTTCTGATATTTGGGCTCTAGGGTGTGTGGTGCTCAACATGTTGACTGGGAAGCAGCCATGGGATTTGAAAGCTGGGGCGAGACCTTGGGACCTCATGCTTCAGATTGCTTCAAAATCTCCCACCATTCCTGTTTGGTTATCAGATGAGGCTAAAGATTTCTTAGGAAAGTGCTTTGTGTGGAGCCCTTCTGAGAGGTTCACAGCTGCTAAGCTATTGAATCATCCATTTGTGACTAATCTGGATCCAGTAAAGGAACTCTCTTCGGTGTCATCATCGTCTTCTAAGAAGCAGATTCTTCCTTTGGGTTCCAAGACCTGTCATTCCAAATCAAACCACTGTTTGCCAAAAGCCACCCGCTTTCCCTATAATTGGTCCTGCCTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

338

Amino Acids

37.15

Weight (kDa)

8.48

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35583 FvH4_6g36890 FvH4_7g03770 FvH4_7g03770 FvH4_7g04440 FvH4_7g04790
malus_domestica	MD09G1165900.v1.1 MD17G1161800.v1.1
prunus_persica	Prupe.3G023500_v2.0.a1 Prupe.3G023600_v2.0.a1 Prupe.3G058200_v2.0.a1 Prupe.3G058400_v2.0.a1 Prupe.3G109900_v2.0.a1 Prupe.3G111200_v2.0.a1 Prupe.3G111500_v2.0.a1 Prupe.3G152600_v2.0.a1 Prupe.3G152700_v2.0.a1 Prupe.3G158300_v2.0.a1 Prupe.5G038600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147421 RchiOBHm_Chr2g0149301 RchiOBHm_Chr2g0149321
rosa_laevigata	RLG00000008572 RLG00000008574 RLG00000008575 RLG00000008577 RLG00000008579 RLG00000008580 RLG00000020260 RLG00000020391 RLG00000020392
rosa_multiflora	Rmu_sc0000873.1_g000012 Rmu_sc0000873.1_g000015 Rmu_sc0001159.1_g000028
rosa_roxburghii	Rroxscaffold_2G00098220 Rroxscaffold_2G00098230
rosa_rugosa	Rorug02G0400000.1 Rorug02G0410500 Rorug04G0092100 Rorug04G0092200 Rorug04G0114400
rosa_samantha	Rh2AG456800 Rh2AG471200 Rh2BG469600 Rh2CG444300 Rh2CG457100 Rh2DG479100 Rh2DG492400 Rh2DG492500 Rh4BG152900 Rh4BG153500 Rh7AG365800 Rh7AG366200 Rh7AG366400
rosa_wichuraiana	Rw2G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	170
AciI	CCGC	2 cut(s)	253, 982
AclWI	GGATC	3 cut(s)	511, 863, 876
AcsI	RAATTY	3 cut(s)	208, 377, 509
AcuI	CTGAAG	1 cut(s)	710
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	2 cut(s)	524, 996
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	9 cut(s)	15, 213, 301, 383, 460, 608, 694, 738, 844
AluBI	AGCT	7 cut(s)	36, 196, 234, 698, 830, 838, 1010
AluI	AGCT	7 cut(s)	36, 196, 234, 698, 830, 838, 1010
Alw21I	GWGCWC	1 cut(s)	660
Alw26I	GTCTC	2 cut(s)	594, 700
AlwI	GGATC	3 cut(s)	511, 863, 876
AlwNI	CAGNNNCTG	1 cut(s)	599
AoxI	GGCC	2 cut(s)	17, 67
ApeKI	GCWGC	3 cut(s)	619, 679, 830
ApoI	RAATTY	3 cut(s)	208, 377, 509
AspLEI	GCGC	2 cut(s)	137, 190
AspS9I	GGNCC	2 cut(s)	715, 999
AsuHPI	GGTGA	2 cut(s)	211, 475
AvaII	GGWCC	2 cut(s)	715, 999
BamHI	GGATCC	1 cut(s)	868
BanII	GRGCYC	2 cut(s)	643, 812
BbsI	GAAGAC	1 cut(s)	897
Bbv12I	GWGCWC	1 cut(s)	660
BbvI	GCAGC	3 cut(s)	631, 691, 817
BccI	CCATC	2 cut(s)	278, 317
BcgI	CGANNNNNNTGC	2 cut(s)	150, 184
BcoDI	GTCTC	2 cut(s)	594, 700
BfaI	CTAG	2 cut(s)	644, 1007
BisI	GCNGC	3 cut(s)	620, 680, 831
BlpI	GCTNAGC	1 cut(s)	834
BlsI	GCNGC	3 cut(s)	621, 681, 832
Bme18I	GGWCC	2 cut(s)	715, 999
BmgT120I	GGNCC	2 cut(s)	715, 999
BmiI	GGNNCC	4 cut(s)	716, 809, 870, 934
BmrI	ACTGGG	1 cut(s)	681
BmsI	GCATC	2 cut(s)	63, 175
BmuI	ACTGGG	1 cut(s)	681
BoxI	GACNNNNGTC	1 cut(s)	534
BpiI	GAAGAC	1 cut(s)	897
BpmI	CTGGAG	2 cut(s)	576, 588
Bpu1102I	GCTNAGC	1 cut(s)	834
BpuEI	CTTGAG	1 cut(s)	212
BsaI	GGTCTC	2 cut(s)	594, 700
BsaJI	CCNNGG	2 cut(s)	683, 710
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	2 cut(s)	524, 996
Bse1I	ACTGG	2 cut(s)	676, 872
Bse3DI	GCAATG	1 cut(s)	448
BseDI	CCNNGG	2 cut(s)	683, 710
BseGI	GGATG	3 cut(s)	78, 246, 847
BseLI	CCNNNNNNNGG	2 cut(s)	524, 996
BseMI	GCAATG	1 cut(s)	448
BseMII	CTCAG	2 cut(s)	456, 807
BseNI	ACTGG	2 cut(s)	676, 872
BseRI	GAGGAG	1 cut(s)	572
BseXI	GCAGC	3 cut(s)	631, 691, 817
BseYI	CCCAGC	2 cut(s)	47, 698
BshFI	GGCC	2 cut(s)	19, 69
BsiHKAI	GWGCWC	1 cut(s)	660
BsiSI	CCGG	1 cut(s)	70
BslFI	GGGAC	2 cut(s)	542, 728
BslI	CCNNNNNNNGG	2 cut(s)	524, 996
BsmAI	GTCTC	2 cut(s)	594, 700
BsmFI	GGGAC	2 cut(s)	542, 728
BsnI	GGCC	2 cut(s)	19, 69
Bso31I	GGTCTC	2 cut(s)	594, 700
Bsp1286I	GDGCHC	3 cut(s)	643, 660, 812
Bsp143I	GATC	2 cut(s)	503, 868
Bsp1720I	GCTNAGC	1 cut(s)	834
Bsp19I	CCATGG	1 cut(s)	683
BspACI	CCGC	2 cut(s)	253, 982
BspANI	GGCC	2 cut(s)	19, 69
BspCNI	CTCAG	2 cut(s)	457, 808
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	4 cut(s)	716, 809, 870, 934
BspPI	GGATC	3 cut(s)	511, 863, 876
BspTNI	GGTCTC	2 cut(s)	594, 700
BsrDI	GCAATG	1 cut(s)	448
BsrI	ACTGG	2 cut(s)	676, 872
BssECI	CCNNGG	2 cut(s)	683, 710
BssMI	GATC	2 cut(s)	503, 868
BssT1I	CCWWGG	2 cut(s)	683, 710
Bst4CI	ACNGT	3 cut(s)	182, 601, 965
Bst6I	CTCTTC	1 cut(s)	892
BstC8I	GCNNGC	1 cut(s)	564
BstDEI	CTNAG	5 cut(s)	465, 787, 816, 834, 909
BstDSI	CCRYGG	1 cut(s)	683
BstF5I	GGATG	3 cut(s)	78, 246, 847
BstHHI	GCGC	2 cut(s)	137, 190
BstKTI	GATC	2 cut(s)	506, 871
BstMAI	GTCTC	2 cut(s)	594, 700
BstMBI	GATC	2 cut(s)	503, 868
BstNSI	RCATGY	1 cut(s)	667
BstPAI	GACNNNNGTC	1 cut(s)	534
BstV1I	GCAGC	3 cut(s)	631, 691, 817
BstV2I	GAAGAC	1 cut(s)	897
BstX2I	RGATCY	2 cut(s)	503, 868
BstXI	CCANNNNNNTGG	1 cut(s)	257
BstYI	RGATCY	2 cut(s)	503, 868
BsuRI	GGCC	2 cut(s)	19, 69
BtgI	CCRYGG	1 cut(s)	683
BtsCI	GGATG	3 cut(s)	78, 246, 847
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	168, 961
Cac8I	GCNNGC	1 cut(s)	564
CaiI	CAGNNNCTG	1 cut(s)	599
CciI	TCATGA	1 cut(s)	430
CfoI	GCGC	2 cut(s)	137, 190
Cfr13I	GGNCC	2 cut(s)	715, 999
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	5 cut(s)	310, 431, 664, 684, 721
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	5 cut(s)	465, 787, 816, 834, 909
DpnI	GATC	2 cut(s)	505, 870
DpnII	GATC	2 cut(s)	503, 868
Eam1104I	CTCTTC	1 cut(s)	892
EarI	CTCTTC	1 cut(s)	892
Eco130I	CCWWGG	2 cut(s)	683, 710
Eco24I	GRGCYC	2 cut(s)	643, 812
Eco31I	GGTCTC	2 cut(s)	594, 700
Eco47I	GGWCC	2 cut(s)	715, 999
Eco57I	CTGAAG	1 cut(s)	710
EcoO109I	RGGNCCY	1 cut(s)	715
EcoT14I	CCWWGG	2 cut(s)	683, 710
EcoT38I	GRGCYC	2 cut(s)	643, 812
ErhI	CCWWGG	2 cut(s)	683, 710
FaeI	CATG	5 cut(s)	313, 434, 667, 687, 724
FaqI	GGGAC	2 cut(s)	542, 728
FatI	CATG	5 cut(s)	309, 430, 663, 683, 720
FauI	CCCGC	1 cut(s)	989
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	3 cut(s)	620, 680, 831
FokI	GGATG	3 cut(s)	85, 233, 834
FriOI	GRGCYC	2 cut(s)	643, 812
Fsp4HI	GCNGC	3 cut(s)	620, 680, 831
FspBI	CTAG	2 cut(s)	644, 1007
GlaI	GCGC	2 cut(s)	136, 189
GluI	GCNGC	3 cut(s)	620, 680, 831
GsaI	CCCAGC	2 cut(s)	51, 702
GsuI	CTGGAG	2 cut(s)	576, 588
HaeIII	GGCC	2 cut(s)	19, 69
HapII	CCGG	1 cut(s)	70
HhaI	GCGC	2 cut(s)	137, 190
Hin1II	CATG	5 cut(s)	313, 434, 667, 687, 724
Hin6I	GCGC	2 cut(s)	135, 188
HinP1I	GCGC	2 cut(s)	135, 188
HincII	GTYRAC	2 cut(s)	171, 669
HindII	GTYRAC	2 cut(s)	171, 669
HinfI	GANTC	4 cut(s)	140, 494, 844, 919
HpaII	CCGG	1 cut(s)	70
HphI	GGTGA	2 cut(s)	211, 475
Hpy166II	GTNNAC	4 cut(s)	171, 396, 669, 825
Hpy188I	TCNGA	8 cut(s)	9, 80, 508, 540, 631, 729, 769, 817
Hpy188III	TCNNGA	4 cut(s)	431, 593, 608, 866
Hpy8I	GTNNAC	4 cut(s)	171, 396, 669, 825
HpyAV	CCTTC	2 cut(s)	636, 822
HpyCH4III	ACNGT	3 cut(s)	182, 601, 965
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	2 cut(s)	412, 448
HpyF3I	CTNAG	5 cut(s)	465, 787, 816, 834, 909
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	5 cut(s)	313, 434, 667, 687, 724
HspAI	GCGC	2 cut(s)	135, 188
Kzo9I	GATC	2 cut(s)	503, 868
LmnI	GCTCC	2 cut(s)	559, 807
Lsp1109I	GCAGC	3 cut(s)	631, 691, 817
LweI	GCATC	2 cut(s)	63, 175
MaeI	CTAG	2 cut(s)	644, 1007
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	4 cut(s)	199, 268, 481, 856
MalI	GATC	2 cut(s)	505, 870
MboI	GATC	2 cut(s)	503, 868
MboII	GAAGA	3 cut(s)	879, 897, 914
MflI	RGATCY	2 cut(s)	503, 868
MhlI	GDGCHC	3 cut(s)	643, 660, 812
MluCI	AATT	8 cut(s)	153, 208, 213, 352, 377, 509, 522, 994
MseI	TTAA	2 cut(s)	348, 420
MslI	CAYNNNNRTG	3 cut(s)	255, 429, 578
MspA1I	CMGCKG	1 cut(s)	830
MspI	CCGG	1 cut(s)	70
NcoI	CCATGG	1 cut(s)	683
NdeII	GATC	2 cut(s)	503, 868
NlaIII	CATG	5 cut(s)	313, 434, 667, 687, 724
NlaIV	GGNNCC	4 cut(s)	716, 809, 870, 934
NmuCI	GTSAC	4 cut(s)	199, 268, 481, 856
NspI	RCATGY	1 cut(s)	667
PagI	TCATGA	1 cut(s)	430
PciI	ACATGT	1 cut(s)	663
PfeI	GAWTC	4 cut(s)	140, 494, 844, 919
PkrI	GCNGC	3 cut(s)	621, 681, 832
PpuMI	RGGWCCY	1 cut(s)	715
PscI	ACATGT	1 cut(s)	663
PshAI	GACNNNNGTC	1 cut(s)	534
Psp5II	RGGWCCY	1 cut(s)	715
PspFI	CCCAGC	2 cut(s)	47, 698
PspN4I	GGNNCC	4 cut(s)	716, 809, 870, 934
PspPI	GGNCC	2 cut(s)	715, 999
PspPPI	RGGWCCY	1 cut(s)	715
PstNI	CAGNNNCTG	1 cut(s)	599
PsuI	RGATCY	2 cut(s)	503, 868
PvuII	CAGCTG	1 cut(s)	830
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
RseI	CAYNNNNRTG	3 cut(s)	255, 429, 578
SalI	GTCGAC	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	348, 420
SatI	GCNGC	3 cut(s)	620, 680, 831
Sau3AI	GATC	2 cut(s)	503, 868
Sau96I	GGNCC	2 cut(s)	715, 999
SduI	GDGCHC	3 cut(s)	643, 660, 812
SfaNI	GCATC	2 cut(s)	63, 175
SinI	GGWCC	2 cut(s)	715, 999
SmiMI	CAYNNNNRTG	3 cut(s)	255, 429, 578
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	8 cut(s)	153, 208, 213, 352, 377, 509, 522, 994
SsiI	CCGC	2 cut(s)	253, 982
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	2 cut(s)	644, 1007
StyI	CCWWGG	2 cut(s)	683, 710
TaaI	ACNGT	3 cut(s)	182, 601, 965
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	2 cut(s)	64, 170
TasI	AATT	8 cut(s)	153, 208, 213, 352, 377, 509, 522, 994
TatI	WGTACW	1 cut(s)	393
TfiI	GAWTC	4 cut(s)	140, 494, 844, 919
Tru1I	TTAA	2 cut(s)	348, 420
Tru9I	TTAA	2 cut(s)	348, 420
TscAI	CASTG	2 cut(s)	168, 968
TseFI	GTSAC	4 cut(s)	199, 268, 481, 856
TseI	GCWGC	3 cut(s)	619, 679, 830
Tsp45I	GTSAC	4 cut(s)	199, 268, 481, 856
TspDTI	ATGAA	3 cut(s)	298, 419, 447
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	2 cut(s)	168, 968
VpaK11BI	GGWCC	2 cut(s)	715, 999
XapI	RAATTY	3 cut(s)	208, 377, 509
XceI	RCATGY	1 cut(s)	667
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	2 cut(s)	644, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.