Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001298

Physical Location & Seq

Genomic Coordinates Forward (+)

13565624 .. 13566677

Gene Structure 1054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1165900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGGTTCGGTGAAGAGGAATCGACCGGATGAACCAGAGAAGAGTTTTTTCCGTTCGGAATTCGAGTGGGTTCGAGGGCCGAAGCTCGGGAGTGGCGGATTTGGGTCGGTTTATTTGGCGACCGTGAAAAAACCGAAGTTGGGTTGCGAGGGTTTCCCGACGGTGATGGCGGTGAAAACCTTCTCTGAATGGAGTGAGCAGGCGACGGAAAGTTCGTATCTTTACCTATTTCGGGACTGCCTTTATGTTATCGGAAGCTATGGGAAAAATCTGACCATTGGGGACGATGGTTACGTGAAGTATAATGTATTTTTGGAGTATGCTGATGGAGGAACAATTGGGGATTTGATCAAGAAATCCGGCGGTTCAGGGTTGTGTGAATCGGATGTGAGGAATTATACCAAAGCGATTTTGAGTGGGCTTGAGTACATTCATGAAAGTGTTCTGGTTTTGTGCCAAAAATTGGGGACTTTGGGCTGGCAAAAGACAGCTATGCAGAAGCTTACATGTCAAGGAACATCGATGTATTTGTCTCCGGAAGCTGTTTGTTGCAGAGTCCAGGAGCAGCCTTCCGATATTTGGGCATTAGGTTGCGTTGTGCTCAGGATGTTAATGGGGAGGCAGCCATGGGAAGGGAAACATGGCTCTAAATTGGATGAACCAGAGCCCCTTGTTGCTTCAAAAGTTCCCAATATTCCAGGCTGGTTATCCGATGATGCTAAAGATTTTCTAGGAAAGTGCCTAGTGAGGGACCCTTTCGAGAGATCGACAGCTGCTGAGCTCTTGAATCACCAGTTTGTGACAAAACTGGATGTGGTTGGAAAGGTTGAACCAGTGGAGGAGGTTGCTTCAGAGTCATCTTCAGAGCAATATGGAAGCTCTATACCCCTTGAAAGCTGGAATTCCGAAGAGGCAGAAGATTTTGGGCCAATTCTTCCTGTGGCACTCTTGAACCCTAGACCTGTTATTCCAAGCACGGTTTACCAAAGCCCGTCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

334

Amino Acids

36.71

Weight (kDa)

5.1

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	25 - 148	1.6e-07	Protein kinase domain
Pkinase	PF00069	167 - 267	1.5e-17	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35583 FvH4_6g36890 FvH4_7g03770 FvH4_7g03770 FvH4_7g04440 FvH4_7g04790
malus_domestica	MD09G1165900.v1.1 MD17G1161800.v1.1
prunus_persica	Prupe.3G023500_v2.0.a1 Prupe.3G023600_v2.0.a1 Prupe.3G058200_v2.0.a1 Prupe.3G058400_v2.0.a1 Prupe.3G109900_v2.0.a1 Prupe.3G111200_v2.0.a1 Prupe.3G111500_v2.0.a1 Prupe.3G152600_v2.0.a1 Prupe.3G152700_v2.0.a1 Prupe.3G158300_v2.0.a1 Prupe.5G038600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147421 RchiOBHm_Chr2g0149301 RchiOBHm_Chr2g0149321
rosa_laevigata	RLG00000008572 RLG00000008574 RLG00000008575 RLG00000008577 RLG00000008579 RLG00000008580 RLG00000020260 RLG00000020391 RLG00000020392
rosa_multiflora	Rmu_sc0000873.1_g000012 Rmu_sc0000873.1_g000015 Rmu_sc0001159.1_g000028
rosa_roxburghii	Rroxscaffold_2G00098220 Rroxscaffold_2G00098230
rosa_rugosa	Rorug02G0400000.1 Rorug02G0410500 Rorug04G0092100 Rorug04G0092200 Rorug04G0114400
rosa_samantha	Rh2AG456800 Rh2AG471200 Rh2BG469600 Rh2CG444300 Rh2CG457100 Rh2DG479100 Rh2DG492400 Rh2DG492500 Rh4BG152900 Rh4BG153500 Rh7AG365800 Rh7AG366200 Rh7AG366400
rosa_wichuraiana	Rw2G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	463
AccIII	TCCGGA	1 cut(s)	535
AciI	CCGC	3 cut(s)	96, 170, 363
AcsI	RAATTY	2 cut(s)	59, 901
AcuI	CTGAAG	2 cut(s)	834, 846
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	7 cut(s)	86, 140, 232, 463, 579, 632, 748
AflIII	ACRYGT	1 cut(s)	506
AgsI	TTSAA	5 cut(s)	681, 787, 830, 893, 952
AjnI	CCWGG	2 cut(s)	558, 697
AluBI	AGCT	9 cut(s)	85, 258, 491, 502, 542, 773, 781, 879, 897
AluI	AGCT	9 cut(s)	85, 258, 491, 502, 542, 773, 781, 879, 897
Alw21I	GWGCWC	2 cut(s)	603, 783
Alw26I	GTCTC	1 cut(s)	537
AlwNI	CAGNNNCTG	1 cut(s)	776
Ama87I	CYCGRG	1 cut(s)	86
Aor13HI	TCCGGA	1 cut(s)	535
AoxI	GGCC	2 cut(s)	77, 926
ApeKI	GCWGC	3 cut(s)	565, 622, 773
ApoI	RAATTY	2 cut(s)	59, 901
ArsI	GACNNNNNNTTYG	2 cut(s)	196, 228
Asp700I	GAANNNNTTC	2 cut(s)	179, 441
AspS9I	GGNCC	3 cut(s)	77, 751, 926
AsuHPI	GGTGA	4 cut(s)	22, 175, 184, 782
AvaI	CYCGRG	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	751
BanII	GRGCYC	2 cut(s)	669, 783
Bbv12I	GWGCWC	2 cut(s)	603, 783
BbvI	GCAGC	3 cut(s)	577, 634, 760
BccI	CCATC	3 cut(s)	160, 281, 320
BciT130I	CCWGG	2 cut(s)	560, 699
BclI	TGATCA	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	537
BfaI	CTAG	3 cut(s)	731, 743, 957
BisI	GCNGC	3 cut(s)	566, 623, 774
BlpI	GCTNAGC	1 cut(s)	777
BlsI	GCNGC	3 cut(s)	567, 624, 775
Bme1390I	CCNGG	2 cut(s)	560, 699
Bme18I	GGWCC	1 cut(s)	751
BmeT110I	CYCGRG	1 cut(s)	86
BmgT120I	GGNCC	3 cut(s)	77, 751, 926
BmiI	GGNNCC	2 cut(s)	752, 753
BmrFI	CCNGG	2 cut(s)	560, 699
BmsI	GCATC	1 cut(s)	706
Bpu10I	CCTNAGC	1 cut(s)	602
Bpu1102I	GCTNAGC	1 cut(s)	777
BpuEI	CTTGAG	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	521
BsaAI	YACGTR	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	626
BsaWI	WCCGGW	2 cut(s)	25, 535
Bsc4I	CCNNNNNNNGG	7 cut(s)	86, 140, 232, 463, 579, 632, 748
Bse1I	ACTGG	3 cut(s)	793, 813, 833
BseAI	TCCGGA	1 cut(s)	535
BseBI	CCWGG	2 cut(s)	560, 699
BseCI	ATCGAT	1 cut(s)	521
BseDI	CCNNGG	1 cut(s)	626
BseGI	GGATG	5 cut(s)	34, 391, 612, 661, 817
BseLI	CCNNNNNNNGG	7 cut(s)	86, 140, 232, 463, 579, 632, 748
BseMII	CTCAG	2 cut(s)	616, 768
BseNI	ACTGG	3 cut(s)	793, 813, 833
BseRI	GAGGAG	1 cut(s)	854
BseXI	GCAGC	3 cut(s)	577, 634, 760
Bsh1285I	CGRYCG	2 cut(s)	26, 123
BshFI	GGCC	2 cut(s)	79, 928
BshVI	ATCGAT	1 cut(s)	521
BsiEI	CGRYCG	2 cut(s)	26, 123
BsiHKAI	GWGCWC	2 cut(s)	603, 783
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	3 cut(s)	26, 360, 536
BslFI	GGGAC	4 cut(s)	248, 296, 481, 764
BslI	CCNNNNNNNGG	7 cut(s)	86, 140, 232, 463, 579, 632, 748
BsmAI	GTCTC	1 cut(s)	537
BsmFI	GGGAC	4 cut(s)	248, 296, 481, 764
BsnI	GGCC	2 cut(s)	79, 928
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	3 cut(s)	603, 669, 783
Bsp13I	TCCGGA	1 cut(s)	535
Bsp143I	GATC	2 cut(s)	348, 764
Bsp1720I	GCTNAGC	1 cut(s)	777
Bsp19I	CCATGG	1 cut(s)	626
BspACI	CCGC	3 cut(s)	96, 170, 363
BspANI	GGCC	2 cut(s)	79, 928
BspCNI	CTCAG	2 cut(s)	615, 769
BspDI	ATCGAT	1 cut(s)	521
BspEI	TCCGGA	1 cut(s)	535
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	2 cut(s)	752, 753
BsrI	ACTGG	3 cut(s)	793, 813, 833
BssECI	CCNNGG	1 cut(s)	626
BssMI	GATC	2 cut(s)	348, 764
BssT1I	CCWWGG	1 cut(s)	626
Bst2UI	CCWGG	2 cut(s)	560, 699
Bst4CI	ACNGT	3 cut(s)	124, 163, 979
Bst6I	CTCTTC	3 cut(s)	8, 35, 903
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	2 cut(s)	201, 479
BstDEI	CTNAG	3 cut(s)	602, 777, 999
BstDSI	CCRYGG	1 cut(s)	626
BstF5I	GGATG	5 cut(s)	34, 391, 612, 661, 817
BstKTI	GATC	2 cut(s)	351, 767
BstMAI	GTCTC	1 cut(s)	537
BstMBI	GATC	2 cut(s)	348, 764
BstMCI	CGRYCG	2 cut(s)	26, 123
BstNI	CCWGG	2 cut(s)	560, 699
BstNSI	RCATGY	1 cut(s)	510
BstSCI	CCNGG	2 cut(s)	558, 697
BstV1I	GCAGC	3 cut(s)	577, 634, 760
Bsu15I	ATCGAT	1 cut(s)	521
BsuRI	GGCC	2 cut(s)	79, 928
BsuTUI	ATCGAT	1 cut(s)	521
BtgI	CCRYGG	1 cut(s)	626
BtsCI	GGATG	5 cut(s)	34, 391, 612, 661, 817
BtsIMutI	CAGTG	1 cut(s)	840
Cac8I	GCNNGC	2 cut(s)	201, 479
CaiI	CAGNNNCTG	1 cut(s)	776
CciI	TCATGA	1 cut(s)	433
Cfr13I	GGNCC	3 cut(s)	77, 751, 926
ClaI	ATCGAT	1 cut(s)	521
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	4 cut(s)	434, 507, 627, 641
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	3 cut(s)	602, 777, 999
DpnI	GATC	2 cut(s)	350, 766
DpnII	GATC	2 cut(s)	348, 764
Eam1104I	CTCTTC	3 cut(s)	8, 35, 903
EarI	CTCTTC	3 cut(s)	8, 35, 903
EciI	GGCGGA	1 cut(s)	111
Ecl136II	GAGCTC	1 cut(s)	781
Eco130I	CCWWGG	1 cut(s)	626
Eco24I	GRGCYC	2 cut(s)	669, 783
Eco47I	GGWCC	1 cut(s)	751
Eco53kI	GAGCTC	1 cut(s)	781
Eco57I	CTGAAG	2 cut(s)	834, 846
Eco88I	CYCGRG	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	781
EcoO109I	RGGNCCY	1 cut(s)	751
EcoRI	GAATTC	2 cut(s)	59, 901
EcoRII	CCWGG	2 cut(s)	558, 697
EcoT14I	CCWWGG	1 cut(s)	626
EcoT38I	GRGCYC	2 cut(s)	669, 783
ErhI	CCWWGG	1 cut(s)	626
FaeI	CATG	4 cut(s)	437, 510, 630, 644
FaqI	GGGAC	4 cut(s)	248, 296, 481, 764
FatI	CATG	4 cut(s)	433, 506, 626, 640
FbaI	TGATCA	1 cut(s)	348
Fnu4HI	GCNGC	3 cut(s)	566, 623, 774
FokI	GGATG	5 cut(s)	41, 398, 619, 668, 824
FriOI	GRGCYC	2 cut(s)	669, 783
Fsp4HI	GCNGC	3 cut(s)	566, 623, 774
FspBI	CTAG	3 cut(s)	731, 743, 957
GluI	GCNGC	3 cut(s)	566, 623, 774
HaeIII	GGCC	2 cut(s)	79, 928
HapII	CCGG	3 cut(s)	26, 360, 536
Hin1II	CATG	4 cut(s)	437, 510, 630, 644
HincII	GTYRAC	1 cut(s)	996
HindII	GTYRAC	1 cut(s)	996
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	5 cut(s)	19, 380, 555, 787, 854
HpaII	CCGG	3 cut(s)	26, 360, 536
HphI	GGTGA	4 cut(s)	22, 175, 184, 782
Hpy166II	GTNNAC	2 cut(s)	982, 996
Hpy8I	GTNNAC	2 cut(s)	982, 996
Hpy99I	CGWCG	2 cut(s)	163, 208
HpyAV	CCTTC	3 cut(s)	190, 579, 626
HpyCH4III	ACNGT	3 cut(s)	124, 163, 979
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	2 cut(s)	496, 552
HpyF3I	CTNAG	3 cut(s)	602, 777, 999
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	4 cut(s)	437, 510, 630, 644
KflI	GGGWCCC	1 cut(s)	751
Kpn2I	TCCGGA	1 cut(s)	535
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	348, 764
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	3 cut(s)	577, 634, 760
LweI	GCATC	1 cut(s)	706
MaeI	CTAG	3 cut(s)	731, 743, 957
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	2 cut(s)	290, 799
MalI	GATC	2 cut(s)	350, 766
MboI	GATC	2 cut(s)	348, 764
MboII	GAAGA	6 cut(s)	25, 52, 852, 920, 926, 929
MfeI	CAATTG	1 cut(s)	336
MhlI	GDGCHC	3 cut(s)	603, 669, 783
MluCI	AATT	7 cut(s)	59, 336, 394, 461, 650, 901, 930
MlyI	GAGTC	2 cut(s)	564, 863
MmeI	TCCRAC	1 cut(s)	799
MroI	TCCGGA	1 cut(s)	535
MroXI	GAANNNNTTC	2 cut(s)	179, 441
MseI	TTAA	1 cut(s)	611
MslI	CAYNNNNRTG	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	773
MspI	CCGG	3 cut(s)	26, 360, 536
MspR9I	CCNGG	2 cut(s)	560, 699
MunI	CAATTG	1 cut(s)	336
MvaI	CCWGG	2 cut(s)	560, 699
NcoI	CCATGG	1 cut(s)	626
NdeII	GATC	2 cut(s)	348, 764
NlaIII	CATG	4 cut(s)	437, 510, 630, 644
NlaIV	GGNNCC	2 cut(s)	752, 753
NmuCI	GTSAC	1 cut(s)	799
NspI	RCATGY	1 cut(s)	510
PagI	TCATGA	1 cut(s)	433
PciI	ACATGT	1 cut(s)	506
PcsI	WCGNNNNNNNCGW	2 cut(s)	212, 291
PdmI	GAANNNNTTC	2 cut(s)	179, 441
PfeI	GAWTC	3 cut(s)	19, 380, 787
PflMI	CCANNNNNTGG	1 cut(s)	463
PfoI	TCCNGGA	1 cut(s)	558
PkrI	GCNGC	3 cut(s)	567, 624, 775
PleI	GAGTC	2 cut(s)	563, 862
PpsI	GAGTC	2 cut(s)	563, 862
Ppu21I	YACGTR	1 cut(s)	295
PpuMI	RGGWCCY	1 cut(s)	751
PscI	ACATGT	1 cut(s)	506
Psp124BI	GAGCTC	1 cut(s)	783
Psp5II	RGGWCCY	1 cut(s)	751
Psp6I	CCWGG	2 cut(s)	558, 697
PspGI	CCWGG	2 cut(s)	558, 697
PspN4I	GGNNCC	2 cut(s)	752, 753
PspPI	GGNCC	3 cut(s)	77, 751, 926
PspPPI	RGGWCCY	1 cut(s)	751
PstNI	CAGNNNCTG	1 cut(s)	776
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	1 cut(s)	438
SacI	GAGCTC	1 cut(s)	783
SaqAI	TTAA	1 cut(s)	611
SatI	GCNGC	3 cut(s)	566, 623, 774
Sau3AI	GATC	2 cut(s)	348, 764
Sau96I	GGNCC	3 cut(s)	77, 751, 926
SchI	GAGTC	2 cut(s)	564, 863
ScrFI	CCNGG	2 cut(s)	560, 699
SduI	GDGCHC	3 cut(s)	603, 669, 783
SfaNI	GCATC	1 cut(s)	706
SinI	GGWCC	1 cut(s)	751
SmiMI	CAYNNNNRTG	1 cut(s)	438
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	7 cut(s)	59, 336, 394, 461, 650, 901, 930
SsiI	CCGC	3 cut(s)	96, 170, 363
SspI	AATATT	1 cut(s)	694
SspMI	CTAG	3 cut(s)	731, 743, 957
SstI	GAGCTC	1 cut(s)	783
StyD4I	CCNGG	2 cut(s)	558, 697
StyI	CCWWGG	1 cut(s)	626
TaaI	ACNGT	3 cut(s)	124, 163, 979
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	6 cut(s)	22, 63, 73, 521, 759, 767
TasI	AATT	7 cut(s)	59, 336, 394, 461, 650, 901, 930
TatI	WGTACW	1 cut(s)	426
TfiI	GAWTC	3 cut(s)	19, 380, 787
Tru1I	TTAA	1 cut(s)	611
Tru9I	TTAA	1 cut(s)	611
TscAI	CASTG	1 cut(s)	840
TseFI	GTSAC	1 cut(s)	799
TseI	GCWGC	3 cut(s)	565, 622, 773
Tsp45I	GTSAC	1 cut(s)	799
TspDTI	ATGAA	4 cut(s)	45, 422, 450, 672
TspGWI	ACGGA	2 cut(s)	41, 221
TspRI	CASTG	1 cut(s)	840
Van91I	CCANNNNNTGG	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	751
XapI	RAATTY	2 cut(s)	59, 901
XceI	RCATGY	1 cut(s)	510
XmnI	GAANNNNTTC	2 cut(s)	179, 441
XspI	CTAG	3 cut(s)	731, 743, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.