Rorug04G0092200

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000236
Physical Location & Seq
Reverse (-)
14216890 .. 14225147
8258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0092200.1

Sequence Viewer

Length: 1680 bp
ATGCCTGATGGTACGAAGAAGTACAAAGTGGCTAGGTTCAACAAGGATGGTGGGAAAATTTGGCTAGATGGTCTAGATCCTGATAAGATTGCATGGACAGAGTTTGGAAACATTGCTTGGGATCTTGGGTACAGGGAGAAACCAATTTCATATTACTACAAGATGCCTAGGACTTACTGCAATGAGGGATGGATGCCAATTAGAAACGACGCAGATGCAGTTGAGATGGTGAAGCTTATTCCACTGAAGACAAGGCAGATTAGTGTCTTCATTACTGGTGGTGGGAGGAGGAGGAAGAAGGAGGCTAAGGAGGATGCTTTGAGGCCAGTGGACCCAAATTGGGAGAATCCTTTGAATAGATTAACAGCAGCAGAGAAAAGGAAGGTGGAAGTGGAAGCAAACATTGCTGGGAATAAGCTAAATAGGCCTGGTGTGTCAGGTTGTGGTTCAAGTGGAGTTAATGTGGTTGGTGGTGGAGATGTTAATGCAAGGCAAGAAGGGGTTAGGCAGAAGGCAAGGGCAGATGGAGTCATTAATTTGGACTCAGACTCAGACTTGGAAGCTAGTGAGGGTGGAAGGCAACAAAGTCAAGGCACCTTTACTGGTCTTAGTGACTTGGTGCCTCACTTGTTTGCTTCTAAAAGTGTGGCCCAAGCTGGAAATGACAATATTGGACAGGGGCAAAGGAATAAGGCTGAGGAGCAAGCTGAGGTGGGATGGATATCTAGCAGATTCTACAACAAGCACATTCCAAGACCTAGAGTGAAACATACCGTGCAAAAGAGGTGGGAAGGAAGGCGGCTACCTTGTGTGCTTGCTGCTGAACAACAAGAATCCGAACCAATTGAAGTTCAAGCAGTAGAACCAACCCAAACTGAACCAGGCCATCCTGAAGCAGAAGCAAGCCAATTTGAAGCACAACCAAGCCAAGTTGAAGGTGAGGCAAGTAAGGTTGAACCAACTGAAGCTGAAGCAAAGGAAGCTGAAGCTGAAGCAAGCCAATTTGAAGCACAACCAAGCCAAGTTGAAGGTGAGGCAAGTAAGGTTGAACCAACTAAAGCTGAAGCAAAGGAAGCTGAAGCTGAAGCAAGCCAATTTGAAGCACAACCAAGCCAAGTTGAAGGTGAGGCAAGTAAGGTTGAACCAACTAAAGCTGAAGCAAAGGAAGCTGAAGCTGAAGCAAGCCAATTTGAAGCACAACCAAGCCAAGTTGAAGGTGAGGCAAGTAAGGTTGAACCAACTAAAGCTGAAGCAAAGGAAGCTGAAGCTAAAGCAAAGGGAGCTGAAACTGAAGCAAGCCAATTTGAAGCACAACCAAACCAAGTTGAAGGTGAACCAAGTCAAGCTGAACCAAGCCAAGCTGAAGCAAAGGAAGCTGAATCCGGGGAGAAGAAGGGCAAGAAGCAGAACCAAGGTGAGAAGGGCAAGAAGCAGAACAAAGGAGTAGGGAAGGGGAAGACGGTTGGTGAATCAGAGAAGGGGAAGAAGGTTGGTGAATCTGAAAGGGGGAAGAAACAAAAGTTTAGTGAAGCTGAGAAAGGCAAGAAGGTTGCTGTTGATTCTAGCAGACCTGCTTCCAAGAAGAAGGGGAGACAAACTAAGGAACCAAGTCAAAATGACCACCTTCACGTGTGCATGAAGTATAACGCGAGAACTGACGACGCCACTTCTAAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

559

Amino Acids

60.97

Weight (kDa)

5.73

Isoelectric Point (pI)

45.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 19 - 91 7.2e-06 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1579
AccB1I GGYRCC 2 cut(s) 593, 619
AccII CGCG 1 cut(s) 1649
AciI CCGC 1 cut(s) 799
AclWI GGATC 2 cut(s) 71, 129
AcsI RAATTY 2 cut(s) 57, 1673
AcvI CACGTG 1 cut(s) 1630
AcyI GRCGYC 1 cut(s) 1662
AfaI GTAC 3 cut(s) 13, 23, 131
AfiI CCNNNNNNNGG 1 cut(s) 340
AflIII ACRYGT 1 cut(s) 1629
AjnI CCWGG 2 cut(s) 427, 880
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
Alw26I GTCTC 1 cut(s) 1585
AlwI GGATC 2 cut(s) 71, 129
AoxI GGCC 4 cut(s) 323, 425, 648, 883
ApeKI GCWGC 2 cut(s) 368, 818
ApoI RAATTY 2 cut(s) 57, 1673
AseI ATTAAT 1 cut(s) 534
AspA2I CCTAGG 1 cut(s) 167
AspS9I GGNCC 2 cut(s) 331, 649
AsuC2I CCSGG 1 cut(s) 1384
AsuHPI GGTGA 9 cut(s) 241, 950, 1043, 1136, 1229, 1343, 1427, 1478, 1505
AvaII GGWCC 1 cut(s) 331
AvrII CCTAGG 1 cut(s) 167
BanI GGYRCC 2 cut(s) 593, 619
BbrPI CACGTG 1 cut(s) 1630
BbsI GAAGAC 3 cut(s) 254, 259, 1463
BbvCI CCTCAGC 2 cut(s) 696, 708
BbvI GCAGC 2 cut(s) 380, 805
BccI CCATC 8 cut(s) 2, 41, 62, 183, 220, 518, 711, 894
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BciT130I CCWGG 2 cut(s) 429, 882
BcnI CCSGG 1 cut(s) 1384
BcoDI GTCTC 1 cut(s) 1585
BfaI CTAG 8 cut(s) 33, 65, 74, 168, 564, 726, 759, 1563
BfuAI ACCTGC 1 cut(s) 1579
BisI GCNGC 3 cut(s) 369, 800, 819
BlnI CCTAGG 1 cut(s) 167
BlsI GCNGC 3 cut(s) 370, 801, 820
Bme1390I CCNGG 3 cut(s) 429, 882, 1384
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 2 cut(s) 331, 649
BmiI GGNNCC 4 cut(s) 333, 595, 621, 1605
BmrFI CCNGG 3 cut(s) 429, 882, 1384
BmsI GCATC 4 cut(s) 153, 183, 205, 304
BpiI GAAGAC 3 cut(s) 254, 259, 1463
Bpu10I CCTNAGC 3 cut(s) 306, 696, 708
BpuMI CCSGG 1 cut(s) 1384
BsaAI YACGTR 1 cut(s) 1630
BsaBI GATNNNNATC 1 cut(s) 721
BsaHI GRCGYC 1 cut(s) 1662
BsaJI CCNNGG 3 cut(s) 167, 1383, 1411
BsaXI ACNNNNNCTCC 2 cut(s) 447, 477
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse1I ACTGG 3 cut(s) 280, 326, 607
Bse3DI GCAATG 3 cut(s) 111, 187, 402
Bse8I GATNNNNATC 1 cut(s) 721
BseBI CCWGG 2 cut(s) 429, 882
BseDI CCNNGG 3 cut(s) 167, 1383, 1411
BseGI GGATG 6 cut(s) 52, 194, 198, 319, 722, 886
BseJI GATNNNNATC 1 cut(s) 721
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMI GCAATG 3 cut(s) 111, 187, 402
BseMII CTCAG 5 cut(s) 558, 564, 687, 699, 1524
BseNI ACTGG 3 cut(s) 280, 326, 607
BseRI GAGGAG 3 cut(s) 301, 304, 713
BseXI GCAGC 2 cut(s) 380, 805
BseYI CCCAGC 1 cut(s) 407
Bsh1236I CGCG 1 cut(s) 1649
BshFI GGCC 4 cut(s) 325, 427, 650, 885
BshNI GGYRCC 2 cut(s) 593, 619
BsiSI CCGG 1 cut(s) 1383
BslI CCNNNNNNNGG 1 cut(s) 340
BsmAI GTCTC 1 cut(s) 1585
BsnI GGCC 4 cut(s) 325, 427, 650, 885
Bsp143I GATC 2 cut(s) 76, 121
BspACI CCGC 1 cut(s) 799
BspANI GGCC 4 cut(s) 325, 427, 650, 885
BspCNI CTCAG 5 cut(s) 557, 563, 688, 700, 1525
BspFNI CGCG 1 cut(s) 1649
BspLI GGNNCC 4 cut(s) 333, 595, 621, 1605
BspMI ACCTGC 1 cut(s) 1579
BspPI GGATC 2 cut(s) 71, 129
BspT107I GGYRCC 2 cut(s) 593, 619
BsrDI GCAATG 3 cut(s) 111, 187, 402
BsrI ACTGG 3 cut(s) 280, 326, 607
BssECI CCNNGG 3 cut(s) 167, 1383, 1411
BssMI GATC 2 cut(s) 76, 121
BssNI GRCGYC 1 cut(s) 1662
BssT1I CCWWGG 2 cut(s) 167, 1411
Bst2UI CCWGG 2 cut(s) 429, 882
Bst4CI ACNGT 2 cut(s) 775, 1462
BstACI GRCGYC 1 cut(s) 1662
BstAPI GCANNNNNTGC 1 cut(s) 404
BstBAI YACGTR 1 cut(s) 1630
BstC8I GCNNGC 7 cut(s) 705, 816, 904, 997, 1090, 1183, 1297
BstDEI CTNAG 8 cut(s) 306, 544, 550, 608, 696, 708, 1533, 1599
BstF5I GGATG 6 cut(s) 52, 194, 198, 319, 722, 886
BstFNI CGCG 1 cut(s) 1649
BstKTI GATC 2 cut(s) 79, 124
BstMAI GTCTC 1 cut(s) 1585
BstMBI GATC 2 cut(s) 76, 121
BstMWI GCNNNNNNNGC 8 cut(s) 404, 424, 980, 1073, 1166, 1259, 1280, 1373
BstNI CCWGG 2 cut(s) 429, 882
BstSCI CCNGG 3 cut(s) 427, 880, 1382
BstUI CGCG 1 cut(s) 1649
BstV1I GCAGC 2 cut(s) 380, 805
BstV2I GAAGAC 3 cut(s) 254, 259, 1463
BstX2I RGATCY 2 cut(s) 76, 121
BstYI RGATCY 2 cut(s) 76, 121
BsuRI GGCC 4 cut(s) 325, 427, 650, 885
BtsCI GGATG 6 cut(s) 52, 194, 198, 319, 722, 886
BtsIMutI CAGTG 2 cut(s) 242, 333
BveI ACCTGC 1 cut(s) 1579
Cac8I GCNNGC 7 cut(s) 705, 816, 904, 997, 1090, 1183, 1297
Cfr13I GGNCC 2 cut(s) 331, 649
CseI GACGC 2 cut(s) 218, 1670
Csp6I GTAC 3 cut(s) 12, 22, 130
CspCI CAANNNNNGTGG 4 cut(s) 31, 66, 767, 802
CviAII CATG 2 cut(s) 93, 1636
CviQI GTAC 3 cut(s) 12, 22, 130
DdeI CTNAG 8 cut(s) 306, 544, 550, 608, 696, 708, 1533, 1599
DpnI GATC 2 cut(s) 78, 123
DpnII GATC 2 cut(s) 76, 121
Eco130I CCWWGG 2 cut(s) 167, 1411
Eco147I AGGCCT 1 cut(s) 427
Eco32I GATATC 1 cut(s) 723
Eco47I GGWCC 1 cut(s) 331
Eco72I CACGTG 1 cut(s) 1630
EcoRII CCWGG 2 cut(s) 427, 880
EcoRV GATATC 1 cut(s) 723
EcoT14I CCWWGG 2 cut(s) 167, 1411
ErhI CCWWGG 2 cut(s) 167, 1411
FaeI CATG 2 cut(s) 96, 1639
FaiI YATR 5 cut(s) 94, 151, 771, 1637, 1644
FatI CATG 2 cut(s) 92, 1635
Fnu4HI GCNGC 3 cut(s) 369, 800, 819
FokI GGATG 6 cut(s) 59, 201, 205, 326, 729, 873
Fsp4HI GCNGC 3 cut(s) 369, 800, 819
FspBI CTAG 8 cut(s) 33, 65, 74, 168, 564, 726, 759, 1563
GluI GCNGC 3 cut(s) 369, 800, 819
GsaI CCCAGC 1 cut(s) 411
HaeIII GGCC 4 cut(s) 325, 427, 650, 885
HapII CCGG 1 cut(s) 1383
HgaI GACGC 2 cut(s) 218, 1670
Hin1I GRCGYC 1 cut(s) 1662
Hin1II CATG 2 cut(s) 96, 1639
HindIII AAGCTT 1 cut(s) 233
HpaII CCGG 1 cut(s) 1383
HphI GGTGA 9 cut(s) 241, 950, 1043, 1136, 1229, 1343, 1427, 1478, 1505
Hpy166II GTNNAC 2 cut(s) 331, 1334
Hpy188I TCNGA 5 cut(s) 547, 553, 838, 1474, 1501
Hpy188III TCNNGA 3 cut(s) 74, 80, 890
Hpy8I GTNNAC 2 cut(s) 331, 1334
Hpy99I CGWCG 2 cut(s) 212, 1664
HpyCH4III ACNGT 2 cut(s) 775, 1462
HpyCH4IV ACGT 1 cut(s) 1629
HpyCH4V TGCA 6 cut(s) 92, 180, 218, 488, 778, 1635
HpyF10VI GCNNNNNNNGC 8 cut(s) 404, 424, 980, 1073, 1166, 1259, 1280, 1373
HpyF3I CTNAG 8 cut(s) 306, 544, 550, 608, 696, 708, 1533, 1599
HpySE526I ACGT 1 cut(s) 1629
Hsp92I GRCGYC 1 cut(s) 1662
Hsp92II CATG 2 cut(s) 96, 1639
Kzo9I GATC 2 cut(s) 76, 121
LmnI GCTCC 2 cut(s) 700, 1280
Lsp1109I GCAGC 2 cut(s) 380, 805
LweI GCATC 4 cut(s) 153, 183, 205, 304
MaeI CTAG 8 cut(s) 33, 65, 74, 168, 564, 726, 759, 1563
MaeII ACGT 1 cut(s) 1629
MaeIII GTNAC 1 cut(s) 611
MalI GATC 2 cut(s) 78, 123
MboI GATC 2 cut(s) 76, 121
MboII GAAGA 9 cut(s) 28, 259, 259, 307, 1402, 1468, 1495, 1522, 1594
MfeI CAATTG 1 cut(s) 843
MflI RGATCY 2 cut(s) 76, 121
MlyI GAGTC 3 cut(s) 536, 537, 542
MseI TTAA 4 cut(s) 362, 459, 483, 534
MspI CCGG 1 cut(s) 1383
MspR9I CCNGG 3 cut(s) 429, 882, 1384
MunI CAATTG 1 cut(s) 843
MvaI CCWGG 2 cut(s) 429, 882
MvnI CGCG 1 cut(s) 1649
MwoI GCNNNNNNNGC 8 cut(s) 404, 424, 980, 1073, 1166, 1259, 1280, 1373
NciI CCSGG 1 cut(s) 1384
NdeII GATC 2 cut(s) 76, 121
NlaIII CATG 2 cut(s) 96, 1639
NlaIV GGNNCC 4 cut(s) 333, 595, 621, 1605
NmuCI GTSAC 1 cut(s) 611
PceI AGGCCT 1 cut(s) 427
PfeI GAWTC 7 cut(s) 346, 732, 833, 1379, 1469, 1496, 1559
PkrI GCNGC 3 cut(s) 370, 801, 820
PleI GAGTC 3 cut(s) 536, 536, 542
PmaCI CACGTG 1 cut(s) 1630
PmlI CACGTG 1 cut(s) 1630
PpsI GAGTC 3 cut(s) 536, 536, 542
Ppu21I YACGTR 1 cut(s) 1630
PshBI ATTAAT 1 cut(s) 534
Psp6I CCWGG 2 cut(s) 427, 880
PspCI CACGTG 1 cut(s) 1630
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 2 cut(s) 427, 880
PspN4I GGNNCC 4 cut(s) 333, 595, 621, 1605
PspPI GGNCC 2 cut(s) 331, 649
PsuI RGATCY 2 cut(s) 76, 121
RsaI GTAC 3 cut(s) 13, 23, 131
RsaNI GTAC 3 cut(s) 12, 22, 130
SaqAI TTAA 4 cut(s) 362, 459, 483, 534
SatI GCNGC 3 cut(s) 369, 800, 819
Sau3AI GATC 2 cut(s) 76, 121
Sau96I GGNCC 2 cut(s) 331, 649
SchI GAGTC 3 cut(s) 536, 537, 542
ScrFI CCNGG 3 cut(s) 429, 882, 1384
SfaNI GCATC 4 cut(s) 153, 183, 205, 304
SinI GGWCC 1 cut(s) 331
SseBI AGGCCT 1 cut(s) 427
SsiI CCGC 1 cut(s) 799
SspI AATATT 1 cut(s) 670
SspMI CTAG 8 cut(s) 33, 65, 74, 168, 564, 726, 759, 1563
StuI AGGCCT 1 cut(s) 427
StyD4I CCNGG 3 cut(s) 427, 880, 1382
StyI CCWWGG 2 cut(s) 167, 1411
TaaI ACNGT 2 cut(s) 775, 1462
TaiI ACGT 1 cut(s) 1632
TatI WGTACW 1 cut(s) 21
TauI GCSGC 1 cut(s) 802
TfiI GAWTC 7 cut(s) 346, 732, 833, 1379, 1469, 1496, 1559
Tru1I TTAA 4 cut(s) 362, 459, 483, 534
Tru9I TTAA 4 cut(s) 362, 459, 483, 534
TscAI CASTG 2 cut(s) 249, 333
TseFI GTSAC 1 cut(s) 611
TseI GCWGC 2 cut(s) 368, 818
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 3 cut(s) 138, 259, 1652
TspRI CASTG 2 cut(s) 249, 333
VpaK11BI GGWCC 1 cut(s) 331
VspI ATTAAT 1 cut(s) 534
XapI RAATTY 2 cut(s) 57, 1673
XbaI TCTAGA 1 cut(s) 73
XmaJI CCTAGG 1 cut(s) 167
XspI CTAG 8 cut(s) 33, 65, 74, 168, 564, 726, 759, 1563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.