Rh5CG009800

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000236
Physical Location & Seq
Reverse (-)
618546 .. 619210
665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG009800.1

Sequence Viewer

Length: 426 bp
ATGATGGGATGGCTGGGTACAGATCACTTACATGAAATAGATATAGGTCTAGAAAAGCCTGTCACCCTCAAACAATTAAAAGATGCTACTCGGAATTTTAGCAAGAGGAACGAGATTGGTCAAGGGGGTTTTGGGACCGTTTACAAGGCTGAAGTGCAAGGGAAAATTGTAGCTGTGAAGAAACTTTCCTCTCATTCAGAGGAAAGGATCAATCAGTTGAAAAATGAGTTTTATACCTTAAAGTCAATGAGTCAAGAGAACCTTGTTCAGTTGTTGGACGTTTACAACACAAAAGGCCTGCATTTGCTCATCTATGAATATATGCAAAACAACTCCCTTGCACACGCCTTATTTGGTTATTTTCTTTCTATTGGGCCCCTTTCTTTTTGTTATATGTTTTTCTGTTCTAACATTGTAACTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

141

Amino Acids

16.1

Weight (kDa)

7.78

Isoelectric Point (pI)

29.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 34 - 117 5.9e-15 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 36 - 117 3.6e-13 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 215
AcsI RAATTY 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 1 cut(s) 19
AgsI TTSAA 1 cut(s) 220
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
AlwI GGATC 1 cut(s) 215
AoxI GGCC 2 cut(s) 295, 374
ApaI GGGCCC 1 cut(s) 378
ApoI RAATTY 1 cut(s) 94
AspS9I GGNCC 3 cut(s) 135, 374, 375
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 1 cut(s) 135
BaeGI GKGCMC 1 cut(s) 378
BanII GRGCYC 1 cut(s) 378
BccI CCATC 1 cut(s) 3
BfaI CTAG 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 3 cut(s) 135, 374, 375
BmiI GGNNCC 3 cut(s) 136, 376, 377
BmsI GCATC 1 cut(s) 73
BseGI GGATG 1 cut(s) 14
BseSI GKGCMC 1 cut(s) 378
BseYI CCCAGC 1 cut(s) 13
BshFI GGCC 2 cut(s) 297, 376
BslFI GGGAC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 148
BsnI GGCC 2 cut(s) 297, 376
Bsp120I GGGCCC 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 378
Bsp143I GATC 2 cut(s) 22, 207
BspANI GGCC 2 cut(s) 297, 376
BspLI GGNNCC 3 cut(s) 136, 376, 377
BspPI GGATC 1 cut(s) 215
BssMI GATC 2 cut(s) 22, 207
Bst4CI ACNGT 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 299
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 2 cut(s) 25, 210
BstMBI GATC 2 cut(s) 22, 207
BstSLI GKGCMC 1 cut(s) 378
BsuRI GGCC 2 cut(s) 297, 376
BtsCI GGATG 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 299
Cfr13I GGNCC 3 cut(s) 135, 374, 375
Csp6I GTAC 1 cut(s) 18
CviAII CATG 1 cut(s) 32
CviJI RGCY 6 cut(s) 13, 58, 149, 173, 297, 376
CviKI_1 RGCY 6 cut(s) 13, 58, 149, 173, 297, 376
CviQI GTAC 1 cut(s) 18
DpnI GATC 2 cut(s) 24, 209
DpnII GATC 2 cut(s) 22, 207
Eco147I AGGCCT 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 171
EcoO109I RGGNCCY 1 cut(s) 375
EcoT38I GRGCYC 1 cut(s) 378
FaeI CATG 1 cut(s) 35
FaiI YATR 8 cut(s) 33, 44, 234, 315, 321, 323, 393, 395
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 1 cut(s) 148
FatI CATG 1 cut(s) 31
FokI GGATG 1 cut(s) 21
FriOI GRGCYC 1 cut(s) 378
FspBI CTAG 1 cut(s) 50
GsaI CCCAGC 1 cut(s) 17
HaeIII GGCC 2 cut(s) 297, 376
Hin1II CATG 1 cut(s) 35
HinfI GANTC 1 cut(s) 250
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 2 cut(s) 142, 283
Hpy188I TCNGA 2 cut(s) 93, 199
Hpy188III TCNNGA 2 cut(s) 50, 254
Hpy8I GTNNAC 2 cut(s) 142, 283
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 4 cut(s) 157, 301, 325, 341
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 1 cut(s) 35
Kzo9I GATC 2 cut(s) 22, 207
LpnPI CCDG 2 cut(s) 72, 311
LweI GCATC 1 cut(s) 73
MaeI CTAG 1 cut(s) 50
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 2 cut(s) 61, 415
MalI GATC 2 cut(s) 24, 209
MboI GATC 2 cut(s) 22, 207
MboII GAAGA 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 378
MluCI AATT 3 cut(s) 74, 94, 165
MlyI GAGTC 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 4 cut(s) 77, 99, 193, 199
MseI TTAA 2 cut(s) 77, 239
MslI CAYNNNNRTG 1 cut(s) 30
NdeII GATC 2 cut(s) 22, 207
NlaIII CATG 1 cut(s) 35
NlaIV GGNNCC 3 cut(s) 136, 376, 377
NmuCI GTSAC 1 cut(s) 61
PceI AGGCCT 1 cut(s) 297
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
PspFI CCCAGC 1 cut(s) 13
PspN4I GGNNCC 3 cut(s) 136, 376, 377
PspOMI GGGCCC 1 cut(s) 374
PspPI GGNCC 3 cut(s) 135, 374, 375
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
RseI CAYNNNNRTG 1 cut(s) 30
SaqAI TTAA 2 cut(s) 77, 239
Sau3AI GATC 2 cut(s) 22, 207
Sau96I GGNCC 3 cut(s) 135, 374, 375
SchI GAGTC 1 cut(s) 259
SduI GDGCHC 1 cut(s) 378
SetI ASST 5 cut(s) 49, 175, 239, 264, 282
SfaNI GCATC 1 cut(s) 73
SinI GGWCC 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 30
Sse9I AATT 3 cut(s) 74, 94, 165
SseBI AGGCCT 1 cut(s) 297
SspMI CTAG 1 cut(s) 50
StuI AGGCCT 1 cut(s) 297
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 282
TasI AATT 3 cut(s) 74, 94, 165
Tru1I TTAA 2 cut(s) 77, 239
Tru9I TTAA 2 cut(s) 77, 239
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 48, 330
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 1 cut(s) 94
XbaI TCTAGA 1 cut(s) 49
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.