Rroxscaffold_1G00050170

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000236
Physical Location & Seq
Forward (+)
70606171 .. 70620451
14281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00050170.1

Sequence Viewer

Length: 468 bp
ATGGCTCTACGCACAAAGCTAAACAAGTGTTCAAAGCCCCGTTGTTACCACGATATCTCTATCCTTGCACCAATCATTCGGAAACGAGCGCAAGTGGTCAAAATTACCTCAAACCTTCCGGTTTGGCCGAAAACGCAGAAAACGGTAATGAGCTCCGACGAGCTTGAAAACGTTCACCTCGGGTCCGGTGCTTCTTGGAGCTTGATCAACAACTCAAGGGGAGTTCAACAAGCCAAAGAACTCGAAGACCTCAGCTTTAACAAGCTTACTGGGAAAATTCCTAGCCCCTTTGTTAGTAAAGATGATTTGCAATACATATTCTTAACTGGAAACTTGCTGAATGGACCAGTGCCCGAATCGCTGAAAGGAACCAGCATCATTCTCTCCTGTTCTGCCCTCGGTTGTAGTTGTTTGCTGAGCAGCGATGTACACCTTGAAGGTTTTAGGCGTAAACGCTTGTCAAGTTAA

Protein Analysis

155

Amino Acids

17.08

Weight (kDa)

9.57

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 171
AcoI YGGCCR 1 cut(s) 125
AcsI RAATTY 1 cut(s) 276
AfaI GTAC 1 cut(s) 429
AgsI TTSAA 4 cut(s) 33, 167, 227, 437
AluBI AGCT 6 cut(s) 19, 153, 163, 201, 255, 265
AluI AGCT 6 cut(s) 19, 153, 163, 201, 255, 265
Alw21I GWGCWC 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 420
ApoI RAATTY 1 cut(s) 276
Asp700I GAANNNNTTC 1 cut(s) 171
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 2 cut(s) 183, 344
AsuHPI GGTGA 1 cut(s) 167
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 2 cut(s) 183, 344
BaeGI GKGCMC 1 cut(s) 354
BanII GRGCYC 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 155
BbvCI CCTCAGC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 432
BclI TGATCA 1 cut(s) 204
BfaI CTAG 1 cut(s) 282
BisI GCNGC 1 cut(s) 421
BlpI GCTNAGC 1 cut(s) 416
BlsI GCNGC 1 cut(s) 422
Bme18I GGWCC 2 cut(s) 183, 344
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 2 cut(s) 183, 344
BmiI GGNNCC 2 cut(s) 184, 370
BmrI ACTGGG 1 cut(s) 279
BmsI GCATC 1 cut(s) 384
BmuI ACTGGG 1 cut(s) 279
BpiI GAAGAC 1 cut(s) 252
Bpu10I CCTNAGC 1 cut(s) 251
Bpu1102I GCTNAGC 1 cut(s) 416
BpuEI CTTGAG 1 cut(s) 199
BsaJI CCNNGG 2 cut(s) 178, 397
BsaWI WCCGGW 2 cut(s) 118, 185
Bse1I ACTGG 3 cut(s) 274, 331, 347
BseDI CCNNGG 2 cut(s) 178, 397
BseMII CTCAG 2 cut(s) 265, 407
BseNI ACTGG 3 cut(s) 274, 331, 347
BseSI GKGCMC 1 cut(s) 354
BseXI GCAGC 1 cut(s) 432
BshFI GGCC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 155
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 2 cut(s) 119, 186
BsnI GGCC 1 cut(s) 127
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 155, 354
Bsp1407I TGTACA 1 cut(s) 427
Bsp143I GATC 1 cut(s) 204
Bsp1720I GCTNAGC 1 cut(s) 416
BspANI GGCC 1 cut(s) 127
BspCNI CTCAG 2 cut(s) 264, 408
BspLI GGNNCC 2 cut(s) 184, 370
BsrGI TGTACA 1 cut(s) 427
BsrI ACTGG 3 cut(s) 274, 331, 347
BssECI CCNNGG 2 cut(s) 178, 397
BssMI GATC 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 145
BstAUI TGTACA 1 cut(s) 427
BstDEI CTNAG 2 cut(s) 251, 416
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 1 cut(s) 207
BstMBI GATC 1 cut(s) 204
BstMWI GCNNNNNNNGC 2 cut(s) 133, 358
BstSLI GKGCMC 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 432
BstV2I GAAGAC 1 cut(s) 252
BsuRI GGCC 1 cut(s) 127
BtgZI GCGATG 1 cut(s) 438
BtsIMutI CAGTG 1 cut(s) 354
CfoI GCGC 1 cut(s) 91
Cfr13I GGNCC 2 cut(s) 183, 344
Csp6I GTAC 1 cut(s) 428
CviQI GTAC 1 cut(s) 428
DdeI CTNAG 2 cut(s) 251, 416
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
EaeI YGGCCR 1 cut(s) 125
Ecl136II GAGCTC 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 155
Eco32I GATATC 1 cut(s) 55
Eco47I GGWCC 2 cut(s) 183, 344
Eco53kI GAGCTC 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 153
EcoRV GATATC 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 155
FaiI YATR 1 cut(s) 317
FbaI TGATCA 1 cut(s) 204
Fnu4HI GCNGC 1 cut(s) 421
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 421
FspBI CTAG 1 cut(s) 282
GlaI GCGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 421
HaeIII GGCC 1 cut(s) 127
HapII CCGG 2 cut(s) 119, 186
HhaI GCGC 1 cut(s) 91
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 1 cut(s) 356
HpaII CCGG 2 cut(s) 119, 186
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 3 cut(s) 175, 430, 452
Hpy188I TCNGA 2 cut(s) 81, 157
Hpy8I GTNNAC 3 cut(s) 175, 430, 452
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 125, 431
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 68, 310
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 358
HpyF3I CTNAG 2 cut(s) 251, 416
HpySE526I ACGT 1 cut(s) 171
HspAI GCGC 1 cut(s) 89
Ksp22I TGATCA 1 cut(s) 204
Kzo9I GATC 1 cut(s) 204
LmnI GCTCC 2 cut(s) 158, 198
LpnPI CCDG 7 cut(s) 132, 199, 255, 312, 360, 385, 400
Lsp1109I GCAGC 1 cut(s) 432
LweI GCATC 1 cut(s) 384
MaeI CTAG 1 cut(s) 282
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 44
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 1 cut(s) 257
MhlI GDGCHC 2 cut(s) 155, 354
MluCI AATT 2 cut(s) 102, 276
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 4 cut(s) 118, 188, 260, 407
MroXI GAANNNNTTC 1 cut(s) 171
MseI TTAA 3 cut(s) 258, 323, 466
MspI CCGG 2 cut(s) 119, 186
MwoI GCNNNNNNNGC 2 cut(s) 133, 358
NdeII GATC 1 cut(s) 204
NlaIV GGNNCC 2 cut(s) 184, 370
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 1 cut(s) 422
Psp124BI GAGCTC 1 cut(s) 155
Psp1406I AACGTT 1 cut(s) 171
PspN4I GGNNCC 2 cut(s) 184, 370
PspPI GGNCC 2 cut(s) 183, 344
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
SacI GAGCTC 1 cut(s) 155
SaqAI TTAA 3 cut(s) 258, 323, 466
SatI GCNGC 1 cut(s) 421
Sau3AI GATC 1 cut(s) 204
Sau96I GGNCC 2 cut(s) 183, 344
SduI GDGCHC 2 cut(s) 155, 354
SfaNI GCATC 1 cut(s) 384
SinI GGWCC 2 cut(s) 183, 344
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
Sse9I AATT 2 cut(s) 102, 276
SspMI CTAG 1 cut(s) 282
SstI GAGCTC 1 cut(s) 155
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 243
TasI AATT 2 cut(s) 102, 276
TatI WGTACW 1 cut(s) 427
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 3 cut(s) 258, 323, 466
Tru9I TTAA 3 cut(s) 258, 323, 466
TscAI CASTG 1 cut(s) 354
TseI GCWGC 1 cut(s) 420
TspRI CASTG 1 cut(s) 354
VpaK11BI GGWCC 2 cut(s) 183, 344
XapI RAATTY 1 cut(s) 276
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.