Rh5BG010700

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
668191 .. 669770
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG010700.1

Sequence Viewer

Length: 1128 bp
ATGATGTTTCCTGCAGACCATTCTTTGTTTATTAACTGTGGTGGTGGAGAAACAACTGTTAATGGAGTTACTTATGAGCAAGATAATGCCACAGCACCCTTCTTCACAAGTCCAAATAAAAACTGGGCTTATAGCTTTGGAGGTTCTTGGGAAGGAAATGCCAGTTCTAGTGATTACACGAAGAACATGACATGTGGAGTTTCTGTTGCTGAGGCACCTTTGTATGATAGAGCTCGTCTTTCCCCTGTATCTCTCAAGTACTATGCTTTCTGTCTACGTGAAGGCAAATACAATGTGACGCTCAAGTTTGCTGAAATTGTATACACTAAAGATACAGACTATACCAGTTTGAGGAAGCGTGCATTCGACATTTATATTCAGGATGACAAAATTAAAGTGCTAAATGATTTCCACATTAGAGAGCAGGCAGGAGGTCCAGATAAACCAATTACCAAAAGTTTTACAGCTGTGGTAAATAAATATAATGGGATGGCAAGGGGTCTATTGAAGATCCACATGTACTGGGATGGCAAGGGGTCTACTGACTTGGGTTACGGAGCTGCTGCTTTTAATGGACCTCTAATATCTGCTATTTCCGTGTCTCCTGAATTCAAAATTCATGATGAGAAACTACGTCCCTTACATATTGCACTGATCGGGATAGGTTCAACCATTATTGCTGTGCTGCTTTTATTGGCTTTTGCCTGGATGGGCTGGTTCAGAAGCAGAAACTCACCCAAAATAAAAGTAGGTGAAGAAAAAAAAGGGGAAGGGACTCAAGACAAGCATGTCACCCTCAAAGAATTAATAGATGCTACTGGAAAGTTTAGCGACAAAAAGATAATTGGCAGTGGCAGTCTTGGGAAAGTTTATGAGGCACAACTACTAGGTCTTATTAAAACTACTGTAGCTATGAAGAGACTTTCCTCTCATTTTAAAGAAAATATCCAAAAATTGAAAAAGGAAATCAAATGGTTATATGAATTGGAGCATGAAAATCTCATTAAATTGTTCGATTATCATATTGAGAAAGACCTCCAACTTCTTGTTTATGAATACATGGAAAACAGATCCCTGGAAGATGCCTTGACCGGTAATGTATTTACTTCTTGTTCTAGCTTCCAGTAG

Protein Analysis

375

Amino Acids

42.14

Weight (kDa)

8.58

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 8 - 198 2.6e-25 Malectin domain
Pkinase PF00069 277 - 367 4.9e-12 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 279 - 364 2e-11 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 788
AccB1I GGYRCC 1 cut(s) 214
AccI GTMKAC 3 cut(s) 274, 321, 539
AclWI GGATC 2 cut(s) 505, 1065
AcsI RAATTY 2 cut(s) 608, 615
AfaI GTAC 2 cut(s) 260, 521
AfiI CCNNNNNNNGG 1 cut(s) 351
AflIII ACRYGT 2 cut(s) 191, 516
AgeI ACCGGT 1 cut(s) 1091
AgsI TTSAA 4 cut(s) 508, 613, 669, 958
AjnI CCWGG 2 cut(s) 704, 1074
AluBI AGCT 6 cut(s) 135, 233, 467, 560, 911, 1119
AluI AGCT 6 cut(s) 135, 233, 467, 560, 911, 1119
Alw21I GWGCWC 1 cut(s) 235
Alw26I GTCTC 2 cut(s) 606, 913
AlwI GGATC 2 cut(s) 505, 1065
ApeKI GCWGC 3 cut(s) 560, 563, 685
ApoI RAATTY 2 cut(s) 608, 615
AseI ATTAAT 1 cut(s) 806
AsiGI ACCGGT 1 cut(s) 1091
AspS9I GGNCC 2 cut(s) 434, 575
AsuHPI GGTGA 3 cut(s) 726, 764, 784
AvaII GGWCC 2 cut(s) 434, 575
BanI GGYRCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 235
BbvCI CCTCAGC 1 cut(s) 210
BbvI GCAGC 3 cut(s) 547, 550, 672
BccI CCATC 3 cut(s) 484, 521, 703
BciT130I CCWGG 2 cut(s) 706, 1076
BcoDI GTCTC 2 cut(s) 606, 913
BfaI CTAG 3 cut(s) 168, 887, 1116
BfmI CTRYAG 2 cut(s) 12, 906
BisI GCNGC 3 cut(s) 561, 564, 686
BlsI GCNGC 3 cut(s) 562, 565, 687
BmcAI AGTACT 1 cut(s) 260
Bme1390I CCNGG 2 cut(s) 706, 1076
Bme18I GGWCC 2 cut(s) 434, 575
BmgT120I GGNCC 2 cut(s) 434, 575
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 2 cut(s) 706, 1076
BmrI ACTGGG 2 cut(s) 133, 532
BmsI GCATC 2 cut(s) 802, 1072
BmuI ACTGGG 2 cut(s) 133, 532
Bpu10I CCTNAGC 1 cut(s) 210
BpuEI CTTGAG 3 cut(s) 239, 287, 762
BsaAI YACGTR 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 1074
BsaWI WCCGGW 1 cut(s) 1091
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse118I RCCGGY 1 cut(s) 1091
Bse1I ACTGG 6 cut(s) 128, 162, 345, 527, 823, 1123
BseBI CCWGG 2 cut(s) 706, 1076
BseDI CCNNGG 1 cut(s) 1074
BseGI GGATG 4 cut(s) 388, 495, 532, 714
BseLI CCNNNNNNNGG 1 cut(s) 351
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 6 cut(s) 128, 162, 345, 527, 823, 1123
BseXI GCAGC 3 cut(s) 547, 550, 672
BshNI GGYRCC 1 cut(s) 214
BshTI ACCGGT 1 cut(s) 1091
BsiHKAI GWGCWC 1 cut(s) 235
BsiSI CCGG 1 cut(s) 1092
BslFI GGGAC 2 cut(s) 621, 787
BslI CCNNNNNNNGG 1 cut(s) 351
BsmAI GTCTC 2 cut(s) 606, 913
BsmFI GGGAC 2 cut(s) 621, 787
BsmI GAATGC 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 235
Bsp143I GATC 3 cut(s) 510, 654, 1070
BspCNI CTCAG 1 cut(s) 202
BspHI TCATGA 1 cut(s) 619
BspLI GGNNCC 1 cut(s) 216
BspMAI CTGCAG 1 cut(s) 16
BspPI GGATC 2 cut(s) 505, 1065
BspT107I GGYRCC 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 1091
BsrI ACTGG 6 cut(s) 128, 162, 345, 527, 823, 1123
BssAI RCCGGY 1 cut(s) 1091
BssECI CCNNGG 1 cut(s) 1074
BssMI GATC 3 cut(s) 510, 654, 1070
BssNAI GTATAC 1 cut(s) 322
Bst1107I GTATAC 1 cut(s) 322
Bst2UI CCWGG 2 cut(s) 706, 1076
Bst4CI ACNGT 3 cut(s) 38, 58, 907
Bst6I CTCTTC 1 cut(s) 911
BstBAI YACGTR 1 cut(s) 278
BstC8I GCNNGC 2 cut(s) 360, 426
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 4 cut(s) 388, 495, 532, 714
BstKTI GATC 3 cut(s) 513, 657, 1073
BstMAI GTCTC 2 cut(s) 606, 913
BstMBI GATC 3 cut(s) 510, 654, 1070
BstNI CCWGG 2 cut(s) 706, 1076
BstNSI RCATGY 3 cut(s) 195, 520, 791
BstSCI CCNGG 2 cut(s) 704, 1074
BstSFI CTRYAG 2 cut(s) 12, 906
BstV1I GCAGC 3 cut(s) 547, 550, 672
BstX2I RGATCY 2 cut(s) 510, 1070
BstYI RGATCY 2 cut(s) 510, 1070
BstZ17I GTATAC 1 cut(s) 322
BtsCI GGATG 4 cut(s) 388, 495, 532, 714
BtsI GCAGTG 1 cut(s) 856
BtsIMutI CAGTG 2 cut(s) 650, 856
Cac8I GCNNGC 2 cut(s) 360, 426
CciI TCATGA 1 cut(s) 619
Cfr10I RCCGGY 1 cut(s) 1091
Cfr13I GGNCC 2 cut(s) 434, 575
CseI GACGC 1 cut(s) 307
Csp6I GTAC 2 cut(s) 259, 520
CspAI ACCGGT 1 cut(s) 1091
CviAII CATG 7 cut(s) 187, 192, 517, 620, 788, 992, 1060
CviJI RGCY 9 cut(s) 128, 135, 233, 467, 560, 698, 714, 911, 1119
CviKI_1 RGCY 9 cut(s) 128, 135, 233, 467, 560, 698, 714, 911, 1119
CviQI GTAC 2 cut(s) 259, 520
DdeI CTNAG 1 cut(s) 210
DpnI GATC 3 cut(s) 512, 656, 1072
DpnII GATC 3 cut(s) 510, 654, 1070
DraI TTTAAA 1 cut(s) 937
DrdI GACNNNNNNGTC 1 cut(s) 788
DseDI GACNNNNNNGTC 1 cut(s) 788
Eam1104I CTCTTC 1 cut(s) 911
EarI CTCTTC 1 cut(s) 911
Ecl136II GAGCTC 1 cut(s) 233
Eco24I GRGCYC 1 cut(s) 235
Eco47I GGWCC 2 cut(s) 434, 575
Eco53kI GAGCTC 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 608
EcoRII CCWGG 2 cut(s) 704, 1074
EcoT38I GRGCYC 1 cut(s) 235
FaeI CATG 7 cut(s) 190, 195, 520, 623, 791, 995, 1063
FaqI GGGAC 2 cut(s) 621, 787
FatI CATG 7 cut(s) 186, 191, 516, 619, 787, 991, 1059
FblI GTMKAC 3 cut(s) 274, 321, 539
Fnu4HI GCNGC 3 cut(s) 561, 564, 686
FokI GGATG 4 cut(s) 395, 502, 539, 721
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 3 cut(s) 561, 564, 686
FspBI CTAG 3 cut(s) 168, 887, 1116
GluI GCNGC 3 cut(s) 561, 564, 686
HapII CCGG 1 cut(s) 1092
HgaI GACGC 1 cut(s) 307
Hin1II CATG 7 cut(s) 190, 195, 520, 623, 791, 995, 1063
HinfI GANTC 1 cut(s) 775
HpaII CCGG 1 cut(s) 1092
HphI GGTGA 3 cut(s) 726, 764, 784
Hpy166II GTNNAC 3 cut(s) 275, 322, 540
Hpy188I TCNGA 1 cut(s) 722
Hpy188III TCNNGA 6 cut(s) 380, 437, 605, 620, 658, 779
Hpy8I GTNNAC 3 cut(s) 275, 322, 540
HpyAV CCTTC 4 cut(s) 109, 146, 275, 764
HpyCH4III ACNGT 3 cut(s) 38, 58, 907
HpyCH4IV ACGT 2 cut(s) 277, 634
HpyCH4V TGCA 3 cut(s) 14, 362, 650
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 2 cut(s) 277, 634
Hsp92II CATG 7 cut(s) 190, 195, 520, 623, 791, 995, 1063
Kzo9I GATC 3 cut(s) 510, 654, 1070
LmnI GCTCC 2 cut(s) 557, 988
Lsp1109I GCAGC 3 cut(s) 547, 550, 672
LweI GCATC 2 cut(s) 802, 1072
MaeI CTAG 3 cut(s) 168, 887, 1116
MaeII ACGT 2 cut(s) 277, 634
MaeIII GTNAC 4 cut(s) 67, 295, 551, 790
MalI GATC 3 cut(s) 512, 656, 1072
MboI GATC 3 cut(s) 510, 654, 1070
MboII GAAGA 6 cut(s) 94, 193, 520, 767, 928, 1091
MflI RGATCY 2 cut(s) 510, 1070
MhlI GDGCHC 1 cut(s) 235
MlyI GAGTC 1 cut(s) 769
MmeI TCCRAC 1 cut(s) 1063
MnlI CCTC 9 cut(s) 134, 205, 345, 425, 588, 806, 868, 937, 1046
MseI TTAA 8 cut(s) 33, 60, 393, 570, 806, 897, 936, 1005
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 1 cut(s) 1092
MspR9I CCNGG 2 cut(s) 706, 1076
Mva1269I GAATGC 1 cut(s) 362
MvaI CCWGG 2 cut(s) 706, 1076
NdeII GATC 3 cut(s) 510, 654, 1070
NlaIII CATG 7 cut(s) 190, 195, 520, 623, 791, 995, 1063
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 2 cut(s) 295, 790
NspI RCATGY 3 cut(s) 195, 520, 791
PagI TCATGA 1 cut(s) 619
PciI ACATGT 2 cut(s) 191, 516
PctI GAATGC 1 cut(s) 362
PinAI ACCGGT 1 cut(s) 1091
PkrI GCNGC 3 cut(s) 562, 565, 687
PleI GAGTC 1 cut(s) 769
PpsI GAGTC 1 cut(s) 769
Ppu21I YACGTR 1 cut(s) 278
PscI ACATGT 2 cut(s) 191, 516
PshBI ATTAAT 1 cut(s) 806
Psp124BI GAGCTC 1 cut(s) 235
Psp6I CCWGG 2 cut(s) 704, 1074
PspGI CCWGG 2 cut(s) 704, 1074
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 2 cut(s) 434, 575
PstI CTGCAG 1 cut(s) 16
PsuI RGATCY 2 cut(s) 510, 1070
PvuII CAGCTG 1 cut(s) 467
RsaI GTAC 2 cut(s) 260, 521
RsaNI GTAC 2 cut(s) 259, 520
SacI GAGCTC 1 cut(s) 235
SaqAI TTAA 8 cut(s) 33, 60, 393, 570, 806, 897, 936, 1005
SatI GCNGC 3 cut(s) 561, 564, 686
Sau3AI GATC 3 cut(s) 510, 654, 1070
Sau96I GGNCC 2 cut(s) 434, 575
ScaI AGTACT 1 cut(s) 260
SchI GAGTC 1 cut(s) 769
ScrFI CCNGG 2 cut(s) 706, 1076
SduI GDGCHC 1 cut(s) 235
SfaNI GCATC 2 cut(s) 802, 1072
SfcI CTRYAG 2 cut(s) 12, 906
SinI GGWCC 2 cut(s) 434, 575
SmlI CTYRAG 3 cut(s) 254, 302, 777
SmoI CTYRAG 3 cut(s) 254, 302, 777
SspMI CTAG 3 cut(s) 168, 887, 1116
SstI GAGCTC 1 cut(s) 235
StyD4I CCNGG 2 cut(s) 704, 1074
TaaI ACNGT 3 cut(s) 38, 58, 907
TaiI ACGT 2 cut(s) 280, 637
TaqI TCGA 2 cut(s) 366, 1014
TatI WGTACW 2 cut(s) 258, 519
Tru1I TTAA 8 cut(s) 33, 60, 393, 570, 806, 897, 936, 1005
Tru9I TTAA 8 cut(s) 33, 60, 393, 570, 806, 897, 936, 1005
TscAI CASTG 2 cut(s) 657, 856
TseFI GTSAC 2 cut(s) 295, 790
TseI GCWGC 3 cut(s) 560, 563, 685
Tsp45I GTSAC 2 cut(s) 295, 790
TspDTI ATGAA 5 cut(s) 608, 929, 996, 1008, 1068
TspGWI ACGGA 2 cut(s) 570, 586
TspRI CASTG 2 cut(s) 657, 856
VpaK11BI GGWCC 2 cut(s) 434, 575
VspI ATTAAT 1 cut(s) 806
XapI RAATTY 2 cut(s) 608, 615
XceI RCATGY 3 cut(s) 195, 520, 791
XcmI CCANNNNNNNNNTGG 1 cut(s) 120
XmiI GTMKAC 3 cut(s) 274, 321, 539
XspI CTAG 3 cut(s) 168, 887, 1116
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.