MD10G1333900.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
41142404 .. 41143763
1360 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1333900.v1.1.491

Sequence Viewer

Length: 471 bp
ATGCAGAAGAAAACAGAAACAAAGAGGAAGAAAAAGGGAAAAATAGGTGATGAGCATCCAGACACCATAAAAAAATTGGGTATGATCGGATTGAGCTATGGATTTTCGTTAGGTCAAGAAGAAATAGGTGATGAGCATCAAGATAGCGAAGAGCCCCTCAGTCAAGAAGAAATAGGTCATGAGCATCAAGACAGCAAAGAGCTACCCAGTCAAGAAGAAGTAGGTGATGAGCAGAGAAACACAAAAGGTCAAGAAGAAATAGATGATGAGCAGAGAAACACGAAAGATCTAGGCATGCAGAAGAACAGAGAAACAAAGAGGAAGAAAAAGGAAAAAATAGGTGATGAGCATCCAGACACCGTAAAACAATTGGGTATGATCGGATTGAGCTATGGATTTTCGTTAGGTCAAGAAGAAATAGGTGATGAGCATCAAGATAGCGAAGAGCTCCCGAGTAAGTCTATAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

157

Amino Acids

17.73

Weight (kDa)

4.95

Isoelectric Point (pI)

51.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 5 cut(s) 96, 202, 390, 448, 468
AluI AGCT 5 cut(s) 96, 202, 390, 448, 468
Alw21I GWGCWC 1 cut(s) 450
Ama87I CYCGRG 1 cut(s) 451
AsuHPI GGTGA 5 cut(s) 59, 140, 236, 353, 434
AvaI CYCGRG 1 cut(s) 451
BanII GRGCYC 2 cut(s) 156, 450
Bbv12I GWGCWC 1 cut(s) 450
BfaI CTAG 1 cut(s) 290
BglII AGATCT 1 cut(s) 286
BmeT110I CYCGRG 1 cut(s) 451
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 5 cut(s) 64, 145, 193, 358, 439
BmuI ACTGGG 1 cut(s) 201
BsaBI GATNNNNATC 4 cut(s) 54, 135, 348, 429
Bse1I ACTGG 1 cut(s) 207
Bse8I GATNNNNATC 4 cut(s) 54, 135, 348, 429
BseGI GGATG 2 cut(s) 55, 349
BseJI GATNNNNATC 4 cut(s) 54, 135, 348, 429
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 450
BsiHKCI CYCGRG 1 cut(s) 451
BsoBI CYCGRG 1 cut(s) 451
Bsp1286I GDGCHC 2 cut(s) 156, 450
Bsp143I GATC 3 cut(s) 84, 286, 378
BspCNI CTCAG 1 cut(s) 171
BspHI TCATGA 1 cut(s) 178
BspQI GCTCTTC 2 cut(s) 144, 438
BsrI ACTGG 1 cut(s) 207
BssMI GATC 3 cut(s) 84, 286, 378
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 2 cut(s) 144, 438
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 1 cut(s) 158
BstF5I GGATG 2 cut(s) 55, 349
BstKTI GATC 3 cut(s) 87, 289, 381
BstMBI GATC 3 cut(s) 84, 286, 378
BstNSI RCATGY 1 cut(s) 298
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BtsCI GGATG 2 cut(s) 55, 349
Cac8I GCNNGC 1 cut(s) 296
CciI TCATGA 1 cut(s) 178
CviAII CATG 2 cut(s) 179, 295
CviJI RGCY 6 cut(s) 96, 154, 202, 390, 448, 468
CviKI_1 RGCY 6 cut(s) 96, 154, 202, 390, 448, 468
DdeI CTNAG 1 cut(s) 158
DpnI GATC 3 cut(s) 86, 288, 380
DpnII GATC 3 cut(s) 84, 286, 378
Eam1104I CTCTTC 2 cut(s) 144, 438
EarI CTCTTC 2 cut(s) 144, 438
Ecl136II GAGCTC 1 cut(s) 448
Eco24I GRGCYC 2 cut(s) 156, 450
Eco53kI GAGCTC 1 cut(s) 448
Eco88I CYCGRG 1 cut(s) 451
EcoICRI GAGCTC 1 cut(s) 448
EcoT38I GRGCYC 2 cut(s) 156, 450
FaeI CATG 2 cut(s) 182, 298
FaiI YATR 8 cut(s) 68, 83, 99, 180, 296, 377, 393, 464
FatI CATG 2 cut(s) 178, 294
FokI GGATG 2 cut(s) 42, 336
FriOI GRGCYC 2 cut(s) 156, 450
FspBI CTAG 1 cut(s) 290
Hin1II CATG 2 cut(s) 182, 298
HphI GGTGA 5 cut(s) 59, 140, 236, 353, 434
Hpy188I TCNGA 2 cut(s) 89, 383
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4V TGCA 2 cut(s) 4, 298
HpyF3I CTNAG 1 cut(s) 158
Hsp92II CATG 2 cut(s) 182, 298
Kzo9I GATC 3 cut(s) 84, 286, 378
LguI GCTCTTC 2 cut(s) 144, 438
LmnI GCTCC 1 cut(s) 453
LpnPI CCDG 3 cut(s) 72, 220, 366
LweI GCATC 5 cut(s) 64, 145, 193, 358, 439
MaeI CTAG 1 cut(s) 290
MalI GATC 3 cut(s) 86, 288, 380
MboI GATC 3 cut(s) 84, 286, 378
MfeI CAATTG 1 cut(s) 368
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 2 cut(s) 156, 450
MluCI AATT 2 cut(s) 74, 368
MnlI CCTC 3 cut(s) 18, 167, 312
MunI CAATTG 1 cut(s) 368
NdeII GATC 3 cut(s) 84, 286, 378
NlaIII CATG 2 cut(s) 182, 298
NspI RCATGY 1 cut(s) 298
PaeI GCATGC 1 cut(s) 298
PagI TCATGA 1 cut(s) 178
PciSI GCTCTTC 2 cut(s) 144, 438
Psp124BI GAGCTC 1 cut(s) 450
PsuI RGATCY 1 cut(s) 286
SacI GAGCTC 1 cut(s) 450
SapI GCTCTTC 2 cut(s) 144, 438
Sau3AI GATC 3 cut(s) 84, 286, 378
SduI GDGCHC 2 cut(s) 156, 450
SfaNI GCATC 5 cut(s) 64, 145, 193, 358, 439
SphI GCATGC 1 cut(s) 298
Sse9I AATT 2 cut(s) 74, 368
SspMI CTAG 1 cut(s) 290
SstI GAGCTC 1 cut(s) 450
TaaI ACNGT 1 cut(s) 361
TasI AATT 2 cut(s) 74, 368
XceI RCATGY 1 cut(s) 298
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.