Rh4DG035300

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000236
Physical Location & Seq
Reverse (-)
5927195 .. 5927554
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG035300.1

Sequence Viewer

Length: 360 bp
ATGTGTATGTTGTGTGTGGAAATGCAGGCTTATGATTTACATCGAAAAGGAAGGCTGGTGGACTTGGTTGACAAAACCTTGTCTACCAAGTATGATGCAAAACAAGCCATAATCATCTTGAATTTAGCAGTAAAGTGCACCAGTATATCTCCAACTCTGAGGCCTACTATGTCTGAAGTAGTGAGTGTTCTCGTTGGCGACAAAAAAATTGAGGAGATTTGTCCCCCTGCTCTTAATGATAGTCACCTTGCTCGAGTTGATTCCTCTGTTTCTATGGAAGCAACTTCGAGAGCATCCACCTCATCCAATTTGATCAAAGGAGAAGATGAAACAGAACACATTTCTGAGAGTACCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

119

Amino Acids

13.01

Weight (kDa)

5.3

Isoelectric Point (pI)

54.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 83
AcsI RAATTY 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 1 cut(s) 352
AgsI TTSAA 1 cut(s) 121
Alw21I GWGCWC 1 cut(s) 140
Alw44I GTGCAC 1 cut(s) 136
Ama87I CYCGRG 1 cut(s) 252
AoxI GGCC 1 cut(s) 161
ApaLI GTGCAC 1 cut(s) 136
ApoI RAATTY 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 236
AvaI CYCGRG 1 cut(s) 252
BaeGI GKGCMC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 140
BclI TGATCA 1 cut(s) 312
BfaI CTAG 1 cut(s) 358
BmeT110I CYCGRG 1 cut(s) 252
BmsI GCATC 2 cut(s) 85, 302
BsaBI GATNNNNATC 1 cut(s) 39
Bse1I ACTGG 1 cut(s) 141
Bse8I GATNNNNATC 1 cut(s) 39
BseGI GGATG 2 cut(s) 293, 302
BseJI GATNNNNATC 1 cut(s) 39
BseMII CTCAG 2 cut(s) 149, 336
BseNI ACTGG 1 cut(s) 141
BseRI GAGGAG 1 cut(s) 227
BseSI GKGCMC 1 cut(s) 140
BshFI GGCC 1 cut(s) 163
BsiHKAI GWGCWC 1 cut(s) 140
BsiHKCI CYCGRG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 207
BsnI GGCC 1 cut(s) 163
BsoBI CYCGRG 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 1 cut(s) 312
BspANI GGCC 1 cut(s) 163
BspCNI CTCAG 2 cut(s) 150, 337
BsrI ACTGG 1 cut(s) 141
BssMI GATC 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 158, 345
BstF5I GGATG 2 cut(s) 293, 302
BstKTI GATC 1 cut(s) 315
BstMBI GATC 1 cut(s) 312
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstSLI GKGCMC 1 cut(s) 140
BsuRI GGCC 1 cut(s) 163
BtsCI GGATG 2 cut(s) 293, 302
Cac8I GCNNGC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 351
CviJI RGCY 4 cut(s) 29, 55, 107, 163
CviKI_1 RGCY 4 cut(s) 29, 55, 107, 163
CviQI GTAC 1 cut(s) 351
DdeI CTNAG 2 cut(s) 158, 345
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
Eco147I AGGCCT 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 252
FaiI YATR 7 cut(s) 8, 33, 93, 110, 146, 170, 275
FaqI GGGAC 1 cut(s) 207
FbaI TGATCA 1 cut(s) 312
FblI GTMKAC 1 cut(s) 83
FokI GGATG 2 cut(s) 280, 289
FspBI CTAG 1 cut(s) 358
HaeIII GGCC 1 cut(s) 163
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 1 cut(s) 260
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 4 cut(s) 61, 70, 84, 138
Hpy188I TCNGA 3 cut(s) 159, 175, 346
Hpy188III TCNNGA 2 cut(s) 118, 288
Hpy8I GTNNAC 4 cut(s) 61, 70, 84, 138
HpyAV CCTTC 1 cut(s) 45
HpyCH4V TGCA 3 cut(s) 25, 98, 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 2 cut(s) 158, 345
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 1 cut(s) 312
LpnPI CCDG 4 cut(s) 11, 41, 154, 240
LweI GCATC 2 cut(s) 85, 302
MaeI CTAG 1 cut(s) 358
MaeIII GTNAC 1 cut(s) 242
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MboII GAAGA 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 3 cut(s) 121, 207, 307
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 4 cut(s) 153, 205, 274, 310
MseI TTAA 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 1 cut(s) 312
NmuCI GTSAC 1 cut(s) 242
PaeR7I CTCGAG 1 cut(s) 252
PceI AGGCCT 1 cut(s) 163
PfeI GAWTC 1 cut(s) 260
PspXI VCTCGAGB 1 cut(s) 252
PsrI GAACNNNNNNTAC 2 cut(s) 171, 203
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 234
Sau3AI GATC 1 cut(s) 312
SduI GDGCHC 1 cut(s) 140
SetI ASST 3 cut(s) 80, 249, 302
SfaNI GCATC 2 cut(s) 85, 302
Sfr274I CTCGAG 1 cut(s) 252
SlaI CTCGAG 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 252
SmoI CTYRAG 1 cut(s) 252
Sse9I AATT 3 cut(s) 121, 207, 307
SseBI AGGCCT 1 cut(s) 163
SspMI CTAG 1 cut(s) 358
StuI AGGCCT 1 cut(s) 163
TaqI TCGA 3 cut(s) 43, 253, 287
TasI AATT 3 cut(s) 121, 207, 307
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseFI GTSAC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 342
VneI GTGCAC 1 cut(s) 136
XapI RAATTY 1 cut(s) 121
XhoI CTCGAG 1 cut(s) 252
XmiI GTMKAC 1 cut(s) 83
XspI CTAG 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.