RLG00000009856

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
58948252 .. 58953621
5370 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009856

Sequence Viewer

Length: 987 bp
ATGGGGACCGAAGCTTCAGCGAGACTTGTCCACTTTACTATTATAAGTATATGCCTCATCTTTACCCTCCGTCAGCTTGGTTCTGAATTCAAATATCAGAGTATAGCTCAAAAGTTGCCCCATGAAGAAGAGAGAGCTCTTCAGCAAGTAGTAGAGAAGTTGGAGTTAAACAACCGAAAGTCCTCTAGAGGCTGCAATAAGAGCAATAATGATGACATCATATGTGACTGCAGTTTTCAAAACCACACCACTTGCCATGTCACAGAAATTGCACTGATGGCTAGCGGTTTGACTGGAATTATACCTGAAGAACTAGGCAGGCTCACACATCTGAGGGAACTGGATCTCAGTAGCAATCAATTGACTGGTTCTATACCCACTAGCTTGGGAAATTTACCTTCACTTTACAAGCTGAATCTTGGCAAAAATCAATTGACCGGGCCCATTCCAGTGAATTTGGGAAATATGAAATTTCAAGTCCTCATGGATCATACTTCGCACCGCAGCATGGTTGTTAACTTCAAACTGGATCTTTCAAACAATCAATTAAATGGACCCATACCGGCCACTTTAACGAATGTGACTGTCTCTCCTGTGGCATCTGATCCAGATGCCTACCGACTCTTCAAGCTTAACCAATACGACAGGGTTAATGTTGACCCAGATTTCTTCTTGGATCTTTCAAGCAATCAACTGACTGGGCCTATACCAGAGAGCTTAGGGAATTTGACTTTCCTCAGTAGTATTAATCTGTATAACAACTTTCTCAACGGCCCTATACCAGCATCTTTGGGTGAACTGACTTATCTGCTTGGTCTCGGGGTCGCATCTAACAATATCACTGGGACATTACCAATAAGTTTTGCCAGCCTTCCGAATCTGTCTGATACTAAGAAATTGCTCAATCACGGGTCAAATTCCTTCTTACATTGGAGATATGTCATCATTAACGAACATAGACTTGAGCTTCAACAGGTTAACGGGTAG

Protein Analysis

329

Amino Acids

36.24

Weight (kDa)

6.2

Isoelectric Point (pI)

23.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 86 - 145 2.2e-09 Leucine rich repeat
LRR_4 PF12799 109 - 146 2.4e-07 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 44
AciI CCGC 2 cut(s) 285, 502
AclWI GGATC 5 cut(s) 351, 495, 537, 599, 684
AcoI YGGCCR 1 cut(s) 564
AcsI RAATTY 6 cut(s) 86, 391, 454, 470, 724, 916
AcuI CTGAAG 2 cut(s) 125, 327
AfiI CCNNNNNNNGG 1 cut(s) 508
AgsI TTSAA 8 cut(s) 91, 239, 476, 523, 537, 628, 684, 971
AluBI AGCT 9 cut(s) 14, 76, 107, 137, 384, 412, 631, 717, 967
AluI AGCT 9 cut(s) 14, 76, 107, 137, 384, 412, 631, 717, 967
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 3 cut(s) 16, 592, 821
AlwI GGATC 5 cut(s) 351, 495, 537, 599, 684
Ama87I CYCGRG 1 cut(s) 818
AoxI GGCC 4 cut(s) 440, 564, 701, 772
ApaI GGGCCC 1 cut(s) 444
ApeKI GCWGC 2 cut(s) 192, 504
ApoI RAATTY 6 cut(s) 86, 391, 454, 470, 724, 916
AseI ATTAAT 1 cut(s) 747
AspS9I GGNCC 6 cut(s) 6, 440, 441, 554, 701, 773
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 1 cut(s) 806
AsuNHI GCTAGC 1 cut(s) 281
AvaI CYCGRG 1 cut(s) 818
AvaII GGWCC 2 cut(s) 6, 554
BaeGI GKGCMC 1 cut(s) 444
BanII GRGCYC 2 cut(s) 139, 444
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 2 cut(s) 179, 516
BccI CCATC 1 cut(s) 271
BceAI ACGGC 1 cut(s) 787
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 3 cut(s) 16, 592, 821
BfaI CTAG 4 cut(s) 186, 282, 314, 381
BfmI CTRYAG 1 cut(s) 229
BisI GCNGC 2 cut(s) 193, 505
BlsI GCNGC 2 cut(s) 194, 506
Bme1390I CCNGG 1 cut(s) 439
Bme18I GGWCC 2 cut(s) 6, 554
BmeT110I CYCGRG 1 cut(s) 818
BmgT120I GGNCC 6 cut(s) 6, 440, 441, 554, 701, 773
BmiI GGNNCC 3 cut(s) 7, 442, 556
BmrFI CCNGG 1 cut(s) 439
BmrI ACTGGG 2 cut(s) 708, 852
BmsI GCATC 4 cut(s) 601, 608, 794, 836
BmtI GCTAGC 1 cut(s) 285
BmuI ACTGGG 2 cut(s) 708, 852
BplI GAGNNNNNCTC 2 cut(s) 91, 123
Bpu10I CCTNAGC 1 cut(s) 718
BpuEI CTTGAG 1 cut(s) 983
BpuMI CCSGG 1 cut(s) 439
BsaI GGTCTC 1 cut(s) 821
BsaXI ACNNNNNCTCC 2 cut(s) 574, 604
Bsc4I CCNNNNNNNGG 1 cut(s) 508
Bse118I RCCGGY 1 cut(s) 562
Bse1I ACTGG 7 cut(s) 298, 345, 370, 449, 531, 703, 847
BseLI CCNNNNNNNGG 1 cut(s) 508
BseMII CTCAG 3 cut(s) 323, 361, 751
BseNI ACTGG 7 cut(s) 298, 345, 370, 449, 531, 703, 847
BseSI GKGCMC 1 cut(s) 444
BseXI GCAGC 2 cut(s) 179, 516
BshFI GGCC 4 cut(s) 442, 566, 703, 774
BsiHKAI GWGCWC 1 cut(s) 139
BsiHKCI CYCGRG 1 cut(s) 818
BsiSI CCGG 2 cut(s) 438, 563
BslFI GGGAC 2 cut(s) 19, 859
BslI CCNNNNNNNGG 1 cut(s) 508
BsmAI GTCTC 3 cut(s) 16, 592, 821
BsmFI GGGAC 2 cut(s) 19, 859
BsnI GGCC 4 cut(s) 442, 566, 703, 774
Bso31I GGTCTC 1 cut(s) 821
BsoBI CYCGRG 1 cut(s) 818
Bsp120I GGGCCC 1 cut(s) 440
Bsp1286I GDGCHC 2 cut(s) 139, 444
Bsp143I GATC 5 cut(s) 343, 487, 529, 604, 676
BspACI CCGC 2 cut(s) 285, 502
BspANI GGCC 4 cut(s) 442, 566, 703, 774
BspCNI CTCAG 3 cut(s) 324, 360, 750
BspLI GGNNCC 3 cut(s) 7, 442, 556
BspMAI CTGCAG 1 cut(s) 233
BspOI GCTAGC 1 cut(s) 285
BspPI GGATC 5 cut(s) 351, 495, 537, 599, 684
BspQI GCTCTTC 1 cut(s) 144
BspTNI GGTCTC 1 cut(s) 821
BsrFI RCCGGY 1 cut(s) 562
BsrI ACTGG 7 cut(s) 298, 345, 370, 449, 531, 703, 847
BssAI RCCGGY 1 cut(s) 562
BssMI GATC 5 cut(s) 343, 487, 529, 604, 676
Bst4CI ACNGT 1 cut(s) 586
Bst6I CTCTTC 3 cut(s) 123, 144, 629
BstC8I GCNNGC 3 cut(s) 283, 320, 868
BstDEI CTNAG 5 cut(s) 332, 347, 718, 737, 891
BstKTI GATC 5 cut(s) 346, 490, 532, 607, 679
BstMAI GTCTC 3 cut(s) 16, 592, 821
BstMBI GATC 5 cut(s) 343, 487, 529, 604, 676
BstMWI GCNNNNNNNGC 2 cut(s) 201, 278
BstSCI CCNGG 1 cut(s) 437
BstSFI CTRYAG 1 cut(s) 229
BstSLI GKGCMC 1 cut(s) 444
BstV1I GCAGC 2 cut(s) 179, 516
BstX2I RGATCY 3 cut(s) 343, 529, 676
BstXI CCANNNNNNTGG 1 cut(s) 385
BstYI RGATCY 3 cut(s) 343, 529, 676
BsuRI GGCC 4 cut(s) 442, 566, 703, 774
BtsIMutI CAGTG 3 cut(s) 272, 456, 840
Cac8I GCNNGC 3 cut(s) 283, 320, 868
Cfr10I RCCGGY 1 cut(s) 562
Cfr13I GGNCC 6 cut(s) 6, 440, 441, 554, 701, 773
CspCI CAANNNNNGTGG 2 cut(s) 233, 268
CviAII CATG 4 cut(s) 122, 257, 484, 508
DdeI CTNAG 5 cut(s) 332, 347, 718, 737, 891
DpnI GATC 5 cut(s) 345, 489, 531, 606, 678
DpnII GATC 5 cut(s) 343, 487, 529, 604, 676
EaeI YGGCCR 1 cut(s) 564
Eam1104I CTCTTC 3 cut(s) 123, 144, 629
EarI CTCTTC 3 cut(s) 123, 144, 629
Ecl136II GAGCTC 1 cut(s) 137
Eco24I GRGCYC 2 cut(s) 139, 444
Eco31I GGTCTC 1 cut(s) 821
Eco47I GGWCC 2 cut(s) 6, 554
Eco53kI GAGCTC 1 cut(s) 137
Eco57I CTGAAG 2 cut(s) 125, 327
Eco88I CYCGRG 1 cut(s) 818
EcoICRI GAGCTC 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 86
EcoT38I GRGCYC 2 cut(s) 139, 444
FaeI CATG 4 cut(s) 125, 260, 487, 511
FaqI GGGAC 2 cut(s) 19, 859
FatI CATG 4 cut(s) 121, 256, 483, 507
FauNDI CATATG 1 cut(s) 221
Fnu4HI GCNGC 2 cut(s) 193, 505
FriOI GRGCYC 2 cut(s) 139, 444
Fsp4HI GCNGC 2 cut(s) 193, 505
FspBI CTAG 4 cut(s) 186, 282, 314, 381
GluI GCNGC 2 cut(s) 193, 505
HaeIII GGCC 4 cut(s) 442, 566, 703, 774
HapII CCGG 2 cut(s) 438, 563
Hin1II CATG 4 cut(s) 125, 260, 487, 511
HincII GTYRAC 3 cut(s) 517, 658, 979
HindII GTYRAC 3 cut(s) 517, 658, 979
HindIII AAGCTT 2 cut(s) 12, 629
HinfI GANTC 3 cut(s) 415, 621, 877
HpaI GTTAAC 2 cut(s) 517, 979
HpaII CCGG 2 cut(s) 438, 563
HphI GGTGA 1 cut(s) 806
Hpy166II GTNNAC 5 cut(s) 31, 517, 658, 797, 979
Hpy188I TCNGA 6 cut(s) 85, 99, 333, 604, 876, 886
Hpy188III TCNNGA 2 cut(s) 186, 608
Hpy8I GTNNAC 5 cut(s) 31, 517, 658, 797, 979
HpyAV CCTTC 3 cut(s) 408, 881, 931
HpyCH4III ACNGT 1 cut(s) 586
HpyCH4V TGCA 3 cut(s) 195, 231, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 201, 278
HpyF3I CTNAG 5 cut(s) 332, 347, 718, 737, 891
Hsp92II CATG 4 cut(s) 125, 260, 487, 511
KspAI GTTAAC 2 cut(s) 517, 979
Kzo9I GATC 5 cut(s) 343, 487, 529, 604, 676
LguI GCTCTTC 1 cut(s) 144
Lsp1109I GCAGC 2 cut(s) 179, 516
LweI GCATC 4 cut(s) 601, 608, 794, 836
MaeI CTAG 4 cut(s) 186, 282, 314, 381
MaeIII GTNAC 3 cut(s) 224, 259, 580
MalI GATC 5 cut(s) 345, 489, 531, 606, 678
MboI GATC 5 cut(s) 343, 487, 529, 604, 676
MboII GAAGA 6 cut(s) 131, 137, 140, 320, 616, 661
MfeI CAATTG 2 cut(s) 359, 431
MflI RGATCY 3 cut(s) 343, 529, 676
MhlI GDGCHC 2 cut(s) 139, 444
MlyI GAGTC 1 cut(s) 615
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 7 cut(s) 65, 77, 182, 193, 327, 491, 746
MseI TTAA 9 cut(s) 167, 516, 548, 572, 633, 651, 747, 948, 978
MslI CAYNNNNRTG 1 cut(s) 449
MspI CCGG 2 cut(s) 438, 563
MspR9I CCNGG 1 cut(s) 439
MunI CAATTG 2 cut(s) 359, 431
MwoI GCNNNNNNNGC 2 cut(s) 201, 278
NciI CCSGG 1 cut(s) 439
NdeI CATATG 1 cut(s) 221
NdeII GATC 5 cut(s) 343, 487, 529, 604, 676
NheI GCTAGC 1 cut(s) 281
NlaIII CATG 4 cut(s) 125, 260, 487, 511
NlaIV GGNNCC 3 cut(s) 7, 442, 556
NmuCI GTSAC 3 cut(s) 224, 259, 580
PciSI GCTCTTC 1 cut(s) 144
PfeI GAWTC 2 cut(s) 415, 877
PkrI GCNGC 2 cut(s) 194, 506
PleI GAGTC 1 cut(s) 615
PpsI GAGTC 1 cut(s) 615
PshBI ATTAAT 1 cut(s) 747
PsiI TTATAA 1 cut(s) 44
Psp124BI GAGCTC 1 cut(s) 139
PspN4I GGNNCC 3 cut(s) 7, 442, 556
PspOMI GGGCCC 1 cut(s) 440
PspPI GGNCC 6 cut(s) 6, 440, 441, 554, 701, 773
PstI CTGCAG 1 cut(s) 233
PsuI RGATCY 3 cut(s) 343, 529, 676
RseI CAYNNNNRTG 1 cut(s) 449
SacI GAGCTC 1 cut(s) 139
SapI GCTCTTC 1 cut(s) 144
SaqAI TTAA 9 cut(s) 167, 516, 548, 572, 633, 651, 747, 948, 978
SatI GCNGC 2 cut(s) 193, 505
Sau3AI GATC 5 cut(s) 343, 487, 529, 604, 676
Sau96I GGNCC 6 cut(s) 6, 440, 441, 554, 701, 773
SchI GAGTC 1 cut(s) 615
ScrFI CCNGG 1 cut(s) 439
SduI GDGCHC 2 cut(s) 139, 444
SfaNI GCATC 4 cut(s) 601, 608, 794, 836
SfcI CTRYAG 1 cut(s) 229
SinI GGWCC 2 cut(s) 6, 554
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 962
SmoI CTYRAG 1 cut(s) 962
SsiI CCGC 2 cut(s) 285, 502
SspMI CTAG 4 cut(s) 186, 282, 314, 381
SstI GAGCTC 1 cut(s) 139
StyD4I CCNGG 1 cut(s) 437
TaaI ACNGT 1 cut(s) 586
TaqII GACCGA 1 cut(s) 23
TfiI GAWTC 2 cut(s) 415, 877
Tru1I TTAA 9 cut(s) 167, 516, 548, 572, 633, 651, 747, 948, 978
Tru9I TTAA 9 cut(s) 167, 516, 548, 572, 633, 651, 747, 948, 978
TscAI CASTG 3 cut(s) 279, 456, 847
TseFI GTSAC 3 cut(s) 224, 259, 580
TseI GCWGC 2 cut(s) 192, 504
Tsp45I GTSAC 3 cut(s) 224, 259, 580
TspDTI ATGAA 2 cut(s) 138, 482
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 3 cut(s) 279, 456, 847
VpaK11BI GGWCC 2 cut(s) 6, 554
VspI ATTAAT 1 cut(s) 747
XapI RAATTY 6 cut(s) 86, 391, 454, 470, 724, 916
XbaI TCTAGA 1 cut(s) 185
XspI CTAG 4 cut(s) 186, 282, 314, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.