Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000236

Physical Location & Seq

Genomic Coordinates Forward (+)

34159116 .. 34163005

Gene Structure 3890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG309500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGTACTAAGGCTTCAGCAAGACTTGTTAGTAAATTTATAATTCTCTGCCTCATCTTTACTCTTTGGCAGCTTGGTTCTGAATTCAAAAATCGGAGTATAGCTCAAACGTTGCCCGATGAAGAAGTGAGAGCTTTTAAGCAAGTAGCAAAAAAGTTGGGGTTAAACCTTGGATATCCTGGAGTGTTCTTAGATGGCTCATTCTGCAACCAGAGCTTATTTCTTGGCGTCGGCTGTAACTGCACTTTTCAAAACGACACCATCTGCCATATCAGAAAAATTGAACTAAGTGCTAGCGGTTTGACTGGAGTTATACCTGATGAACTGGCCAATCTCACACATCTAGAGAGCCTGGATCTCAGTATGAATCAATTGACTGGTTCCATACCTGCTAGCTTGGGGAATTTATCTTGGCTCAATGACCTGGATATTTCGAACAATCAATTGATCGGGTCCATTCCAGAGAGTTTGGGGAATATAAAATTTCAAGCGCACTACAGCATTAAGAAGGTTGACTTGATTCGGGGATACTTTAATCTGGATCTTTCAAGCAATCATTTGAGTGGATCCATACCCGTCACTTTAGGGAAATTGGCTGTCCCATCGGCTACCGTCAGCGGATCGCCCCTAGCGCTCTCCCTGGATCTTTCAAACAATCAATTGACTGGGCCTATACCAGAGAGCTTAGGGAATTTGACTTTTGGGAACACATATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

239

Amino Acids

25.72

Weight (kDa)

6.06

Isoelectric Point (pI)

30.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	90 - 149	4.6e-08	Leucine rich repeat
LRR_4	PF12799	113 - 154	2.3e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica	MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica	Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis	pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis	RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata	RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora	Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa	Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha	Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana	Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	397
AciI	CCGC	2 cut(s)	297, 618
AclI	AACGTT	1 cut(s)	110
AclWI	GGATC	6 cut(s)	363, 549, 561, 574, 628, 651
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	5 cut(s)	35, 83, 403, 482, 691
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	7
AfeI	AGCGCT	1 cut(s)	633
AgsI	TTSAA	6 cut(s)	88, 251, 284, 488, 549, 651
AjnI	CCWGG	4 cut(s)	178, 351, 423, 639
AluBI	AGCT	6 cut(s)	73, 104, 134, 216, 396, 684
AluI	AGCT	6 cut(s)	73, 104, 134, 216, 396, 684
AlwI	GGATC	6 cut(s)	363, 549, 561, 574, 628, 651
Aor51HI	AGCGCT	1 cut(s)	633
AoxI	GGCC	2 cut(s)	327, 668
ApeKI	GCWGC	1 cut(s)	70
ApoI	RAATTY	5 cut(s)	35, 83, 403, 482, 691
AspLEI	GCGC	2 cut(s)	493, 634
AspS9I	GGNCC	2 cut(s)	453, 668
AsuII	TTCGAA	1 cut(s)	434
AsuNHI	GCTAGC	2 cut(s)	293, 392
AvaII	GGWCC	1 cut(s)	453
BalI	TGGCCA	1 cut(s)	329
BamHI	GGATCC	1 cut(s)	566
BarI	GAAGNNNNNNTAC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	3 cut(s)	188, 269, 610
BciT130I	CCWGG	4 cut(s)	180, 353, 425, 641
BciVI	GTATCC	1 cut(s)	521
BfaI	CTAG	4 cut(s)	294, 344, 393, 629
BfmI	CTRYAG	1 cut(s)	496
BfoI	RGCGCY	1 cut(s)	635
BfuAI	ACCTGC	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	521
BisI	GCNGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	72
Bme1390I	CCNGG	4 cut(s)	180, 353, 425, 641
Bme18I	GGWCC	1 cut(s)	453
BmgT120I	GGNCC	2 cut(s)	453, 668
BmiI	GGNNCC	3 cut(s)	382, 454, 568
BmrFI	CCNGG	4 cut(s)	180, 353, 425, 641
BmrI	ACTGGG	1 cut(s)	675
BmtI	GCTAGC	2 cut(s)	297, 396
BmuI	ACTGGG	1 cut(s)	675
BplI	GAGNNNNNCTC	2 cut(s)	88, 120
BpmI	CTGGAG	2 cut(s)	201, 327
Bpu10I	CCTNAGC	1 cut(s)	685
Bpu14I	TTCGAA	1 cut(s)	434
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	169, 639
Bse1I	ACTGG	4 cut(s)	310, 330, 382, 670
BseBI	CCWGG	4 cut(s)	180, 353, 425, 641
BseDI	CCNNGG	2 cut(s)	169, 639
BseMII	CTCAG	1 cut(s)	373
BseNI	ACTGG	4 cut(s)	310, 330, 382, 670
BseXI	GCAGC	1 cut(s)	82
BsgI	GTGCAG	1 cut(s)	226
BshFI	GGCC	2 cut(s)	329, 670
BslFI	GGGAC	1 cut(s)	584
BsmFI	GGGAC	1 cut(s)	584
BsnI	GGCC	2 cut(s)	329, 670
Bsp119I	TTCGAA	1 cut(s)	434
Bsp143I	GATC	6 cut(s)	355, 447, 541, 566, 620, 643
BspACI	CCGC	2 cut(s)	297, 618
BspANI	GGCC	2 cut(s)	329, 670
BspCNI	CTCAG	1 cut(s)	372
BspLI	GGNNCC	3 cut(s)	382, 454, 568
BspMI	ACCTGC	1 cut(s)	397
BspOI	GCTAGC	2 cut(s)	297, 396
BspPI	GGATC	6 cut(s)	363, 549, 561, 574, 628, 651
BspT104I	TTCGAA	1 cut(s)	434
BsrI	ACTGG	4 cut(s)	310, 330, 382, 670
BssECI	CCNNGG	2 cut(s)	169, 639
BssMI	GATC	6 cut(s)	355, 447, 541, 566, 620, 643
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	169
Bst2UI	CCWGG	4 cut(s)	180, 353, 425, 641
Bst4CI	ACNGT	1 cut(s)	613
BstACI	GRCGYC	1 cut(s)	228
BstBI	TTCGAA	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	295, 394
BstDEI	CTNAG	5 cut(s)	9, 190, 287, 359, 685
BstH2I	RGCGCY	1 cut(s)	635
BstHHI	GCGC	2 cut(s)	493, 634
BstKTI	GATC	6 cut(s)	358, 450, 544, 569, 623, 646
BstMBI	GATC	6 cut(s)	355, 447, 541, 566, 620, 643
BstMWI	GCNNNNNNNGC	4 cut(s)	204, 213, 240, 631
BstNI	CCWGG	4 cut(s)	180, 353, 425, 641
BstSCI	CCNGG	4 cut(s)	178, 351, 423, 639
BstSFI	CTRYAG	1 cut(s)	496
BstV1I	GCAGC	1 cut(s)	82
BstX2I	RGATCY	4 cut(s)	355, 541, 566, 643
BstYI	RGATCY	4 cut(s)	355, 541, 566, 643
BsuI	GTATCC	1 cut(s)	521
BsuRI	GGCC	2 cut(s)	329, 670
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	2 cut(s)	295, 394
CfoI	GCGC	2 cut(s)	493, 634
Cfr13I	GGNCC	2 cut(s)	453, 668
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	6
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	5 cut(s)	9, 190, 287, 359, 685
DpnI	GATC	6 cut(s)	357, 449, 543, 568, 622, 645
DpnII	GATC	6 cut(s)	355, 447, 541, 566, 620, 643
EaeI	YGGCCR	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	169
Eco32I	GATATC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	453
Eco47III	AGCGCT	1 cut(s)	633
EcoRI	GAATTC	1 cut(s)	83
EcoRII	CCWGG	4 cut(s)	178, 351, 423, 639
EcoRV	GATATC	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	169
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FaqI	GGGAC	1 cut(s)	584
Fnu4HI	GCNGC	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	71
FspBI	CTAG	4 cut(s)	294, 344, 393, 629
GlaI	GCGC	2 cut(s)	492, 633
GluI	GCNGC	1 cut(s)	71
GsuI	CTGGAG	2 cut(s)	201, 327
HaeII	RGCGCY	1 cut(s)	635
HaeIII	GGCC	2 cut(s)	329, 670
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	2 cut(s)	493, 634
Hin1I	GRCGYC	1 cut(s)	228
Hin6I	GCGC	2 cut(s)	491, 632
HinP1I	GCGC	2 cut(s)	491, 632
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HinfI	GANTC	2 cut(s)	367, 520
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	3 cut(s)	82, 96, 275
Hpy188III	TCNNGA	3 cut(s)	344, 461, 539
Hpy8I	GTNNAC	1 cut(s)	514
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	502
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	2 cut(s)	207, 243
HpyF10VI	GCNNNNNNNGC	4 cut(s)	204, 213, 240, 631
HpyF3I	CTNAG	5 cut(s)	9, 190, 287, 359, 685
HpySE526I	ACGT	1 cut(s)	110
Hsp92I	GRCGYC	1 cut(s)	228
HspAI	GCGC	2 cut(s)	491, 632
Kzo9I	GATC	6 cut(s)	355, 447, 541, 566, 620, 643
Lsp1109I	GCAGC	1 cut(s)	82
MaeI	CTAG	4 cut(s)	294, 344, 393, 629
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	2 cut(s)	236, 577
MalI	GATC	6 cut(s)	357, 449, 543, 568, 622, 645
MboI	GATC	6 cut(s)	355, 447, 541, 566, 620, 643
MboII	GAAGA	1 cut(s)	134
MfeI	CAATTG	3 cut(s)	371, 443, 659
MflI	RGATCY	4 cut(s)	355, 541, 566, 643
MlsI	TGGCCA	1 cut(s)	329
MluNI	TGGCCA	1 cut(s)	329
MnlI	CCTC	1 cut(s)	62
Mox20I	TGGCCA	1 cut(s)	329
MscI	TGGCCA	1 cut(s)	329
MseI	TTAA	4 cut(s)	138, 164, 504, 534
MslI	CAYNNNNRTG	2 cut(s)	561, 713
Msp20I	TGGCCA	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	618
MspR9I	CCNGG	4 cut(s)	180, 353, 425, 641
MunI	CAATTG	3 cut(s)	371, 443, 659
MvaI	CCWGG	4 cut(s)	180, 353, 425, 641
MwoI	GCNNNNNNNGC	4 cut(s)	204, 213, 240, 631
NdeII	GATC	6 cut(s)	355, 447, 541, 566, 620, 643
NheI	GCTAGC	2 cut(s)	293, 392
NlaIV	GGNNCC	3 cut(s)	382, 454, 568
NmuCI	GTSAC	1 cut(s)	577
NspV	TTCGAA	1 cut(s)	434
PfeI	GAWTC	2 cut(s)	367, 520
PfoI	TCCNGGA	1 cut(s)	178
PkrI	GCNGC	1 cut(s)	72
PsiI	TTATAA	1 cut(s)	41
Psp1406I	AACGTT	1 cut(s)	110
Psp6I	CCWGG	4 cut(s)	178, 351, 423, 639
PspGI	CCWGG	4 cut(s)	178, 351, 423, 639
PspN4I	GGNNCC	3 cut(s)	382, 454, 568
PspPI	GGNCC	2 cut(s)	453, 668
PsuI	RGATCY	4 cut(s)	355, 541, 566, 643
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	2 cut(s)	561, 713
SaqAI	TTAA	4 cut(s)	138, 164, 504, 534
SatI	GCNGC	1 cut(s)	71
Sau3AI	GATC	6 cut(s)	355, 447, 541, 566, 620, 643
Sau96I	GGNCC	2 cut(s)	453, 668
ScrFI	CCNGG	4 cut(s)	180, 353, 425, 641
SfcI	CTRYAG	1 cut(s)	496
SfuI	TTCGAA	1 cut(s)	434
SinI	GGWCC	1 cut(s)	453
SmiMI	CAYNNNNRTG	2 cut(s)	561, 713
SsiI	CCGC	2 cut(s)	297, 618
SspMI	CTAG	4 cut(s)	294, 344, 393, 629
StyD4I	CCNGG	4 cut(s)	178, 351, 423, 639
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	613
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	434
TfiI	GAWTC	2 cut(s)	367, 520
Tru1I	TTAA	4 cut(s)	138, 164, 504, 534
Tru9I	TTAA	4 cut(s)	138, 164, 504, 534
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	3 cut(s)	135, 336, 380
VpaK11BI	GGWCC	1 cut(s)	453
XapI	RAATTY	5 cut(s)	35, 83, 403, 482, 691
XbaI	TCTAGA	1 cut(s)	343
XspI	CTAG	4 cut(s)	294, 344, 393, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.