Rorug05G0185000

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000236
Physical Location & Seq
Forward (+)
17927116 .. 17927765
650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0185000.1

Sequence Viewer

Length: 423 bp
ATGTTGTTCTTTGTTGGGTTGACATTTTGTCTTGCGAGCCCGGAGTCTACTGCTCCGACCCCGGGTGGAGAGAGTGACTGGTGGACACCTAGACCCGGTAAAAAGTATTTTGTGCGGATTGTGAACGACCTCAATAAACAGAAACTCGACTATCCTTATAAATCTGTAGACGATGATCTCAGACTTCGTAGTCTTCCTCATCAAGCGCAGTACGAGTTTGGATTTAGGCTCAACTTCGCAGAACCGATCAAAGTTTTCTTCCCGATTGTGGTGGAGTGCATTGCATATGGAAGGCTCAAGAGGATGGACTATACTTATATAATATTGCGGATGCAGATCTTGACCAGTGTGTGGAGTACAGCTGTCATCCATGAAGTGGACACTGGCATTTTAGCTGATGTGGTTTTACCTAGCTATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

140

Amino Acids

16.16

Weight (kDa)

6.72

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 159
AasI GACNNNNNNGTC 1 cut(s) 189
AccB7I CCANNNNNTGG 2 cut(s) 351, 376
AccI GTMKAC 2 cut(s) 47, 168
AciI CCGC 2 cut(s) 115, 328
AfaI GTAC 2 cut(s) 212, 358
AfiI CCNNNNNNNGG 5 cut(s) 62, 95, 268, 351, 376
AhdI GACNNNNNGTC 1 cut(s) 27
AluBI AGCT 3 cut(s) 362, 395, 414
AluI AGCT 3 cut(s) 362, 395, 414
Ama87I CYCGRG 1 cut(s) 61
AspLEI GCGC 1 cut(s) 208
AsuC2I CCSGG 4 cut(s) 41, 62, 63, 96
AvaI CYCGRG 1 cut(s) 61
BanII GRGCYC 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 185
BccI CCATC 1 cut(s) 298
BcnI CCSGG 4 cut(s) 41, 62, 63, 96
BfaI CTAG 2 cut(s) 90, 411
BfmI CTRYAG 1 cut(s) 165
BglII AGATCT 1 cut(s) 336
Bme1390I CCNGG 4 cut(s) 41, 62, 63, 96
BmeRI GACNNNNNGTC 1 cut(s) 27
BmeT110I CYCGRG 1 cut(s) 61
BmrFI CCNGG 4 cut(s) 41, 62, 63, 96
BmsI GCATC 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 4 cut(s) 41, 62, 63, 96
BsaBI GATNNNNATC 1 cut(s) 335
BsaJI CCNNGG 2 cut(s) 60, 61
Bsc4I CCNNNNNNNGG 5 cut(s) 62, 95, 268, 351, 376
Bse1I ACTGG 3 cut(s) 83, 345, 388
Bse3DI GCAATG 1 cut(s) 279
Bse8I GATNNNNATC 1 cut(s) 335
BseDI CCNNGG 2 cut(s) 60, 61
BseGI GGATG 3 cut(s) 309, 336, 366
BseJI GATNNNNATC 1 cut(s) 335
BseLI CCNNNNNNNGG 5 cut(s) 62, 95, 268, 351, 376
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 193
BseNI ACTGG 3 cut(s) 83, 345, 388
BsiHKCI CYCGRG 1 cut(s) 61
BsiSI CCGG 3 cut(s) 41, 62, 96
BslI CCNNNNNNNGG 5 cut(s) 62, 95, 268, 351, 376
BsoBI CYCGRG 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 3 cut(s) 175, 246, 336
BspACI CCGC 2 cut(s) 115, 328
BspCNI CTCAG 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 279
BsrI ACTGG 3 cut(s) 83, 345, 388
BssECI CCNNGG 2 cut(s) 60, 61
BssMI GATC 3 cut(s) 175, 246, 336
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 179
BstF5I GGATG 3 cut(s) 309, 336, 366
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 3 cut(s) 178, 249, 339
BstMBI GATC 3 cut(s) 175, 246, 336
BstSCI CCNGG 4 cut(s) 39, 60, 61, 94
BstSFI CTRYAG 1 cut(s) 165
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 336
BstYI RGATCY 1 cut(s) 336
BtsCI GGATG 3 cut(s) 309, 336, 366
BtsIMutI CAGTG 2 cut(s) 352, 381
Cac8I GCNNGC 1 cut(s) 37
CfoI GCGC 1 cut(s) 208
Cfr9I CCCGGG 1 cut(s) 61
Csp6I GTAC 2 cut(s) 211, 357
CviAII CATG 1 cut(s) 371
CviJI RGCY 6 cut(s) 39, 229, 295, 362, 395, 414
CviKI_1 RGCY 6 cut(s) 39, 229, 295, 362, 395, 414
CviQI GTAC 2 cut(s) 211, 357
DdeI CTNAG 1 cut(s) 179
DpnI GATC 3 cut(s) 177, 248, 338
DpnII GATC 3 cut(s) 175, 246, 336
DrdI GACNNNNNNGTC 1 cut(s) 189
DriI GACNNNNNGTC 1 cut(s) 27
DseDI GACNNNNNNGTC 1 cut(s) 189
Eam1105I GACNNNNNGTC 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 41
FaeI CATG 1 cut(s) 374
FaiI YATR 8 cut(s) 159, 286, 288, 312, 318, 320, 372, 417
FatI CATG 1 cut(s) 370
FauNDI CATATG 1 cut(s) 286
FblI GTMKAC 2 cut(s) 47, 168
FokI GGATG 3 cut(s) 316, 343, 353
FriOI GRGCYC 1 cut(s) 41
FspBI CTAG 2 cut(s) 90, 411
GlaI GCGC 1 cut(s) 207
HapII CCGG 3 cut(s) 41, 62, 96
HhaI GCGC 1 cut(s) 208
Hin1II CATG 1 cut(s) 374
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 1 cut(s) 44
HpaII CCGG 3 cut(s) 41, 62, 96
Hpy166II GTNNAC 6 cut(s) 21, 48, 84, 124, 169, 379
Hpy188I TCNGA 2 cut(s) 57, 182
Hpy188III TCNNGA 3 cut(s) 262, 298, 340
Hpy8I GTNNAC 6 cut(s) 21, 48, 84, 124, 169, 379
HpyAV CCTTC 1 cut(s) 285
HpyCH4V TGCA 3 cut(s) 279, 284, 334
HpyF3I CTNAG 1 cut(s) 179
Hsp92II CATG 1 cut(s) 374
HspAI GCGC 1 cut(s) 206
Kzo9I GATC 3 cut(s) 175, 246, 336
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 6 cut(s) 54, 64, 75, 109, 358, 369
LweI GCATC 1 cut(s) 321
MaeI CTAG 2 cut(s) 90, 411
MaeIII GTNAC 1 cut(s) 74
MalI GATC 3 cut(s) 177, 248, 338
MboI GATC 3 cut(s) 175, 246, 336
MboII GAAGA 2 cut(s) 185, 250
MflI RGATCY 1 cut(s) 336
MhlI GDGCHC 1 cut(s) 41
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 3 cut(s) 140, 207, 294
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 3 cut(s) 41, 62, 96
MspR9I CCNGG 4 cut(s) 41, 62, 63, 96
NciI CCSGG 4 cut(s) 41, 62, 63, 96
NdeI CATATG 1 cut(s) 286
NdeII GATC 3 cut(s) 175, 246, 336
NlaIII CATG 1 cut(s) 374
NmuCI GTSAC 1 cut(s) 74
PflMI CCANNNNNTGG 2 cut(s) 351, 376
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PsiI TTATAA 1 cut(s) 159
PsuI RGATCY 1 cut(s) 336
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 2 cut(s) 212, 358
RsaNI GTAC 2 cut(s) 211, 357
Sau3AI GATC 3 cut(s) 175, 246, 336
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 4 cut(s) 41, 62, 63, 96
SduI GDGCHC 1 cut(s) 41
SetI ASST 6 cut(s) 91, 132, 364, 397, 412, 416
SfaNI GCATC 1 cut(s) 321
SfcI CTRYAG 1 cut(s) 165
SmaI CCCGGG 1 cut(s) 63
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SsiI CCGC 2 cut(s) 115, 328
SspI AATATT 1 cut(s) 324
SspMI CTAG 2 cut(s) 90, 411
StyD4I CCNGG 4 cut(s) 39, 60, 61, 94
TaqI TCGA 1 cut(s) 147
TatI WGTACW 1 cut(s) 356
TscAI CASTG 2 cut(s) 352, 388
TseFI GTSAC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 387
TspMI CCCGGG 1 cut(s) 61
TspRI CASTG 2 cut(s) 352, 388
Van91I CCANNNNNTGG 2 cut(s) 351, 376
XmaI CCCGGG 1 cut(s) 61
XmiI GTMKAC 2 cut(s) 47, 168
XspI CTAG 2 cut(s) 90, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.