Rh5DG284400

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000236
Physical Location & Seq
Reverse (-)
35151159 .. 35153917
2759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG284400.1

Sequence Viewer

Length: 1116 bp
ATGTGTTTAATTTCTTCAGACCATTCATTGTTTATAAATTGTGGTGGTGGGGAACCGATTAAAGTTGATGGAAATGTATATGATCAAGATAATGATACATCACAGTTTTACCTAAGTCCAAAAGGAAACTGGGCTCGAAGTAGTGCTGGAAGCACCGTTGATGCCTTCAATTCCAGTGAATTCTTAAAAAGCATGAGATGTGGGCTTTCCTCTGAAGCAACTTTATACAAGAGTGCTCGCAGTTCTCCAGTCTTTCTAAAATATTACGGGTTCTGTTTACGTAAAGGCAAATACAGGGTAATACTTCATTTTGCTGAAATTGTTTGCGAGGATATGAGGTACAAAAGTACAGATAAACGCATATTTGATGTATATATTCAGGGTGAGAGGAAACTAAAGGATTTCAACATTATAGAGAAGGCAGGAGGTCCGAATTTAGTACATGAAGAAAATTTCACAGCGGTTAATGTAAATGATGGCGTATTAGAGATACGCTTCTACTCGGCTGGAAAAGGGACTCTTCAGGGACCTCTCATATCTGCTATATCCGCTTGTGATTTACAGCGAAAAGGAAAGTTGGTGGACTTGGTTGATAAAACCTTGTCTAACAAGTATGATGCAAAACAAGCCATCATCATCTTGAATTTAGCAGTAAAGTGCATCAATATATCGCCAACTCTGAGGCCTACTATGTCTGAAGTTGTGAGTGTTCTCGTTGGCGACAAAAAAATTGAGGAGATCTGTTCCTCTGATCAGATTGAGGACATCAACGACCCCCATGTGAAGGAGATTGCAGAGTTCGCAGTGTCGGAGTACAACAAGAAATCTGGGAAGAAGCTGGAGTTACAGAGCGTGGTGAAGGGCGAGACTCGGGTCGTCCCCGGCGAGAATTATCGGCTCGTCATCGCCGTCAAGGATAACTCGGCGGCGGCTAAGTACGAGGGCGTTGTGTATGAGAGGATTTGGGAGCATACTAGGGAATTGCTCTCCTTCGATAGTCACATTGCACAAGTTGATTCCTCTGTTTCTATGGAAGTAAGCTCGAGAGCATCCACACCATCCAATTTGATCAAAGGGGAAGATGAAACAGAACACATTTCTGAGACTATCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin Pkinase Pkinase_Tyr

Protein Analysis

371

Amino Acids

41.22

Weight (kDa)

5.77

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 9 - 181 5.5e-30 Malectin domain
SQAPI PF16845 253 - 332 1.5e-30 Aspartic acid proteinase inhibitor
Cystatin PF00031 253 - 310 2.8e-12 Cystatin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 35
AciI CCGC 4 cut(s) 461, 549, 926, 929
AcsI RAATTY 4 cut(s) 179, 433, 451, 643
AcuI CTGAAG 3 cut(s) 234, 506, 717
AfaI GTAC 5 cut(s) 341, 349, 441, 815, 938
AfiI CCNNNNNNNGG 1 cut(s) 784
AgsI TTSAA 3 cut(s) 169, 406, 643
AluBI AGCT 2 cut(s) 838, 1041
AluI AGCT 2 cut(s) 838, 1041
Alw21I GWGCWC 1 cut(s) 238
Alw26I GTCTC 2 cut(s) 860, 1097
Ama87I CYCGRG 2 cut(s) 870, 1042
AoxI GGCC 1 cut(s) 683
ApoI RAATTY 4 cut(s) 179, 433, 451, 643
AspS9I GGNCC 2 cut(s) 428, 527
AsuC2I CCSGG 1 cut(s) 882
AsuHPI GGTGA 2 cut(s) 395, 868
AvaI CYCGRG 2 cut(s) 870, 1042
AvaII GGWCC 2 cut(s) 428, 527
BaeI ACNNNNGTAYC 2 cut(s) 331, 364
BanII GRGCYC 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 238
BccI CCATC 4 cut(s) 62, 470, 638, 1066
BceAI ACGGC 1 cut(s) 893
BclI TGATCA 3 cut(s) 82, 751, 1068
BcnI CCSGG 1 cut(s) 882
BcoDI GTCTC 2 cut(s) 860, 1097
BfaI CTAG 2 cut(s) 975, 1114
BglII AGATCT 1 cut(s) 738
BisI GCNGC 2 cut(s) 927, 930
BlsI GCNGC 2 cut(s) 928, 931
Bme1390I CCNGG 1 cut(s) 882
Bme18I GGWCC 2 cut(s) 428, 527
BmeT110I CYCGRG 2 cut(s) 870, 1042
BmgT120I GGNCC 2 cut(s) 428, 527
BmiI GGNNCC 2 cut(s) 54, 528
BmrFI CCNGG 1 cut(s) 882
BmrI ACTGGG 1 cut(s) 139
BmsI GCATC 4 cut(s) 151, 607, 669, 1058
BmuI ACTGGG 1 cut(s) 139
BoxI GACNNNNGTC 1 cut(s) 872
BpmI CTGGAG 2 cut(s) 231, 860
BpuMI CCSGG 1 cut(s) 882
BsaAI YACGTR 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 880
Bsc4I CCNNNNNNNGG 1 cut(s) 784
Bse1I ACTGG 3 cut(s) 134, 174, 248
Bse3DI GCAATG 1 cut(s) 1002
BseDI CCNNGG 1 cut(s) 880
BseGI GGATG 2 cut(s) 1049, 1058
BseLI CCNNNNNNNGG 1 cut(s) 784
BseMI GCAATG 1 cut(s) 1002
BseMII CTCAG 2 cut(s) 671, 1092
BseNI ACTGG 3 cut(s) 134, 174, 248
BseRI GAGGAG 1 cut(s) 749
BshFI GGCC 1 cut(s) 685
BsiHKAI GWGCWC 1 cut(s) 238
BsiHKCI CYCGRG 2 cut(s) 870, 1042
BsiSI CCGG 1 cut(s) 882
BslFI GGGAC 3 cut(s) 529, 540, 863
BslI CCNNNNNNNGG 1 cut(s) 784
BsmAI GTCTC 2 cut(s) 860, 1097
BsmFI GGGAC 3 cut(s) 529, 540, 863
BsnI GGCC 1 cut(s) 685
BsoBI CYCGRG 2 cut(s) 870, 1042
Bsp1286I GDGCHC 2 cut(s) 136, 238
Bsp143I GATC 4 cut(s) 82, 738, 751, 1068
BspACI CCGC 4 cut(s) 461, 549, 926, 929
BspANI GGCC 1 cut(s) 685
BspCNI CTCAG 2 cut(s) 672, 1093
BspLI GGNNCC 2 cut(s) 54, 528
BsrDI GCAATG 1 cut(s) 1002
BsrI ACTGG 3 cut(s) 134, 174, 248
BssECI CCNNGG 1 cut(s) 880
BssMI GATC 4 cut(s) 82, 738, 751, 1068
Bst4CI ACNGT 2 cut(s) 105, 157
Bst6I CTCTTC 1 cut(s) 525
BstBAI YACGTR 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 238
BstDEI CTNAG 4 cut(s) 113, 680, 933, 1101
BstF5I GGATG 2 cut(s) 1049, 1058
BstKTI GATC 4 cut(s) 85, 741, 754, 1071
BstMAI GTCTC 2 cut(s) 860, 1097
BstMBI GATC 4 cut(s) 82, 738, 751, 1068
BstMWI GCNNNNNNNGC 3 cut(s) 548, 626, 800
BstPAI GACNNNNGTC 1 cut(s) 872
BstSCI CCNGG 1 cut(s) 880
BstSNI TACGTA 1 cut(s) 281
BstX2I RGATCY 1 cut(s) 738
BstYI RGATCY 1 cut(s) 738
BsuRI GGCC 1 cut(s) 685
BtgZI GCGATG 1 cut(s) 889
BtsCI GGATG 2 cut(s) 1049, 1058
BtsI GCAGTG 1 cut(s) 810
BtsIMutI CAGTG 2 cut(s) 181, 810
Cac8I GCNNGC 1 cut(s) 238
Cfr13I GGNCC 2 cut(s) 428, 527
Csp6I GTAC 5 cut(s) 340, 348, 440, 814, 937
CviAII CATG 3 cut(s) 193, 443, 779
CviJI RGCY 9 cut(s) 134, 205, 506, 629, 685, 838, 898, 932, 1041
CviKI_1 RGCY 9 cut(s) 134, 205, 506, 629, 685, 838, 898, 932, 1041
CviQI GTAC 5 cut(s) 340, 348, 440, 814, 937
DdeI CTNAG 4 cut(s) 113, 680, 933, 1101
DpnI GATC 4 cut(s) 84, 740, 753, 1070
DpnII GATC 4 cut(s) 82, 738, 751, 1068
Eam1104I CTCTTC 1 cut(s) 525
EarI CTCTTC 1 cut(s) 525
Eco105I TACGTA 1 cut(s) 281
Eco147I AGGCCT 1 cut(s) 685
Eco24I GRGCYC 1 cut(s) 136
Eco47I GGWCC 2 cut(s) 428, 527
Eco57I CTGAAG 3 cut(s) 234, 506, 717
Eco88I CYCGRG 2 cut(s) 870, 1042
EcoO109I RGGNCCY 1 cut(s) 527
EcoRI GAATTC 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 136
FaeI CATG 3 cut(s) 196, 446, 782
FalI AAGNNNNNCTT 2 cut(s) 504, 536
FaqI GGGAC 3 cut(s) 529, 540, 863
FatI CATG 3 cut(s) 192, 442, 778
FbaI TGATCA 3 cut(s) 82, 751, 1068
Fnu4HI GCNGC 2 cut(s) 927, 930
FokI GGATG 2 cut(s) 1036, 1045
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 2 cut(s) 927, 930
FspBI CTAG 2 cut(s) 975, 1114
GluI GCNGC 2 cut(s) 927, 930
GsuI CTGGAG 2 cut(s) 231, 860
HaeIII GGCC 1 cut(s) 685
HapII CCGG 1 cut(s) 882
Hin1II CATG 3 cut(s) 196, 446, 782
HinfI GANTC 3 cut(s) 517, 868, 1016
HpaII CCGG 1 cut(s) 882
HphI GGTGA 2 cut(s) 395, 868
Hpy166II GTNNAC 2 cut(s) 278, 583
Hpy188I TCNGA 9 cut(s) 19, 214, 432, 681, 697, 751, 756, 811, 1102
Hpy188III TCNNGA 3 cut(s) 86, 640, 1044
Hpy8I GTNNAC 2 cut(s) 278, 583
HpyAV CCTTC 5 cut(s) 175, 412, 778, 853, 1000
HpyCH4III ACNGT 2 cut(s) 105, 157
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 4 cut(s) 620, 660, 794, 1007
HpyF10VI GCNNNNNNNGC 3 cut(s) 548, 626, 800
HpyF3I CTNAG 4 cut(s) 113, 680, 933, 1101
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 3 cut(s) 196, 446, 782
Ksp22I TGATCA 3 cut(s) 82, 751, 1068
Kzo9I GATC 4 cut(s) 82, 738, 751, 1068
LmnI GCTCC 1 cut(s) 967
LweI GCATC 4 cut(s) 151, 607, 669, 1058
MaeI CTAG 2 cut(s) 975, 1114
MaeII ACGT 1 cut(s) 280
MaeIII GTNAC 2 cut(s) 843, 998
MalI GATC 4 cut(s) 84, 740, 753, 1070
MboI GATC 4 cut(s) 82, 738, 751, 1068
MboII GAAGA 5 cut(s) 6, 458, 512, 844, 1091
MflI RGATCY 1 cut(s) 738
MhlI GDGCHC 2 cut(s) 136, 238
MlyI GAGTC 2 cut(s) 511, 862
MmeI TCCRAC 1 cut(s) 789
MseI TTAA 4 cut(s) 8, 60, 185, 465
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 1 cut(s) 882
MspR9I CCNGG 1 cut(s) 882
MwoI GCNNNNNNNGC 3 cut(s) 548, 626, 800
NciI CCSGG 1 cut(s) 882
NdeII GATC 4 cut(s) 82, 738, 751, 1068
NlaIII CATG 3 cut(s) 196, 446, 782
NlaIV GGNNCC 2 cut(s) 54, 528
NmeAIII GCCGAG 2 cut(s) 482, 902
NmuCI GTSAC 1 cut(s) 998
PaeR7I CTCGAG 1 cut(s) 1042
PceI AGGCCT 1 cut(s) 685
PcsI WCGNNNNNNNCGW 2 cut(s) 882, 906
PfeI GAWTC 1 cut(s) 1016
PkrI GCNGC 2 cut(s) 928, 931
PleI GAGTC 2 cut(s) 511, 862
PpsI GAGTC 2 cut(s) 511, 862
Ppu21I YACGTR 1 cut(s) 281
PpuMI RGGWCCY 1 cut(s) 527
PshAI GACNNNNGTC 1 cut(s) 872
PsiI TTATAA 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 527
PspN4I GGNNCC 2 cut(s) 54, 528
PspPI GGNCC 2 cut(s) 428, 527
PspPPI RGGWCCY 1 cut(s) 527
PsuI RGATCY 1 cut(s) 738
RsaI GTAC 5 cut(s) 341, 349, 441, 815, 938
RsaNI GTAC 5 cut(s) 340, 348, 440, 814, 937
SaqAI TTAA 4 cut(s) 8, 60, 185, 465
SatI GCNGC 2 cut(s) 927, 930
Sau3AI GATC 4 cut(s) 82, 738, 751, 1068
Sau96I GGNCC 2 cut(s) 428, 527
SchI GAGTC 2 cut(s) 511, 862
ScrFI CCNGG 1 cut(s) 882
SduI GDGCHC 2 cut(s) 136, 238
SetI ASST 8 cut(s) 114, 283, 341, 430, 532, 602, 840, 1043
SfaNI GCATC 4 cut(s) 151, 607, 669, 1058
Sfr274I CTCGAG 1 cut(s) 1042
SinI GGWCC 2 cut(s) 428, 527
SlaI CTCGAG 1 cut(s) 1042
SmlI CTYRAG 1 cut(s) 1042
SmoI CTYRAG 1 cut(s) 1042
SnaBI TACGTA 1 cut(s) 281
SseBI AGGCCT 1 cut(s) 685
SsiI CCGC 4 cut(s) 461, 549, 926, 929
SspI AATATT 1 cut(s) 263
SspMI CTAG 2 cut(s) 975, 1114
StuI AGGCCT 1 cut(s) 685
StyD4I CCNGG 1 cut(s) 880
TaaI ACNGT 2 cut(s) 105, 157
TaiI ACGT 1 cut(s) 283
TaqI TCGA 3 cut(s) 136, 993, 1043
TatI WGTACW 3 cut(s) 347, 439, 813
TauI GCSGC 2 cut(s) 929, 932
TfiI GAWTC 1 cut(s) 1016
Tru1I TTAA 4 cut(s) 8, 60, 185, 465
Tru9I TTAA 4 cut(s) 8, 60, 185, 465
TscAI CASTG 2 cut(s) 181, 810
TseFI GTSAC 1 cut(s) 998
Tsp45I GTSAC 1 cut(s) 998
TspDTI ATGAA 4 cut(s) 15, 296, 459, 1098
TspRI CASTG 2 cut(s) 181, 810
VpaK11BI GGWCC 2 cut(s) 428, 527
XapI RAATTY 4 cut(s) 179, 433, 451, 643
XcmI CCANNNNNNNNNTGG 1 cut(s) 126
XhoI CTCGAG 1 cut(s) 1042
XspI CTAG 2 cut(s) 975, 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.