Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042682.1

Orthogroup ID

OG0000236

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1357

Gene Structure 1357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042682.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 244 bp

atgaaatcagatttagtttacatgtctttttccacaaataagcttaatgggatgatacctgcttggatccttcaggcagtccaaactagagatctatcattcaataatttgtcagtaccggactctggagtaccaataaaccaaaatctgaacttgtttgcttgctgccccaactccgcagacactgaaatgaggtatccattagaaatgatgaatacatactgtccggaaaaggaacaaaaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

81

Amino Acids

9.21

Weight (kDa)

4.77

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica	MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica	Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis	pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis	RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata	RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora	Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa	Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha	Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana	Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	67
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	2 cut(s)	61, 74
AcuI	CTGAAG	1 cut(s)	56
AfaI	GTAC	2 cut(s)	117, 132
AfiI	CCNNNNNNNGG	1 cut(s)	125
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	1 cut(s)	103
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
AlwI	GGATC	2 cut(s)	61, 74
AlwNI	CAGNNNCTG	1 cut(s)	185
Aor13HI	TCCGGA	1 cut(s)	226
ApeKI	GCWGC	1 cut(s)	165
BamHI	GGATCC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	152
BciVI	GTATCC	1 cut(s)	207
BfaI	CTAG	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	67
BfuI	GTATCC	1 cut(s)	207
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	147
BsaWI	WCCGGW	2 cut(s)	118, 226
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
BseAI	TCCGGA	1 cut(s)	226
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	152
BsiSI	CCGG	2 cut(s)	119, 227
BslI	CCNNNNNNNGG	1 cut(s)	125
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	2 cut(s)	66, 91
BspACI	CCGC	1 cut(s)	177
BspEI	TCCGGA	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	68
BspMI	ACCTGC	1 cut(s)	67
BspPI	GGATC	2 cut(s)	61, 74
BssMI	GATC	2 cut(s)	66, 91
Bst4CI	ACNGT	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	2 cut(s)	69, 94
BstMBI	GATC	2 cut(s)	66, 91
BstNSI	RCATGY	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	152
BstX2I	RGATCY	2 cut(s)	66, 91
BstYI	RGATCY	2 cut(s)	66, 91
BsuI	GTATCC	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	183
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	163
CaiI	CAGNNNCTG	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	116, 131
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	1 cut(s)	43
CviKI_1	RGCY	1 cut(s)	43
CviQI	GTAC	2 cut(s)	116, 131
DpnI	GATC	2 cut(s)	68, 93
DpnII	GATC	2 cut(s)	66, 91
Eco57I	CTGAAG	1 cut(s)	56
FaeI	CATG	1 cut(s)	25
FaiI	YATR	2 cut(s)	23, 220
FatI	CATG	1 cut(s)	21
Fnu4HI	GCNGC	1 cut(s)	166
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	166
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	1 cut(s)	166
GsuI	CTGGAG	1 cut(s)	147
HapII	CCGG	2 cut(s)	119, 227
Hin1II	CATG	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	2 cut(s)	119, 227
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	10, 150
Hpy188III	TCNNGA	2 cut(s)	126, 227
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	224
Hsp92II	CATG	1 cut(s)	25
Kpn2I	TCCGGA	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	66, 91
LpnPI	CCDG	5 cut(s)	59, 72, 111, 132, 240
Lsp1109I	GCAGC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	87
MalI	GATC	2 cut(s)	68, 93
MboI	GATC	2 cut(s)	66, 91
MflI	RGATCY	2 cut(s)	66, 91
MluCI	AATT	1 cut(s)	106
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	1 cut(s)	186
MroI	TCCGGA	1 cut(s)	226
MseI	TTAA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	188
MspI	CCGG	2 cut(s)	119, 227
NdeII	GATC	2 cut(s)	66, 91
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	68
NspI	RCATGY	1 cut(s)	25
PciI	ACATGT	1 cut(s)	21
PkrI	GCNGC	1 cut(s)	167
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PscI	ACATGT	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	68
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	2 cut(s)	66, 91
RsaI	GTAC	2 cut(s)	117, 132
RsaNI	GTAC	2 cut(s)	116, 131
RseI	CAYNNNNRTG	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	2 cut(s)	66, 91
SchI	GAGTC	1 cut(s)	116
SetI	ASST	3 cut(s)	45, 61, 197
SmiMI	CAYNNNNRTG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	224
TasI	AATT	1 cut(s)	106
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	1 cut(s)	190
TseI	GCWGC	1 cut(s)	165
TspDTI	ATGAA	2 cut(s)	17, 227
TspRI	CASTG	1 cut(s)	190
XceI	RCATGY	1 cut(s)	25
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.