Rmu_sc0000255.1_g000042

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000255.1
OG0000236
Physical Location & Seq
Reverse (-)
211680 .. 213680
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000255.1_g000042.1.cds

Sequence Viewer

Length: 1080 bp
atgggctggttcagaagcagaaactcacccaaaataaaagtaggtgaagaaaaaaaaggggaagggactcaagacaagcatgtcaccctcaaagaattaatagatgctactggaaagtttagcgacaaaaagataattggcagtggcagtcttggaaaagtttatgaggcacaactactaggtcttattaaaactactgtagctgtgaagagactttcctctcattttaaagaaaatatccaaaaattgaaaaaggaaatcaaatggttatatgaattggagcatgaaaatctcattaaattgttcgattatcatattgagaaagacctccaacttcttgtttatgaatacatggaaaacagatccctggaagatgccttgactgtcgactcaaataccagatcattgaaatttacttgggatactagatccaagatttgcttgggaatagcaaggggtttggagtatctacacaatcatcgtaaactaaatatcgctcatatgaacattaaagctgttaatattcttcttgatggagatcttgagccaaagatatcagattttggattggcacatctttatgttgaggaggatcaatttaaggtcatcaaaagagaagttgcacaaggatatacggcaccagagtattttcaaggaaatttgacgattaaagctgatgtttacagctttggggtgatcctacttgaaattgtttcttggaaaaaaaatgtgatcaaatcacacaatggaactgaggttcttgtggacacggctaatgaaaaacatgaacaaggaaatctcgaggacatgattgataagaatttggaaacttgtgatacacaacaagccctgaccgtcttgaaattagcagtgaagtgcaccagtatagcccctagtgtgaggccttcaatgtctgacgttgtgagtgttctgctaaataaaaagacgattggcgagctttttagatctgctgcccctaatgttggggaaaagatcaagggcagtgggggcgccacttctatggaccttacctctataccatcaacttcatctccttctaccaacaccaaagatgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

359

Amino Acids

40.3

Weight (kDa)

7.69

Isoelectric Point (pI)

32.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AccB1I GGYRCC 2 cut(s) 637, 1010
AccI GTMKAC 1 cut(s) 387
AclWI GGATC 4 cut(s) 357, 423, 600, 691
AcsI RAATTY 3 cut(s) 410, 658, 820
AcyI GRCGYC 1 cut(s) 1011
AfiI CCNNNNNNNGG 1 cut(s) 983
AgsI TTSAA 6 cut(s) 250, 409, 653, 707, 862, 909
AjnI CCWGG 1 cut(s) 366
AloI GAACNNNNNNTCC 2 cut(s) 741, 773
AluBI AGCT 5 cut(s) 203, 515, 674, 687, 958
AluI AGCT 5 cut(s) 203, 515, 674, 687, 958
Alw21I GWGCWC 1 cut(s) 881
Alw26I GTCTC 1 cut(s) 205
Alw44I GTGCAC 1 cut(s) 877
AlwI GGATC 4 cut(s) 357, 423, 600, 691
Ama87I CYCGRG 1 cut(s) 800
AoxI GGCC 1 cut(s) 902
ApaLI GTGCAC 1 cut(s) 877
ApeKI GCWGC 1 cut(s) 971
ApoI RAATTY 3 cut(s) 410, 658, 820
AseI ATTAAT 1 cut(s) 98
AspLEI GCGC 1 cut(s) 1013
AspS9I GGNCC 1 cut(s) 1024
AsuHPI GGTGA 4 cut(s) 18, 56, 76, 706
AvaI CYCGRG 1 cut(s) 800
AvaII GGWCC 1 cut(s) 1024
BaeGI GKGCMC 1 cut(s) 881
BanI GGYRCC 2 cut(s) 637, 1010
Bbv12I GWGCWC 1 cut(s) 881
BbvI GCAGC 1 cut(s) 958
BccI CCATC 2 cut(s) 527, 1048
BceAI ACGGC 2 cut(s) 651, 786
BciT130I CCWGG 1 cut(s) 368
BciVI GTATCC 1 cut(s) 415
BclI TGATCA 1 cut(s) 732
BcoDI GTCTC 1 cut(s) 205
BfaI CTAG 3 cut(s) 179, 426, 894
BfmI CTRYAG 1 cut(s) 198
BfoI RGCGCY 1 cut(s) 1014
BfuI GTATCC 1 cut(s) 415
BglII AGATCT 2 cut(s) 538, 965
BisI GCNGC 1 cut(s) 972
BlsI GCNGC 1 cut(s) 973
Bme1390I CCNGG 1 cut(s) 368
Bme18I GGWCC 1 cut(s) 1024
BmeT110I CYCGRG 1 cut(s) 800
BmgT120I GGNCC 1 cut(s) 1024
BmiI GGNNCC 2 cut(s) 639, 1012
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 2 cut(s) 94, 364
BpuEI CTTGAG 2 cut(s) 54, 563
BsaBI GATNNNNATC 1 cut(s) 537
BsaHI GRCGYC 1 cut(s) 1011
BsaJI CCNNGG 1 cut(s) 366
BsaXI ACNNNNNCTCC 2 cut(s) 1036, 1066
Bsc4I CCNNNNNNNGG 1 cut(s) 983
Bse1I ACTGG 2 cut(s) 115, 882
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 366
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 1 cut(s) 983
BseMII CTCAG 1 cut(s) 744
BseNI ACTGG 2 cut(s) 115, 882
BseRI GAGGAG 1 cut(s) 602
BseSI GKGCMC 1 cut(s) 881
BseXI GCAGC 1 cut(s) 958
BshFI GGCC 1 cut(s) 904
BshNI GGYRCC 2 cut(s) 637, 1010
BsiHKAI GWGCWC 1 cut(s) 881
BsiHKCI CYCGRG 1 cut(s) 800
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 983
BsmAI GTCTC 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 1 cut(s) 904
BsoBI CYCGRG 1 cut(s) 800
Bsp1286I GDGCHC 1 cut(s) 881
Bsp143I GATC 9 cut(s) 362, 401, 428, 538, 592, 696, 732, 965, 993
BspANI GGCC 1 cut(s) 904
BspCNI CTCAG 1 cut(s) 745
BspLI GGNNCC 2 cut(s) 639, 1012
BspPI GGATC 4 cut(s) 357, 423, 600, 691
BspT107I GGYRCC 2 cut(s) 637, 1010
BsrI ACTGG 2 cut(s) 115, 882
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 9 cut(s) 362, 401, 428, 538, 592, 696, 732, 965, 993
BssNI GRCGYC 1 cut(s) 1011
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 3 cut(s) 199, 385, 856
Bst6I CTCTTC 1 cut(s) 203
BstACI GRCGYC 1 cut(s) 1011
BstC8I GCNNGC 1 cut(s) 956
BstDEI CTNAG 1 cut(s) 753
BstH2I RGCGCY 1 cut(s) 1014
BstHHI GCGC 1 cut(s) 1013
BstKTI GATC 9 cut(s) 365, 404, 431, 541, 595, 699, 735, 968, 996
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 9 cut(s) 362, 401, 428, 538, 592, 696, 732, 965, 993
BstMWI GCNNNNNNNGC 1 cut(s) 1008
BstNI CCWGG 1 cut(s) 368
BstNSI RCATGY 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 366
BstSFI CTRYAG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 881
BstV1I GCAGC 1 cut(s) 958
BstX2I RGATCY 4 cut(s) 362, 428, 538, 965
BstXI CCANNNNNNTGG 1 cut(s) 1021
BstYI RGATCY 4 cut(s) 362, 428, 538, 965
BsuI GTATCC 1 cut(s) 415
BsuRI GGCC 1 cut(s) 904
BtsI GCAGTG 3 cut(s) 148, 876, 1009
BtsIMutI CAGTG 3 cut(s) 148, 876, 1009
Cac8I GCNNGC 1 cut(s) 956
CfoI GCGC 1 cut(s) 1013
Cfr13I GGNCC 1 cut(s) 1024
CspCI CAANNNNNGTGG 2 cut(s) 985, 1020
CviAII CATG 5 cut(s) 80, 284, 352, 785, 808
DdeI CTNAG 1 cut(s) 753
DinI GGCGCC 1 cut(s) 1012
DpnI GATC 9 cut(s) 364, 403, 430, 540, 594, 698, 734, 967, 995
DpnII GATC 9 cut(s) 362, 401, 428, 538, 592, 696, 732, 965, 993
DraI TTTAAA 1 cut(s) 229
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco147I AGGCCT 1 cut(s) 904
Eco32I GATATC 1 cut(s) 555
Eco47I GGWCC 1 cut(s) 1024
Eco88I CYCGRG 1 cut(s) 800
EcoRII CCWGG 1 cut(s) 366
EcoRV GATATC 1 cut(s) 555
EgeI GGCGCC 1 cut(s) 1012
EheI GGCGCC 1 cut(s) 1012
FaeI CATG 5 cut(s) 83, 287, 355, 788, 811
FalI AAGNNNNNCTT 2 cut(s) 425, 457
FaqI GGGAC 1 cut(s) 79
FatI CATG 5 cut(s) 79, 283, 351, 784, 807
FauNDI CATATG 1 cut(s) 501
FbaI TGATCA 1 cut(s) 732
FblI GTMKAC 1 cut(s) 387
Fnu4HI GCNGC 1 cut(s) 972
Fsp4HI GCNGC 1 cut(s) 972
FspBI CTAG 3 cut(s) 179, 426, 894
GlaI GCGC 1 cut(s) 1012
GluI GCNGC 1 cut(s) 972
HaeII RGCGCY 1 cut(s) 1014
HaeIII GGCC 1 cut(s) 904
HhaI GCGC 1 cut(s) 1013
Hin1I GRCGYC 1 cut(s) 1011
Hin1II CATG 5 cut(s) 83, 287, 355, 788, 811
Hin6I GCGC 1 cut(s) 1011
HinP1I GCGC 1 cut(s) 1011
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 2 cut(s) 67, 389
HphI GGTGA 4 cut(s) 18, 56, 76, 706
Hpy166II GTNNAC 5 cut(s) 388, 485, 682, 766, 879
Hpy188I TCNGA 3 cut(s) 14, 559, 916
Hpy188III TCNNGA 5 cut(s) 71, 530, 542, 800, 859
Hpy8I GTNNAC 5 cut(s) 388, 485, 682, 766, 879
HpyAV CCTTC 3 cut(s) 56, 915, 1065
HpyCH4III ACNGT 3 cut(s) 199, 385, 856
HpyCH4IV ACGT 1 cut(s) 918
HpyCH4V TGCA 2 cut(s) 623, 879
HpyF10VI GCNNNNNNNGC 1 cut(s) 1008
HpyF3I CTNAG 1 cut(s) 753
HpySE526I ACGT 1 cut(s) 918
Hsp92I GRCGYC 1 cut(s) 1011
Hsp92II CATG 5 cut(s) 83, 287, 355, 788, 811
HspAI GCGC 1 cut(s) 1011
KasI GGCGCC 1 cut(s) 1010
Ksp22I TGATCA 1 cut(s) 732
Kzo9I GATC 9 cut(s) 362, 401, 428, 538, 592, 696, 732, 965, 993
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 7 cut(s) 96, 353, 380, 412, 654, 863, 895
Lsp1109I GCAGC 1 cut(s) 958
LweI GCATC 2 cut(s) 94, 364
MaeI CTAG 3 cut(s) 179, 426, 894
MaeII ACGT 1 cut(s) 918
MaeIII GTNAC 1 cut(s) 82
MalI GATC 9 cut(s) 364, 403, 430, 540, 594, 698, 734, 967, 995
MboI GATC 9 cut(s) 362, 401, 428, 538, 592, 696, 732, 965, 993
MboII GAAGA 4 cut(s) 59, 220, 383, 518
MflI RGATCY 4 cut(s) 362, 428, 538, 965
MhlI GDGCHC 1 cut(s) 881
Mly113I GGCGCC 1 cut(s) 1011
MlyI GAGTC 2 cut(s) 61, 383
MmeI TCCRAC 1 cut(s) 355
MseI TTAA 8 cut(s) 98, 189, 228, 297, 510, 519, 600, 669
MslI CAYNNNNRTG 2 cut(s) 579, 1019
MspR9I CCNGG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 1 cut(s) 1008
NarI GGCGCC 1 cut(s) 1011
NdeI CATATG 1 cut(s) 501
NdeII GATC 9 cut(s) 362, 401, 428, 538, 592, 696, 732, 965, 993
NlaIII CATG 5 cut(s) 83, 287, 355, 788, 811
NlaIV GGNNCC 2 cut(s) 639, 1012
NmuCI GTSAC 1 cut(s) 82
NspI RCATGY 1 cut(s) 83
PaeR7I CTCGAG 1 cut(s) 800
PceI AGGCCT 1 cut(s) 904
PkrI GCNGC 1 cut(s) 973
PleI GAGTC 2 cut(s) 61, 383
PluTI GGCGCC 1 cut(s) 1014
PpsI GAGTC 2 cut(s) 61, 383
PshBI ATTAAT 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 2 cut(s) 639, 1012
PspPI GGNCC 1 cut(s) 1024
PsuI RGATCY 4 cut(s) 362, 428, 538, 965
RseI CAYNNNNRTG 2 cut(s) 579, 1019
SalI GTCGAC 1 cut(s) 386
SaqAI TTAA 8 cut(s) 98, 189, 228, 297, 510, 519, 600, 669
SatI GCNGC 1 cut(s) 972
Sau3AI GATC 9 cut(s) 362, 401, 428, 538, 592, 696, 732, 965, 993
Sau96I GGNCC 1 cut(s) 1024
SchI GAGTC 2 cut(s) 61, 383
ScrFI CCNGG 1 cut(s) 368
SduI GDGCHC 1 cut(s) 881
SfaNI GCATC 2 cut(s) 94, 364
SfcI CTRYAG 1 cut(s) 198
SfoI GGCGCC 1 cut(s) 1012
Sfr274I CTCGAG 1 cut(s) 800
SinI GGWCC 1 cut(s) 1024
SlaI CTCGAG 1 cut(s) 800
SmiMI CAYNNNNRTG 2 cut(s) 579, 1019
SmlI CTYRAG 3 cut(s) 69, 542, 800
SmoI CTYRAG 3 cut(s) 69, 542, 800
SseBI AGGCCT 1 cut(s) 904
SspDI GGCGCC 1 cut(s) 1010
SspI AATATT 1 cut(s) 523
SspMI CTAG 3 cut(s) 179, 426, 894
StuI AGGCCT 1 cut(s) 904
StyD4I CCNGG 1 cut(s) 366
TaaI ACNGT 3 cut(s) 199, 385, 856
TaiI ACGT 1 cut(s) 921
TaqI TCGA 3 cut(s) 306, 387, 801
Tru1I TTAA 8 cut(s) 98, 189, 228, 297, 510, 519, 600, 669
Tru9I TTAA 8 cut(s) 98, 189, 228, 297, 510, 519, 600, 669
TscAI CASTG 3 cut(s) 148, 876, 1009
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 971
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 7 cut(s) 288, 300, 360, 518, 792, 801, 1038
TspRI CASTG 3 cut(s) 148, 876, 1009
VneI GTGCAC 1 cut(s) 877
VpaK11BI GGWCC 1 cut(s) 1024
VspI ATTAAT 1 cut(s) 98
XapI RAATTY 3 cut(s) 410, 658, 820
XceI RCATGY 1 cut(s) 83
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XhoI CTCGAG 1 cut(s) 800
XmiI GTMKAC 1 cut(s) 387
XspI CTAG 3 cut(s) 179, 426, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.