Rw4G002940

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
5821793 .. 5831353
9561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G002940.1

Sequence Viewer

Length: 3222 bp
ATGGGAACCGAAGCTTCAGCGAGACTTGTCAGCTATACTATTATAAGTATATGCCTCTTCTCTACTCTTTCTCAGCTTGGTTCTGAATTCAAATGTCAGAGTATAGCTCAAAAGTTGCCCGATGAAGAAGTGACAGCTCTTAATCAAATAATAGAGAAGTTGGAGTTCAACGATATTAATCGAGTGCCCTCTAAATCATTTTGCAAAAAGAGCGGTCGTGATGGCATCAGATGTAACTGCAGTTTTCAAAACGGCACCATTTGCCATGTCACAGAAATGGATCTTAGTAGGAATCAATTGACTGGTTCTATACCTGCTAGCTTGGGGAATTTATCTTCGTTGTACAAGCTGATTCTTTACAGCAATCAATTGACCGGGCCCATTCCAGAGGGTTTGGGAAATATGAAATTTCAAGTCCGCATGGATCATACTTCCCGCAGCATGGCTGTTAGCTTCGAACTGGATCTTTCATACAATCAATTAAGTGGATCCATACCAGCCACTTTAAGGAATGTGGATGTCTCTGATGTGGCATCTGATCCAGATGCCTACCGACTCTTCAAGCTTAAGCAATACGACAGGGCTAATGTTAACCCAGATTTCTACATGGATCTTTCACACAATCAACTGATTGGGCCTATACCAGAGAGCTTAGGGAATTTGTCTTTCATTAGTTATATTGCTCTGGCGGACAACCATCTCAACGGCTCTATACCAGCATCTTTGGGTGCACTGACTTATCTGCGTGAACTGGATTTGGATAACAATCGAATCTCCGGTACTCTCCCACAAACACTAGGAAATTTGACACTCCTTGAAATCTTCGTGGTTGGATCTAACAATATCACTGGGACATTACCAAAATGTTTTGCCAGCCTTACGACATTGTATGCATTTCTCATAGCTGGTAACTATTTGTCTGGCCCTTTACCTGACTTCATAGCCAACTGGACTTCAATCGAAACGATTTTTCTCAACGGAAACAATTTCAACGGGAAGATACCTGCCGGAATTTTTAACTTATCACATCTAGAAGTTTTGGCAATGAGTGATGTTGAAGCAGACTCTCATTTCCAGTTCCCACCATCTACATATGTGACGAAAAGTTTCAGTACCTTGATACTAAGAAATTGCTCAATCACCGGTCAAATTCCTTCTTACATTGGAGATATGTCATCATTAGAGAACATAGACTTGAGCTTCAACAGGTTAACGGGTAGAATCCCAGATTCTTTGAAAAACTTAAATGTAACTTATATGTCTTTTTCAAACAATATGCTTTCTGGGAAAATTCCTCATTGGATTCAAAATGCAGTATGGAGTAAGATGGATTTTTCATACAATAATTTTTCAAAGCTAACCTTTAAACCGTCACCCAATCTACAAGTGAATTTGTTTTCCTGCTGCTGCAACTCCTCAACTTGTCTGCCAAATTCGACAGACACAATCAAGGAGAAGTATTGTCCCCGAAAACCTAAGCACCATTCATTGTTCATAAATTGTGGCGGTGGGGAAACACGTGGTGCTGATGGAAATCTTTATGATCAAGATAATGATACGTTACTATATTACCAGAGTCCAAAAGGAAACTGGGCTCGGAGTAGCGTTGGAAACAGCTACGACTATGTTTCCGATGGCAATTCTAGTAAATTGTTAAAAAGCGTTAGTTGTGGGCTTTCATCTGAAGCACGTTTATACGATACAGCTCGCATTTCCCTTGTCTCTTTAAAATATTACGGGTTCTGTTTACGTAAAGGCAAATACCGTGTAGCACTTCACTTTGCTGAGATTGTTGATGAGGTTACAGATATTCATGAGGATATTGATTTTAGAGGTACAGATAAACGCACATTTGATGTATATATTCAGGGTAAGAGACGACTAAAGGATTTCAACATTATAGACAATGCAGGAGGTCCGAATAAAGAATATATAAAAAATTTCACGCATGTTTATGTAAACGATAGTACATTAGAGATCCACTTCTACTCTCGATCGGCTGGAGAAGGGACACTTGATGGACCTCTCATATCTGCTATAACCGTAACTCCAGAGTACAAGCAACAACTATCTCCTTTGCAAACAGCGCTCATTACTGTGGCTTCAAGCATAGTTTTCTTGTTGCTTTTATTACTTTTTGCCTGGATGATGGGATGGTTGGGGAATACAGATCACTTACAAGAAATAGATATAGGTATAGAAAAGCCTGTCACCCTCAAACAATTAAAAGATGCTACTCGGAATTTTAGCAAGAGGAATGAGATTGCTCAAGGGGGTTTTGGGACCGTTTACAAGGCTGAAGTGCAAGGGAAAATTGTAGCCGTGAAGAAACTTTGCTCTCATTGCGAGGAAAGGATCAATGAGTTCATAAATGAATTTTATACCTTAAAAGCAATGAGTCAAGAGAACCTTGTTCAGTTGCTGGACATTTACAACGCAAAAGGCCTGCATTTGCTCATCTATGAATATATGGAGAACAACTCCCTTGCACATGCCTTATTTGACTCAAAGTCCAAATTGAAACTTGACTGGGAAGTTAGGTTTAACATTTGCCTGGGAATAGCTAGGGGATTGGAGTATCTACATGAGCATCCCAGGATGAAGATAGTTCACAGCGACATTAAATCCACTAATATTCTTCTCGATGGAAACCTTAAGGCTAAAATATCAGACTTTGGATTGGCAAGACTTTACACCGAAGATGATCAATTCAAGTTCATCAAAGTAGAAGTGCCACAAGGATATATGGCACCTGAGTATGTTCGAGGAATTGTGACATCTAAAGCTGATGTCTACAGTTTTGGGGTGGTTATACTTGAAACTGTTAGTGGAAGGACAAATGCAGGAGACAGGCGAGATAGCCAGGAAAGTGAATTTCTTCTAGACACGGCTTATGATTTACATCGGAAAGGAAGGTTGGTGGACTTGGTTGACAAAACCTTGTCCAACAAGTATGATGCAAAACAAGCCATAATCATTTTGAATTTAGCAGTAAAGTGCACCAATATATCTCCAACTCTGAGGCCTACTATGTCTGAAGTAGTGAGTGTTCTCGTTGGCGACAAAAAAATTGAGGAGATTTGTACTCCTGCTCTTAGTGATAGTCACCTTGCTCAAGTTGATTCCTCTGTTTCTATGGAAGCAACCTCGAGAGCATCCACATCATCCAATTTGATCAAAGCGGAAGATGAAACAGAACACATTTCTGAGAGTACCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1073

Amino Acids

119.56

Weight (kDa)

5.96

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 240 - 323 4.3e-07 Leucine-rich repeat region
LRR_8 PF13855 247 - 306 1.6e-06 Leucine rich repeat
Malectin PF11721 496 - 680 1.8e-28 Malectin domain
Pkinase PF00069 750 - 1015 3e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 752 - 1018 5.6e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 44
Acc36I ACCTGC 2 cut(s) 322, 1012
AccB1I GGYRCC 2 cut(s) 254, 2749
AccBSI CCGCTC 1 cut(s) 213
AccI GTMKAC 1 cut(s) 2793
AciI CCGC 6 cut(s) 213, 418, 436, 689, 1506, 3182
AcuI CTGAAG 3 cut(s) 1704, 2319, 3057
AcvI CACGTG 1 cut(s) 1520
AdeI CACNNNGTG 1 cut(s) 1523
AfaI GTAC 8 cut(s) 344, 781, 1114, 1837, 1969, 2057, 3085, 3214
AfeI AGCGCT 1 cut(s) 2088
AfiI CCNNNNNNNGG 2 cut(s) 442, 507
AflII CTTAAG 2 cut(s) 566, 2654
AflIII ACRYGT 1 cut(s) 1517
AgeI ACCGGT 1 cut(s) 1142
AhdI GACNNNNNGTC 1 cut(s) 2509
AjnI CCWGG 4 cut(s) 2141, 2553, 2594, 2862
AjuI GAANNNNNNNTTGG 2 cut(s) 2900, 2932
Alw21I GWGCWC 2 cut(s) 733, 3002
Alw26I GTCTC 5 cut(s) 16, 526, 1726, 1870, 2841
Alw44I GTGCAC 2 cut(s) 729, 2998
AlwNI CAGNNNCTG 1 cut(s) 2422
Ama87I CYCGRG 1 cut(s) 3148
Aor51HI AGCGCT 1 cut(s) 2088
AoxI GGCC 5 cut(s) 377, 635, 922, 2443, 3023
ApaI GGGCCC 1 cut(s) 381
ApaLI GTGCAC 2 cut(s) 729, 2998
ApeKI GCWGC 3 cut(s) 438, 1404, 1407
AseI ATTAAT 1 cut(s) 177
AsiGI ACCGGT 1 cut(s) 1142
Asp700I GAANNNNTTC 2 cut(s) 1106, 2877
AspLEI GCGC 1 cut(s) 2089
AspS9I GGNCC 7 cut(s) 377, 378, 635, 923, 1916, 2021, 2283
AsuC2I CCSGG 1 cut(s) 376
AsuHPI GGTGA 4 cut(s) 1132, 1365, 2203, 3098
AsuII TTCGAA 1 cut(s) 456
AsuNHI GCTAGC 1 cut(s) 317
AvaI CYCGRG 1 cut(s) 3148
AvaII GGWCC 3 cut(s) 1916, 2021, 2283
BaeGI GKGCMC 4 cut(s) 189, 381, 733, 3002
BamHI GGATCC 1 cut(s) 488
BanI GGYRCC 2 cut(s) 254, 2749
BanII GRGCYC 2 cut(s) 381, 1597
BbrPI CACGTG 1 cut(s) 1520
Bbv12I GWGCWC 2 cut(s) 733, 3002
BbvI GCAGC 3 cut(s) 450, 1391, 1394
BceAI ACGGC 4 cut(s) 268, 721, 2306, 2904
BciT130I CCWGG 4 cut(s) 2143, 2555, 2596, 2864
BclI TGATCA 3 cut(s) 1543, 2704, 3174
BcnI CCSGG 1 cut(s) 376
BcoDI GTCTC 5 cut(s) 16, 526, 1726, 1870, 2841
BfaI CTAG 7 cut(s) 318, 797, 1031, 1644, 2565, 2882, 3220
BfmI CTRYAG 2 cut(s) 238, 2794
BfoI RGCGCY 1 cut(s) 2090
BfrI CTTAAG 2 cut(s) 566, 2654
BfuAI ACCTGC 2 cut(s) 322, 1012
BisI GCNGC 3 cut(s) 439, 1405, 1408
BlsI GCNGC 3 cut(s) 440, 1406, 1409
Bme1390I CCNGG 5 cut(s) 376, 2143, 2555, 2596, 2864
Bme18I GGWCC 3 cut(s) 1916, 2021, 2283
BmeRI GACNNNNNGTC 1 cut(s) 2509
BmeT110I CYCGRG 1 cut(s) 3148
BmgT120I GGNCC 7 cut(s) 377, 378, 635, 923, 1916, 2021, 2283
BmiI GGNNCC 6 cut(s) 7, 256, 379, 490, 2284, 2751
BmrFI CCNGG 5 cut(s) 376, 2143, 2555, 2596, 2864
BmrI ACTGGG 3 cut(s) 858, 1600, 2539
BmsI GCATC 8 cut(s) 234, 535, 542, 728, 2221, 2599, 2947, 3164
BmtI GCTAGC 1 cut(s) 321
BmuI ACTGGG 3 cut(s) 858, 1600, 2539
BplI GAGNNNNNCTC 4 cut(s) 91, 123, 2465, 2497
BpmI CTGGAG 2 cut(s) 2022, 2034
Bpu10I CCTNAGC 2 cut(s) 652, 1476
Bpu14I TTCGAA 1 cut(s) 456
BpuEI CTTGAG 3 cut(s) 1216, 2253, 3099
BpuMI CCSGG 1 cut(s) 376
BsaAI YACGTR 2 cut(s) 1520, 1751
BsaBI GATNNNNATC 4 cut(s) 177, 765, 1533, 2901
BsaJI CCNNGG 2 cut(s) 2554, 2594
BsaWI WCCGGW 2 cut(s) 776, 1142
BsaXI ACNNNNNCTCC 2 cut(s) 2032, 2062
Bsc4I CCNNNNNNNGG 2 cut(s) 442, 507
Bse118I RCCGGY 1 cut(s) 1142
Bse1I ACTGG 8 cut(s) 307, 465, 756, 853, 953, 1075, 1595, 2534
Bse3DI GCAATG 3 cut(s) 1050, 2341, 2400
Bse8I GATNNNNATC 4 cut(s) 177, 765, 1533, 2901
BseBI CCWGG 4 cut(s) 2143, 2555, 2596, 2864
BseDI CCNNGG 2 cut(s) 2554, 2594
BseGI GGATG 7 cut(s) 523, 2151, 2159, 2590, 2604, 3155, 3164
BseJI GATNNNNATC 4 cut(s) 177, 765, 1533, 2901
BseLI CCNNNNNNNGG 2 cut(s) 442, 507
BseMI GCAATG 3 cut(s) 1050, 2341, 2400
BseMII CTCAG 5 cut(s) 86, 1776, 2745, 3011, 3198
BseNI ACTGG 8 cut(s) 307, 465, 756, 853, 953, 1075, 1595, 2534
BseRI GAGGAG 2 cut(s) 1405, 3089
BseSI GKGCMC 4 cut(s) 189, 381, 733, 3002
BseXI GCAGC 3 cut(s) 450, 1391, 1394
Bsh1285I CGRYCG 2 cut(s) 217, 1997
BshFI GGCC 5 cut(s) 379, 637, 924, 2445, 3025
BshNI GGYRCC 2 cut(s) 254, 2749
BshTI ACCGGT 1 cut(s) 1142
BsiEI CGRYCG 2 cut(s) 217, 1997
BsiHKAI GWGCWC 2 cut(s) 733, 3002
BsiHKCI CYCGRG 1 cut(s) 3148
BsiSI CCGG 4 cut(s) 375, 777, 1008, 1143
BslFI GGGAC 4 cut(s) 865, 1449, 2023, 2296
BslI CCNNNNNNNGG 2 cut(s) 442, 507
BsmAI GTCTC 5 cut(s) 16, 526, 1726, 1870, 2841
BsmBI CGTCTC 1 cut(s) 1870
BsmFI GGGAC 4 cut(s) 865, 1449, 2023, 2296
BsnI GGCC 5 cut(s) 379, 637, 924, 2445, 3025
BsoBI CYCGRG 1 cut(s) 3148
Bsp119I TTCGAA 1 cut(s) 456
Bsp120I GGGCCC 1 cut(s) 377
Bsp1286I GDGCHC 5 cut(s) 189, 381, 733, 1597, 3002
Bsp1407I TGTACA 1 cut(s) 342
BspACI CCGC 6 cut(s) 213, 418, 436, 689, 1506, 3182
BspANI GGCC 5 cut(s) 379, 637, 924, 2445, 3025
BspCNI CTCAG 5 cut(s) 85, 1777, 2746, 3012, 3199
BspHI TCATGA 1 cut(s) 1813
BspLI GGNNCC 6 cut(s) 7, 256, 379, 490, 2284, 2751
BspMAI CTGCAG 1 cut(s) 242
BspMI ACCTGC 2 cut(s) 322, 1012
BspOI GCTAGC 1 cut(s) 321
BspT104I TTCGAA 1 cut(s) 456
BspT107I GGYRCC 2 cut(s) 254, 2749
BspTI CTTAAG 2 cut(s) 566, 2654
BsrBI CCGCTC 1 cut(s) 213
BsrDI GCAATG 3 cut(s) 1050, 2341, 2400
BsrFI RCCGGY 1 cut(s) 1142
BsrGI TGTACA 1 cut(s) 342
BsrI ACTGG 8 cut(s) 307, 465, 756, 853, 953, 1075, 1595, 2534
BssAI RCCGGY 1 cut(s) 1142
BssECI CCNNGG 2 cut(s) 2554, 2594
Bst2UI CCWGG 4 cut(s) 2143, 2555, 2596, 2864
Bst4CI ACNGT 7 cut(s) 1371, 1766, 2044, 2098, 2287, 2798, 2824
Bst6I CTCTTC 2 cut(s) 62, 563
BstAFI CTTAAG 2 cut(s) 566, 2654
BstAPI GCANNNNNTGC 1 cut(s) 261
BstAUI TGTACA 1 cut(s) 342
BstBAI YACGTR 2 cut(s) 1520, 1751
BstBI TTCGAA 1 cut(s) 456
BstC8I GCNNGC 4 cut(s) 319, 874, 1708, 2447
BstF5I GGATG 7 cut(s) 523, 2151, 2159, 2590, 2604, 3155, 3164
BstH2I RGCGCY 1 cut(s) 2090
BstHHI GCGC 1 cut(s) 2089
BstMAI GTCTC 5 cut(s) 16, 526, 1726, 1870, 2841
BstMCI CGRYCG 2 cut(s) 217, 1997
BstMWI GCNNNNNNNGC 5 cut(s) 210, 261, 2086, 2343, 2966
BstNI CCWGG 4 cut(s) 2143, 2555, 2596, 2864
BstNSI RCATGY 2 cut(s) 1952, 2495
BstSCI CCNGG 5 cut(s) 374, 2141, 2553, 2594, 2862
BstSFI CTRYAG 2 cut(s) 238, 2794
BstSLI GKGCMC 4 cut(s) 189, 381, 733, 3002
BstSNI TACGTA 1 cut(s) 1751
BstV1I GCAGC 3 cut(s) 450, 1391, 1394
BstX2I RGATCY 6 cut(s) 280, 463, 488, 610, 833, 1977
BstYI RGATCY 6 cut(s) 280, 463, 488, 610, 833, 1977
BsuRI GGCC 5 cut(s) 379, 637, 924, 2445, 3025
BtsCI GGATG 7 cut(s) 523, 2151, 2159, 2590, 2604, 3155, 3164
BtsIMutI CAGTG 2 cut(s) 731, 846
BveI ACCTGC 2 cut(s) 322, 1012
Cac8I GCNNGC 4 cut(s) 319, 874, 1708, 2447
CaiI CAGNNNCTG 1 cut(s) 2422
CciI TCATGA 1 cut(s) 1813
CfoI GCGC 1 cut(s) 2089
Cfr10I RCCGGY 1 cut(s) 1142
Cfr13I GGNCC 7 cut(s) 377, 378, 635, 923, 1916, 2021, 2283
Csp6I GTAC 8 cut(s) 343, 780, 1113, 1836, 1968, 2056, 3084, 3213
CspAI ACCGGT 1 cut(s) 1142
CviAII CATG 8 cut(s) 266, 421, 442, 607, 1814, 1949, 2492, 2585
CviQI GTAC 8 cut(s) 343, 780, 1113, 1836, 1968, 2056, 3084, 3213
DraI TTTAAA 2 cut(s) 1366, 1728
DraIII CACNNNGTG 1 cut(s) 1523
DriI GACNNNNNGTC 1 cut(s) 2509
Eam1104I CTCTTC 2 cut(s) 62, 563
Eam1105I GACNNNNNGTC 1 cut(s) 2509
EarI CTCTTC 2 cut(s) 62, 563
EciI GGCGGA 1 cut(s) 704
Eco105I TACGTA 1 cut(s) 1751
Eco147I AGGCCT 2 cut(s) 2445, 3025
Eco24I GRGCYC 2 cut(s) 381, 1597
Eco47I GGWCC 3 cut(s) 1916, 2021, 2283
Eco47III AGCGCT 1 cut(s) 2088
Eco57I CTGAAG 3 cut(s) 1704, 2319, 3057
Eco72I CACGTG 1 cut(s) 1520
Eco88I CYCGRG 1 cut(s) 3148
EcoRI GAATTC 1 cut(s) 86
EcoRII CCWGG 4 cut(s) 2141, 2553, 2594, 2862
EcoT22I ATGCAT 1 cut(s) 895
EcoT38I GRGCYC 2 cut(s) 381, 1597
Esp3I CGTCTC 1 cut(s) 1870
FaeI CATG 8 cut(s) 269, 424, 445, 610, 1817, 1952, 2495, 2588
FalI AAGNNNNNCTT 6 cut(s) 1346, 1378, 1998, 2030, 2394, 2426
FaqI GGGAC 4 cut(s) 865, 1449, 2023, 2296
FatI CATG 8 cut(s) 265, 420, 441, 606, 1813, 1948, 2491, 2584
FauI CCCGC 1 cut(s) 443
FauNDI CATATG 1 cut(s) 1093
FbaI TGATCA 3 cut(s) 1543, 2704, 3174
FblI GTMKAC 1 cut(s) 2793
Fnu4HI GCNGC 3 cut(s) 439, 1405, 1408
FokI GGATG 7 cut(s) 530, 2158, 2166, 2577, 2611, 3142, 3151
FriOI GRGCYC 2 cut(s) 381, 1597
Fsp4HI GCNGC 3 cut(s) 439, 1405, 1408
FspBI CTAG 7 cut(s) 318, 797, 1031, 1644, 2565, 2882, 3220
GlaI GCGC 1 cut(s) 2088
GluI GCNGC 3 cut(s) 439, 1405, 1408
GsuI CTGGAG 2 cut(s) 2022, 2034
HaeII RGCGCY 1 cut(s) 2090
HaeIII GGCC 5 cut(s) 379, 637, 924, 2445, 3025
HapII CCGG 4 cut(s) 375, 777, 1008, 1143
HhaI GCGC 1 cut(s) 2089
Hin1II CATG 8 cut(s) 269, 424, 445, 610, 1817, 1952, 2495, 2588
Hin6I GCGC 1 cut(s) 2087
HinP1I GCGC 1 cut(s) 2087
HincII GTYRAC 3 cut(s) 592, 1212, 2932
HindII GTYRAC 3 cut(s) 592, 1212, 2932
HindIII AAGCTT 2 cut(s) 12, 563
HpaI GTTAAC 2 cut(s) 592, 1212
HpaII CCGG 4 cut(s) 375, 777, 1008, 1143
HphI GGTGA 4 cut(s) 1132, 1365, 2203, 3098
HpyAV CCTTC 4 cut(s) 1164, 2000, 2826, 2907
HpyCH4III ACNGT 7 cut(s) 1371, 1766, 2044, 2098, 2287, 2798, 2824
HpyCH4IV ACGT 4 cut(s) 1519, 1559, 1690, 1750
HpyF10VI GCNNNNNNNGC 5 cut(s) 210, 261, 2086, 2343, 2966
HpySE526I ACGT 4 cut(s) 1519, 1559, 1690, 1750
Hsp92II CATG 8 cut(s) 269, 424, 445, 610, 1817, 1952, 2495, 2588
HspAI GCGC 1 cut(s) 2087
Ksp22I TGATCA 3 cut(s) 1543, 2704, 3174
KspAI GTTAAC 2 cut(s) 592, 1212
Lsp1109I GCAGC 3 cut(s) 450, 1391, 1394
LweI GCATC 8 cut(s) 234, 535, 542, 728, 2221, 2599, 2947, 3164
MaeI CTAG 7 cut(s) 318, 797, 1031, 1644, 2565, 2882, 3220
MaeII ACGT 4 cut(s) 1519, 1559, 1690, 1750
MbiI CCGCTC 1 cut(s) 213
MfeI CAATTG 2 cut(s) 296, 368
MflI RGATCY 6 cut(s) 280, 463, 488, 610, 833, 1977
MhlI GDGCHC 5 cut(s) 189, 381, 733, 1597, 3002
MlyI GAGTC 5 cut(s) 549, 1058, 1585, 2407, 2498
MmeI TCCRAC 5 cut(s) 141, 811, 1588, 2970, 3038
Mph1103I ATGCAT 1 cut(s) 895
MroXI GAANNNNTTC 2 cut(s) 1106, 2877
MslI CAYNNNNRTG 3 cut(s) 275, 1953, 2096
MspCI CTTAAG 2 cut(s) 566, 2654
MspI CCGG 4 cut(s) 375, 777, 1008, 1143
MspR9I CCNGG 5 cut(s) 376, 2143, 2555, 2596, 2864
MunI CAATTG 2 cut(s) 296, 368
MvaI CCWGG 4 cut(s) 2143, 2555, 2596, 2864
MwoI GCNNNNNNNGC 5 cut(s) 210, 261, 2086, 2343, 2966
NciI CCSGG 1 cut(s) 376
NdeI CATATG 1 cut(s) 1093
NheI GCTAGC 1 cut(s) 317
NlaIII CATG 8 cut(s) 269, 424, 445, 610, 1817, 1952, 2495, 2588
NlaIV GGNNCC 6 cut(s) 7, 256, 379, 490, 2284, 2751
NmuCI GTSAC 7 cut(s) 130, 268, 1096, 1371, 2209, 2773, 3104
NsiI ATGCAT 1 cut(s) 895
NspI RCATGY 2 cut(s) 1952, 2495
NspV TTCGAA 1 cut(s) 456
PaeR7I CTCGAG 1 cut(s) 3148
PagI TCATGA 1 cut(s) 1813
PceI AGGCCT 2 cut(s) 2445, 3025
PdmI GAANNNNTTC 2 cut(s) 1106, 2877
PfeI GAWTC 7 cut(s) 292, 352, 771, 1221, 1229, 1303, 3122
PinAI ACCGGT 1 cut(s) 1142
PkrI GCNGC 3 cut(s) 440, 1406, 1409
Ple19I CGATCG 1 cut(s) 1997
PleI GAGTC 5 cut(s) 549, 1058, 1584, 2406, 2498
PmaCI CACGTG 1 cut(s) 1520
PmlI CACGTG 1 cut(s) 1520
PpsI GAGTC 5 cut(s) 549, 1058, 1584, 2406, 2498
Ppu21I YACGTR 2 cut(s) 1520, 1751
PshBI ATTAAT 1 cut(s) 177
PsiI TTATAA 1 cut(s) 44
Psp6I CCWGG 4 cut(s) 2141, 2553, 2594, 2862
PspCI CACGTG 1 cut(s) 1520
PspGI CCWGG 4 cut(s) 2141, 2553, 2594, 2862
PspN4I GGNNCC 6 cut(s) 7, 256, 379, 490, 2284, 2751
PspOMI GGGCCC 1 cut(s) 377
PspPI GGNCC 7 cut(s) 377, 378, 635, 923, 1916, 2021, 2283
PsrI GAACNNNNNNTAC 2 cut(s) 3033, 3065
PstI CTGCAG 1 cut(s) 242
PstNI CAGNNNCTG 1 cut(s) 2422
PsuI RGATCY 6 cut(s) 280, 463, 488, 610, 833, 1977
PvuI CGATCG 1 cut(s) 1997
RsaI GTAC 8 cut(s) 344, 781, 1114, 1837, 1969, 2057, 3085, 3214
RsaNI GTAC 8 cut(s) 343, 780, 1113, 1836, 1968, 2056, 3084, 3213
RseI CAYNNNNRTG 3 cut(s) 275, 1953, 2096
SatI GCNGC 3 cut(s) 439, 1405, 1408
Sau96I GGNCC 7 cut(s) 377, 378, 635, 923, 1916, 2021, 2283
SchI GAGTC 5 cut(s) 549, 1058, 1585, 2407, 2498
ScrFI CCNGG 5 cut(s) 376, 2143, 2555, 2596, 2864
SduI GDGCHC 5 cut(s) 189, 381, 733, 1597, 3002
SfaNI GCATC 8 cut(s) 234, 535, 542, 728, 2221, 2599, 2947, 3164
SfcI CTRYAG 2 cut(s) 238, 2794
Sfr274I CTCGAG 1 cut(s) 3148
SfuI TTCGAA 1 cut(s) 456
SinI GGWCC 3 cut(s) 1916, 2021, 2283
SlaI CTCGAG 1 cut(s) 3148
SmiMI CAYNNNNRTG 3 cut(s) 275, 1953, 2096
SmlI CTYRAG 6 cut(s) 566, 1195, 2268, 2654, 3114, 3148
SmoI CTYRAG 6 cut(s) 566, 1195, 2268, 2654, 3114, 3148
SnaBI TACGTA 1 cut(s) 1751
SseBI AGGCCT 2 cut(s) 2445, 3025
SsiI CCGC 6 cut(s) 213, 418, 436, 689, 1506, 3182
SspI AATATT 2 cut(s) 1733, 2635
SspMI CTAG 7 cut(s) 318, 797, 1031, 1644, 2565, 2882, 3220
StuI AGGCCT 2 cut(s) 2445, 3025
StyD4I CCNGG 5 cut(s) 374, 2141, 2553, 2594, 2862
TaaI ACNGT 7 cut(s) 1371, 1766, 2044, 2098, 2287, 2798, 2824
TaiI ACGT 4 cut(s) 1522, 1562, 1693, 1753
TaqI TCGA 9 cut(s) 181, 456, 769, 960, 1436, 1993, 2643, 2764, 3149
TatI WGTACW 4 cut(s) 342, 1967, 2055, 3083
TfiI GAWTC 7 cut(s) 292, 352, 771, 1221, 1229, 1303, 3122
TscAI CASTG 2 cut(s) 738, 853
TseFI GTSAC 7 cut(s) 130, 268, 1096, 1371, 2209, 2773, 3104
TseI GCWGC 3 cut(s) 438, 1404, 1407
Tsp45I GTSAC 7 cut(s) 130, 268, 1096, 1371, 2209, 2773, 3104
TspGWI ACGGA 1 cut(s) 993
TspRI CASTG 2 cut(s) 738, 853
Vha464I CTTAAG 2 cut(s) 566, 2654
VneI GTGCAC 2 cut(s) 729, 2998
VpaK11BI GGWCC 3 cut(s) 1916, 2021, 2283
VspI ATTAAT 1 cut(s) 177
XbaI TCTAGA 2 cut(s) 1030, 2881
XceI RCATGY 2 cut(s) 1952, 2495
XcmI CCANNNNNNNNNTGG 1 cut(s) 1587
XhoI CTCGAG 1 cut(s) 3148
XmiI GTMKAC 1 cut(s) 2793
XmnI GAANNNNTTC 2 cut(s) 1106, 2877
XspI CTAG 7 cut(s) 318, 797, 1031, 1644, 2565, 2882, 3220
Zsp2I ATGCAT 1 cut(s) 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.