RchiOBHm_Chr5g0001261

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000236
Physical Location & Seq
Reverse (-)
677953 .. 679747
1795 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28271

Sequence Viewer

Length: 213 bp
ATGGGTACTGAAGCTTCAGCAAGACTTGTTAGTGAACTTGTAATTCTATGCCTCATCTCTACTCTTTGTCTGCAGCTTGGTTCTGAATTCAAATATCAGAGTATAGCTGAAACGTTGCCCGAGTTGGCCACAGAAGAAGGTAATTTATCATCCACTTCATATCTTTTTCTTAAAACCAAACACCGTGCTAGAAAAGTCCGTACAAAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.8

Weight (kDa)

7.79

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 113
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 2 cut(s) 7, 202
AgsI TTSAA 1 cut(s) 91
AluBI AGCT 3 cut(s) 14, 76, 107
AluI AGCT 3 cut(s) 14, 76, 107
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 73
ApoI RAATTY 1 cut(s) 86
AvaI CYCGRG 1 cut(s) 119
BalI TGGCCA 1 cut(s) 128
BarI GAAGNNNNNNTAC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 85
BfaI CTAG 1 cut(s) 189
BfmI CTRYAG 1 cut(s) 71
BisI GCNGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 75
BmeT110I CYCGRG 1 cut(s) 119
BseGI GGATG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 85
BshFI GGCC 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 119
BsnI GGCC 1 cut(s) 128
BsoBI CYCGRG 1 cut(s) 119
BspANI GGCC 1 cut(s) 128
BspMAI CTGCAG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 185
BstF5I GGATG 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 85
BsuRI GGCC 1 cut(s) 128
BtsCI GGATG 1 cut(s) 149
Csp6I GTAC 2 cut(s) 6, 201
CviJI RGCY 4 cut(s) 14, 76, 107, 128
CviKI_1 RGCY 4 cut(s) 14, 76, 107, 128
CviQI GTAC 2 cut(s) 6, 201
EaeI YGGCCR 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 30
Eco88I CYCGRG 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 86
FaiI YATR 3 cut(s) 49, 104, 160
Fnu4HI GCNGC 1 cut(s) 74
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 1 cut(s) 74
FspBI CTAG 1 cut(s) 189
GluI GCNGC 1 cut(s) 74
HaeIII GGCC 1 cut(s) 128
HindIII AAGCTT 1 cut(s) 12
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 2 cut(s) 85, 99
Hpy8I GTNNAC 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 1 cut(s) 73
HpySE526I ACGT 1 cut(s) 113
Lsp1109I GCAGC 1 cut(s) 85
MaeI CTAG 1 cut(s) 189
MaeII ACGT 1 cut(s) 113
MboII GAAGA 1 cut(s) 146
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 3 cut(s) 42, 86, 142
MluNI TGGCCA 1 cut(s) 128
MnlI CCTC 1 cut(s) 62
Mox20I TGGCCA 1 cut(s) 128
MscI TGGCCA 1 cut(s) 128
MseI TTAA 1 cut(s) 171
Msp20I TGGCCA 1 cut(s) 128
PkrI GCNGC 1 cut(s) 75
Psp1406I AACGTT 1 cut(s) 113
PstI CTGCAG 1 cut(s) 75
RsaI GTAC 2 cut(s) 7, 202
RsaNI GTAC 2 cut(s) 6, 201
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 74
SetI ASST 5 cut(s) 16, 78, 109, 116, 142
SfcI CTRYAG 1 cut(s) 71
SgeI CNNG 8 cut(s) 33, 38, 50, 89, 131, 133, 197, 201
Sse9I AATT 3 cut(s) 42, 86, 142
SspMI CTAG 1 cut(s) 189
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 1 cut(s) 116
TasI AATT 3 cut(s) 42, 86, 142
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseI GCWGC 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 147
TspGWI ACGGA 1 cut(s) 188
XapI RAATTY 1 cut(s) 86
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.