Rw5G000870

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000236
Physical Location & Seq
Reverse (-)
653782 .. 664513
10732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G000870.1

Sequence Viewer

Length: 1221 bp
ATGGGTACTGAAGCTTCAGCAAGAGTTGTCAGCTGGTCTCTTATGCTTCTATGCCTCATCTTTACTCTTCGTCAGCTTGGTTCTGAATTCAAATATCAGAGTATAGCTCAAACGTTGCCCACGTTGCCTGATGAAGAAGAAATAGATATAGGTCTAGAAAAGCCTGTCACCCTCAAACAATTAAAAGATGCTACTCGGAATTTTAGTAAGAGGAATGAGATTGGTCAAGGGAGTTTTGGGATCGTTTACCGGGCTGAAGTGCAAGGGAAAATTGTAGCTGTGAAGAAACTTTCCTCTCATTCAGAGGAAATGATCAATCAGTTGAAAAATGAGTTTTATACCTTAAAATCAATGAGTCAAGAGAACCTTGTTCAGTTGCTGGACATTTACAACGCAAAAGGCCTGCATTTGCTCATCTATGAATATATGCAAAACAAGTCCCTTGCATGCGCCTTATTTGACTCAGAGTCAAAACTGAAACTTAATTGGGAAGCTAGGTTTAACATTTGCTTGGGAGTAGCTAGGGGATTGGTGTATCTACATGAGCATCCCAGGCTGAAGATGGTTCACAGGGACATTAAATCAGCTAATATTCTTCTCGATGGAAACCTCAAGGCTAAAATATCAGACTTTGGATTGGCAAGCCTTTACACCGAAGATGATCAATTCAAGTTCATCAAAGTAGAAGTGCCGCAGGGATATATGGCACCTGAGTATGTTCGAGGAATTGTGACATCTAAAGCTGATGTCTACAGTTTTGGGGTGGTTATACTTGAAACTGTTAGTGGAAGGACAAATGCAGGACACAGGCGAGATAGCCAGGAAAGTGAATTTCTTTTAGACACGGCTTATGATTTACAGCAAAAAGGAAGGCTGGTGGACTTGGTTGACAAAACCTTGTCTACCAAGTATGATGCAAAACAAGCCATCATCATCTTGAATTTAGCAGTAAAGTGCACCAGTATATCCCCAACTCTGAGGCCTACTATGTCTGAAGTTGTGAGTGTTCTCGTTGGCGACAAAAAAATTGAGGAGATTTGTCCCCCTGCTCTGAATGATAGTCATATTGCTCACGTTGATTCCTCTGTTTCTATGGAAGTAACCTCGGGAGCATCCACATCATCTAATGTGATCAAAGGGGAAGATGAAACAGAACATATTTCTGAGATAAGCCCCTTATCTATCAGAATGAAACAGAGTAATCTAACCAAATGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

406

Amino Acids

45.36

Weight (kDa)

6.19

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 69 - 334 3.6e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 71 - 337 7e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 706
AccI GTMKAC 2 cut(s) 750, 902
AciI CCGC 1 cut(s) 692
AclI AACGTT 1 cut(s) 113
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 4 cut(s) 86, 199, 830, 940
AcuI CTGAAG 4 cut(s) 30, 276, 578, 1014
AfaI GTAC 1 cut(s) 7
AgsI TTSAA 5 cut(s) 91, 325, 670, 776, 940
AhdI GACNNNNNGTC 1 cut(s) 466
AjnI CCWGG 2 cut(s) 551, 819
AluBI AGCT 9 cut(s) 14, 33, 76, 107, 278, 494, 521, 587, 743
AluI AGCT 9 cut(s) 14, 33, 76, 107, 278, 494, 521, 587, 743
Alw21I GWGCWC 1 cut(s) 959
Alw26I GTCTC 1 cut(s) 42
Alw44I GTGCAC 1 cut(s) 955
AlwI GGATC 1 cut(s) 248
AlwNI CAGNNNCTG 1 cut(s) 379
Ama87I CYCGRG 1 cut(s) 1105
AoxI GGCC 2 cut(s) 400, 980
ApaLI GTGCAC 1 cut(s) 955
ApoI RAATTY 4 cut(s) 86, 199, 830, 940
AspLEI GCGC 1 cut(s) 452
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 1 cut(s) 160
AvaI CYCGRG 1 cut(s) 1105
BaeGI GKGCMC 1 cut(s) 959
BanI GGYRCC 1 cut(s) 706
BarI GAAGNNNNNNTAC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 959
BccI CCATC 3 cut(s) 556, 596, 935
BceAI ACGGC 1 cut(s) 861
BciT130I CCWGG 2 cut(s) 553, 821
BclI TGATCA 3 cut(s) 312, 661, 1131
BcnI CCSGG 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 3 cut(s) 155, 495, 522
BfmI CTRYAG 1 cut(s) 751
BisI GCNGC 1 cut(s) 692
BlsI GCNGC 1 cut(s) 693
Bme1390I CCNGG 3 cut(s) 251, 553, 821
BmeRI GACNNNNNGTC 1 cut(s) 466
BmeT110I CYCGRG 1 cut(s) 1105
BmiI GGNNCC 1 cut(s) 708
BmrFI CCNGG 3 cut(s) 251, 553, 821
BmsI GCATC 4 cut(s) 178, 556, 904, 1121
BplI GAGNNNNNCTC 2 cut(s) 91, 123
BpuEI CTTGAG 1 cut(s) 596
BpuMI CCSGG 1 cut(s) 251
BsaI GGTCTC 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 551, 1104
Bse1I ACTGG 1 cut(s) 960
BseBI CCWGG 2 cut(s) 553, 821
BseDI CCNNGG 2 cut(s) 551, 1104
BseGI GGATG 2 cut(s) 547, 1112
BseMII CTCAG 4 cut(s) 477, 702, 968, 1155
BseNI ACTGG 1 cut(s) 960
BseRI GAGGAG 1 cut(s) 1046
BseSI GKGCMC 1 cut(s) 959
BshFI GGCC 2 cut(s) 402, 982
BshNI GGYRCC 1 cut(s) 706
BsiHKAI GWGCWC 1 cut(s) 959
BsiHKCI CYCGRG 1 cut(s) 1105
BsiSI CCGG 1 cut(s) 250
BslFI GGGAC 3 cut(s) 424, 587, 1026
BsmAI GTCTC 1 cut(s) 42
BsmFI GGGAC 3 cut(s) 424, 587, 1026
BsnI GGCC 2 cut(s) 402, 982
Bso31I GGTCTC 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 1105
Bsp1286I GDGCHC 1 cut(s) 959
Bsp143I GATC 4 cut(s) 240, 312, 661, 1131
BspACI CCGC 1 cut(s) 692
BspANI GGCC 2 cut(s) 402, 982
BspCNI CTCAG 4 cut(s) 476, 703, 969, 1156
BspLI GGNNCC 1 cut(s) 708
BspPI GGATC 1 cut(s) 248
BspT107I GGYRCC 1 cut(s) 706
BspTNI GGTCTC 1 cut(s) 42
BsrI ACTGG 1 cut(s) 960
BssECI CCNNGG 2 cut(s) 551, 1104
BssMI GATC 4 cut(s) 240, 312, 661, 1131
Bst2UI CCWGG 2 cut(s) 553, 821
Bst4CI ACNGT 2 cut(s) 755, 781
Bst6I CTCTTC 1 cut(s) 72
BstC8I GCNNGC 3 cut(s) 404, 448, 643
BstDEI CTNAG 4 cut(s) 463, 711, 977, 1164
BstF5I GGATG 2 cut(s) 547, 1112
BstHHI GCGC 1 cut(s) 452
BstKTI GATC 4 cut(s) 243, 315, 664, 1134
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 4 cut(s) 240, 312, 661, 1131
BstMWI GCNNNNNNNGC 3 cut(s) 124, 553, 923
BstNI CCWGG 2 cut(s) 553, 821
BstNSI RCATGY 1 cut(s) 450
BstSCI CCNGG 3 cut(s) 249, 551, 819
BstSFI CTRYAG 1 cut(s) 751
BstSLI GKGCMC 1 cut(s) 959
BsuRI GGCC 2 cut(s) 402, 982
BtsCI GGATG 2 cut(s) 547, 1112
Cac8I GCNNGC 3 cut(s) 404, 448, 643
CaiI CAGNNNCTG 1 cut(s) 379
CfoI GCGC 1 cut(s) 452
Csp6I GTAC 1 cut(s) 6
CviAII CATG 2 cut(s) 447, 542
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 4 cut(s) 463, 711, 977, 1164
DpnI GATC 4 cut(s) 242, 314, 663, 1133
DpnII GATC 4 cut(s) 240, 312, 661, 1131
DriI GACNNNNNGTC 1 cut(s) 466
Eam1104I CTCTTC 1 cut(s) 72
Eam1105I GACNNNNNGTC 1 cut(s) 466
EarI CTCTTC 1 cut(s) 72
Eco147I AGGCCT 2 cut(s) 402, 982
Eco31I GGTCTC 1 cut(s) 42
Eco57I CTGAAG 4 cut(s) 30, 276, 578, 1014
Eco88I CYCGRG 1 cut(s) 1105
EcoRI GAATTC 1 cut(s) 86
EcoRII CCWGG 2 cut(s) 551, 819
FaeI CATG 2 cut(s) 450, 545
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FaqI GGGAC 3 cut(s) 424, 587, 1026
FatI CATG 2 cut(s) 446, 541
FbaI TGATCA 3 cut(s) 312, 661, 1131
FblI GTMKAC 2 cut(s) 750, 902
Fnu4HI GCNGC 1 cut(s) 692
FokI GGATG 2 cut(s) 534, 1099
Fsp4HI GCNGC 1 cut(s) 692
FspBI CTAG 3 cut(s) 155, 495, 522
GlaI GCGC 1 cut(s) 451
GluI GCNGC 1 cut(s) 692
HaeIII GGCC 2 cut(s) 402, 982
HapII CCGG 1 cut(s) 250
HhaI GCGC 1 cut(s) 452
Hin1II CATG 2 cut(s) 450, 545
Hin6I GCGC 1 cut(s) 450
HinP1I GCGC 1 cut(s) 450
HincII GTYRAC 1 cut(s) 889
HindII GTYRAC 1 cut(s) 889
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 4 cut(s) 355, 461, 467, 1079
HpaII CCGG 1 cut(s) 250
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 7 cut(s) 247, 568, 751, 880, 889, 903, 957
Hpy188III TCNNGA 5 cut(s) 155, 359, 599, 937, 1107
Hpy8I GTNNAC 7 cut(s) 247, 568, 751, 880, 889, 903, 957
HpyAV CCTTC 2 cut(s) 783, 864
HpyCH4III ACNGT 2 cut(s) 755, 781
HpyCH4IV ACGT 3 cut(s) 113, 122, 1074
HpyCH4V TGCA 7 cut(s) 262, 406, 430, 446, 800, 917, 957
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 553, 923
HpyF3I CTNAG 4 cut(s) 463, 711, 977, 1164
HpySE526I ACGT 3 cut(s) 113, 122, 1074
Hsp92II CATG 2 cut(s) 450, 545
HspAI GCGC 1 cut(s) 450
Ksp22I TGATCA 3 cut(s) 312, 661, 1131
Kzo9I GATC 4 cut(s) 240, 312, 661, 1131
LmnI GCTCC 1 cut(s) 1109
LweI GCATC 4 cut(s) 178, 556, 904, 1121
MaeI CTAG 3 cut(s) 155, 495, 522
MaeII ACGT 3 cut(s) 113, 122, 1074
MaeIII GTNAC 3 cut(s) 166, 730, 1099
MalI GATC 4 cut(s) 242, 314, 663, 1133
MboI GATC 4 cut(s) 240, 312, 661, 1131
MboII GAAGA 8 cut(s) 59, 146, 149, 295, 571, 587, 668, 1154
MhlI GDGCHC 1 cut(s) 959
MlyI GAGTC 3 cut(s) 364, 455, 476
MseI TTAA 5 cut(s) 182, 344, 483, 501, 579
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 1 cut(s) 250
MspR9I CCNGG 3 cut(s) 251, 553, 821
MvaI CCWGG 2 cut(s) 553, 821
MwoI GCNNNNNNNGC 3 cut(s) 124, 553, 923
NciI CCSGG 1 cut(s) 251
NdeII GATC 4 cut(s) 240, 312, 661, 1131
NlaIII CATG 2 cut(s) 450, 545
NlaIV GGNNCC 1 cut(s) 708
NmuCI GTSAC 2 cut(s) 166, 730
NspI RCATGY 1 cut(s) 450
PaeI GCATGC 1 cut(s) 450
PceI AGGCCT 2 cut(s) 402, 982
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PfeI GAWTC 1 cut(s) 1079
PkrI GCNGC 1 cut(s) 693
PleI GAGTC 3 cut(s) 363, 455, 475
PpsI GAGTC 3 cut(s) 363, 455, 475
Psp1406I AACGTT 1 cut(s) 113
Psp6I CCWGG 2 cut(s) 551, 819
PspGI CCWGG 2 cut(s) 551, 819
PspN4I GGNNCC 1 cut(s) 708
PstNI CAGNNNCTG 1 cut(s) 379
PvuII CAGCTG 1 cut(s) 33
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SaqAI TTAA 5 cut(s) 182, 344, 483, 501, 579
SatI GCNGC 1 cut(s) 692
Sau3AI GATC 4 cut(s) 240, 312, 661, 1131
SchI GAGTC 3 cut(s) 364, 455, 476
ScrFI CCNGG 3 cut(s) 251, 553, 821
SduI GDGCHC 1 cut(s) 959
SfaNI GCATC 4 cut(s) 178, 556, 904, 1121
SfcI CTRYAG 1 cut(s) 751
SmlI CTYRAG 1 cut(s) 611
SmoI CTYRAG 1 cut(s) 611
SphI GCATGC 1 cut(s) 450
SseBI AGGCCT 2 cut(s) 402, 982
SsiI CCGC 1 cut(s) 692
SspI AATATT 1 cut(s) 592
SspMI CTAG 3 cut(s) 155, 495, 522
StuI AGGCCT 2 cut(s) 402, 982
StyD4I CCNGG 3 cut(s) 249, 551, 819
TaaI ACNGT 2 cut(s) 755, 781
TaiI ACGT 3 cut(s) 116, 125, 1077
TaqI TCGA 2 cut(s) 600, 721
TauI GCSGC 1 cut(s) 694
TfiI GAWTC 1 cut(s) 1079
Tru1I TTAA 5 cut(s) 182, 344, 483, 501, 579
Tru9I TTAA 5 cut(s) 182, 344, 483, 501, 579
TseFI GTSAC 2 cut(s) 166, 730
Tsp45I GTSAC 2 cut(s) 166, 730
TspDTI ATGAA 5 cut(s) 147, 435, 664, 1161, 1205
VneI GTGCAC 1 cut(s) 955
XapI RAATTY 4 cut(s) 86, 199, 830, 940
XbaI TCTAGA 1 cut(s) 154
XceI RCATGY 1 cut(s) 450
XcmI CCANNNNNNNNNTGG 1 cut(s) 559
XmiI GTMKAC 2 cut(s) 750, 902
XspI CTAG 3 cut(s) 155, 495, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.