Rh4CG040900

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
8255131 .. 8255541
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG040900.1

Sequence Viewer

Length: 411 bp
ATGCTTTTACGCCTTATTTTATTCAATTATGCAATAATCTCATTTAACACAATGTGTATGTTGTGTGTGGAAATGCAGGCTTATGATTTACATCGGAAAGGAAGGTTGGTGGACTTGGTTGACAAAACCTTGTCCAACAAGTATGATGCAAAACAAGCCATAATCATTTTGAATTTAGCAGTAAAGTGCACCAATATATCTCCAACTCTGAGGCCTACTATGTCTGAAGTAGTGAGTGTTCTCGTTGGCGACAAAAAAATTGAGGAGATTTGTACTCCTGCTCTTAGTGATAGTCACCTTGCTCAAGTTGATTCCTCTGTTTCTATGGAAGCAACCTCGAGAGCATCCACATCATCCAATTTGATCAAAGCGGAAGATGAAACAGAACACATTTCTGAGAGTACCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

15.04

Weight (kDa)

5.3

Isoelectric Point (pI)

57.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 371
AcsI RAATTY 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 246
AdeI CACNNNGTG 1 cut(s) 54
AfaI GTAC 2 cut(s) 274, 403
AgsI TTSAA 2 cut(s) 25, 172
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
Alw21I GWGCWC 1 cut(s) 191
Alw44I GTGCAC 1 cut(s) 187
Ama87I CYCGRG 1 cut(s) 337
AoxI GGCC 1 cut(s) 212
ApaLI GTGCAC 1 cut(s) 187
ApoI RAATTY 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 287
AvaI CYCGRG 1 cut(s) 337
BaeGI GKGCMC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 191
BclI TGATCA 1 cut(s) 363
BfaI CTAG 1 cut(s) 409
BmeT110I CYCGRG 1 cut(s) 337
BmsI GCATC 2 cut(s) 136, 353
BpuEI CTTGAG 1 cut(s) 288
BsaBI GATNNNNATC 1 cut(s) 90
Bse8I GATNNNNATC 1 cut(s) 90
BseGI GGATG 2 cut(s) 344, 353
BseJI GATNNNNATC 1 cut(s) 90
BseMII CTCAG 2 cut(s) 200, 387
BseRI GAGGAG 1 cut(s) 278
BseSI GKGCMC 1 cut(s) 191
BshFI GGCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 191
BsiHKCI CYCGRG 1 cut(s) 337
BsnI GGCC 1 cut(s) 214
BsoBI CYCGRG 1 cut(s) 337
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 1 cut(s) 363
BspACI CCGC 1 cut(s) 371
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 2 cut(s) 201, 388
BssMI GATC 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 3 cut(s) 209, 284, 396
BstF5I GGATG 2 cut(s) 344, 353
BstKTI GATC 1 cut(s) 366
BstMBI GATC 1 cut(s) 363
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstSLI GKGCMC 1 cut(s) 191
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 2 cut(s) 344, 353
Cac8I GCNNGC 1 cut(s) 78
Csp6I GTAC 2 cut(s) 273, 402
CviJI RGCY 3 cut(s) 80, 158, 214
CviKI_1 RGCY 3 cut(s) 80, 158, 214
CviQI GTAC 2 cut(s) 273, 402
DdeI CTNAG 3 cut(s) 209, 284, 396
DpnI GATC 1 cut(s) 365
DpnII GATC 1 cut(s) 363
DraIII CACNNNGTG 1 cut(s) 54
Eco147I AGGCCT 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 337
FaiI YATR 8 cut(s) 30, 59, 84, 144, 161, 197, 221, 326
FbaI TGATCA 1 cut(s) 363
FokI GGATG 2 cut(s) 331, 340
FspBI CTAG 1 cut(s) 409
HaeIII GGCC 1 cut(s) 214
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 1 cut(s) 311
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 3 cut(s) 112, 121, 189
Hpy188I TCNGA 4 cut(s) 96, 210, 226, 397
Hpy188III TCNNGA 1 cut(s) 339
Hpy8I GTNNAC 3 cut(s) 112, 121, 189
HpyAV CCTTC 1 cut(s) 96
HpyCH4V TGCA 4 cut(s) 32, 76, 149, 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 3 cut(s) 209, 284, 396
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 1 cut(s) 363
LpnPI CCDG 2 cut(s) 62, 291
LweI GCATC 2 cut(s) 136, 353
MaeI CTAG 1 cut(s) 409
MaeIII GTNAC 1 cut(s) 293
MalI GATC 1 cut(s) 365
MboI GATC 1 cut(s) 363
MboII GAAGA 1 cut(s) 386
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 4 cut(s) 25, 172, 258, 358
MmeI TCCRAC 2 cut(s) 159, 227
MnlI CCTC 4 cut(s) 204, 256, 325, 346
MseI TTAA 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 1 cut(s) 363
NmuCI GTSAC 1 cut(s) 293
PaeR7I CTCGAG 1 cut(s) 337
PceI AGGCCT 1 cut(s) 214
PfeI GAWTC 1 cut(s) 311
PsrI GAACNNNNNNTAC 2 cut(s) 222, 254
RsaI GTAC 2 cut(s) 274, 403
RsaNI GTAC 2 cut(s) 273, 402
SaqAI TTAA 1 cut(s) 45
Sau3AI GATC 1 cut(s) 363
SduI GDGCHC 1 cut(s) 191
SetI ASST 4 cut(s) 107, 131, 300, 338
SfaNI GCATC 2 cut(s) 136, 353
Sfr274I CTCGAG 1 cut(s) 337
SlaI CTCGAG 1 cut(s) 337
SmlI CTYRAG 2 cut(s) 303, 337
SmoI CTYRAG 2 cut(s) 303, 337
Sse9I AATT 4 cut(s) 25, 172, 258, 358
SseBI AGGCCT 1 cut(s) 214
SsiI CCGC 1 cut(s) 371
SspMI CTAG 1 cut(s) 409
StuI AGGCCT 1 cut(s) 214
TaqI TCGA 1 cut(s) 338
TasI AATT 4 cut(s) 25, 172, 258, 358
TatI WGTACW 1 cut(s) 272
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseFI GTSAC 1 cut(s) 293
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 393
VneI GTGCAC 1 cut(s) 187
XapI RAATTY 1 cut(s) 172
XhoI CTCGAG 1 cut(s) 337
XspI CTAG 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.