Rmu_sc0001706.1_g000032

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001706.1
OG0000236
Physical Location & Seq
Forward (+)
130587 .. 135349
4763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001706.1_g000032.1.cds

Sequence Viewer

Length: 777 bp
atgatcgcagactcaaagtcaaaactgaaacttgattgggaagctaggtttaacatttgcttgggaatagctaagggattggtgtatctacatgagcatcccaggctgaagatggttcacagggacattaaatcagccaatattcttctcgatggaaacctcaaggctaaaatatcagactttggattggcaagcctttacaccgaagatgatcaattcaagttcatcaaagtagaagtgccacagggatatatggcacctgagtatgttcgaggaattgtgacatctaaagctgatgtctacagttttggggtggttatacttgaaactgttagtggaaggacaaatgcaggacacaggcgagatagccaggaaagtgaatttcttttagacacggcttatgatttacaacagaaaggaaggctgctggacttggttgacaaaacattgtctaccaagtatgatgcaaaacaagccatcatcatcttgaatttagcagtaaagtgcaccagtatatccccaactctgaggcctactatgtttgaagttgacgagaccgacaactacaagatcaaggccgagctctggttcgactccgccacagcctacgccccttcccgaattgaagtgatatgggttttaccgcgatctcatcttgtacgtattaggctggtagtggagctgcggttgtgtgatttggggcattctttcatcaaagctggccaggtgggattcagacatcaacttgtatttcaatatctagagatggggctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

258

Amino Acids

29.34

Weight (kDa)

8.31

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 256
AccI GTMKAC 2 cut(s) 300, 452
AccII CGCG 1 cut(s) 646
AciI CCGC 3 cut(s) 597, 644, 685
AcoI YGGCCR 1 cut(s) 721
AcsI RAATTY 2 cut(s) 380, 490
AcuI CTGAAG 1 cut(s) 128
AfaI GTAC 1 cut(s) 660
AfiI CCNNNNNNNGG 1 cut(s) 585
AgsI TTSAA 6 cut(s) 220, 326, 490, 545, 626, 755
AhdI GACNNNNNGTC 1 cut(s) 16
AjnI CCWGG 3 cut(s) 101, 369, 723
AluBI AGCT 6 cut(s) 44, 71, 293, 583, 682, 719
AluI AGCT 6 cut(s) 44, 71, 293, 583, 682, 719
Alw21I GWGCWC 2 cut(s) 509, 585
Alw26I GTCTC 1 cut(s) 548
Alw44I GTGCAC 1 cut(s) 505
AoxI GGCC 3 cut(s) 530, 576, 721
ApaLI GTGCAC 1 cut(s) 505
ApeKI GCWGC 2 cut(s) 424, 682
ApoI RAATTY 2 cut(s) 380, 490
BaeGI GKGCMC 1 cut(s) 509
BalI TGGCCA 1 cut(s) 723
BanI GGYRCC 1 cut(s) 256
BanII GRGCYC 2 cut(s) 585, 774
Bbv12I GWGCWC 2 cut(s) 509, 585
BbvI GCAGC 2 cut(s) 411, 669
BccI CCATC 4 cut(s) 106, 146, 485, 760
BceAI ACGGC 1 cut(s) 411
BciT130I CCWGG 3 cut(s) 103, 371, 725
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 548
BfaI CTAG 2 cut(s) 45, 761
BfmI CTRYAG 1 cut(s) 301
BisI GCNGC 2 cut(s) 425, 683
BlsI GCNGC 2 cut(s) 426, 684
Bme1390I CCNGG 3 cut(s) 103, 371, 725
BmeRI GACNNNNNGTC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 3 cut(s) 103, 371, 725
BmsI GCATC 2 cut(s) 106, 454
Bpu10I CCTNAGC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 146
BsaAI YACGTR 1 cut(s) 662
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 671, 701
Bsc4I CCNNNNNNNGG 1 cut(s) 585
Bse1I ACTGG 1 cut(s) 510
BseBI CCWGG 3 cut(s) 103, 371, 725
BseDI CCNNGG 1 cut(s) 101
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 1 cut(s) 585
BseMII CTCAG 2 cut(s) 252, 518
BseNI ACTGG 1 cut(s) 510
BseSI GKGCMC 1 cut(s) 509
BseXI GCAGC 2 cut(s) 411, 669
Bsh1236I CGCG 1 cut(s) 646
BshFI GGCC 3 cut(s) 532, 578, 723
BshNI GGYRCC 1 cut(s) 256
BsiHKAI GWGCWC 2 cut(s) 509, 585
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 585
BsmAI GTCTC 1 cut(s) 548
BsmFI GGGAC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 3 cut(s) 532, 578, 723
Bso31I GGTCTC 1 cut(s) 548
Bsp1286I GDGCHC 3 cut(s) 509, 585, 774
Bsp143I GATC 4 cut(s) 3, 211, 570, 647
BspACI CCGC 3 cut(s) 597, 644, 685
BspANI GGCC 3 cut(s) 532, 578, 723
BspCNI CTCAG 2 cut(s) 253, 519
BspFNI CGCG 1 cut(s) 646
BspLI GGNNCC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 256
BspTNI GGTCTC 1 cut(s) 548
BsrI ACTGG 1 cut(s) 510
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 4 cut(s) 3, 211, 570, 647
Bst2UI CCWGG 3 cut(s) 103, 371, 725
Bst4CI ACNGT 2 cut(s) 305, 331
BstBAI YACGTR 1 cut(s) 662
BstC8I GCNNGC 2 cut(s) 193, 721
BstDEI CTNAG 3 cut(s) 72, 261, 527
BstF5I GGATG 1 cut(s) 97
BstFNI CGCG 1 cut(s) 646
BstKTI GATC 4 cut(s) 6, 214, 573, 650
BstMAI GTCTC 1 cut(s) 548
BstMBI GATC 4 cut(s) 3, 211, 570, 647
BstMWI GCNNNNNNNGC 2 cut(s) 103, 473
BstNI CCWGG 3 cut(s) 103, 371, 725
BstSCI CCNGG 3 cut(s) 101, 369, 723
BstSFI CTRYAG 1 cut(s) 301
BstSLI GKGCMC 1 cut(s) 509
BstSNI TACGTA 1 cut(s) 662
BstUI CGCG 1 cut(s) 646
BstV1I GCAGC 2 cut(s) 411, 669
BsuRI GGCC 3 cut(s) 532, 578, 723
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 2 cut(s) 193, 721
Csp6I GTAC 1 cut(s) 659
CviAII CATG 1 cut(s) 92
CviQI GTAC 1 cut(s) 659
DdeI CTNAG 3 cut(s) 72, 261, 527
DpnI GATC 4 cut(s) 5, 213, 572, 649
DpnII GATC 4 cut(s) 3, 211, 570, 647
DriI GACNNNNNGTC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 721
Eam1105I GACNNNNNGTC 1 cut(s) 16
EciI GGCGGA 1 cut(s) 586
Ecl136II GAGCTC 1 cut(s) 583
Eco105I TACGTA 1 cut(s) 662
Eco147I AGGCCT 1 cut(s) 532
Eco24I GRGCYC 2 cut(s) 585, 774
Eco31I GGTCTC 1 cut(s) 548
Eco53kI GAGCTC 1 cut(s) 583
Eco57I CTGAAG 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 583
EcoRII CCWGG 3 cut(s) 101, 369, 723
EcoT38I GRGCYC 2 cut(s) 585, 774
FaeI CATG 1 cut(s) 95
FaqI GGGAC 1 cut(s) 137
FatI CATG 1 cut(s) 91
FbaI TGATCA 1 cut(s) 211
FblI GTMKAC 2 cut(s) 300, 452
Fnu4HI GCNGC 2 cut(s) 425, 683
FokI GGATG 1 cut(s) 84
FriOI GRGCYC 2 cut(s) 585, 774
Fsp4HI GCNGC 2 cut(s) 425, 683
FspBI CTAG 2 cut(s) 45, 761
GluI GCNGC 2 cut(s) 425, 683
HaeIII GGCC 3 cut(s) 532, 578, 723
Hin1II CATG 1 cut(s) 95
HincII GTYRAC 2 cut(s) 439, 550
HindII GTYRAC 2 cut(s) 439, 550
HinfI GANTC 3 cut(s) 11, 593, 732
Hpy166II GTNNAC 6 cut(s) 118, 301, 439, 453, 507, 550
Hpy188I TCNGA 4 cut(s) 178, 528, 737, 776
Hpy188III TCNNGA 4 cut(s) 149, 487, 618, 761
Hpy8I GTNNAC 6 cut(s) 118, 301, 439, 453, 507, 550
HpyAV CCTTC 3 cut(s) 333, 414, 624
HpyCH4III ACNGT 2 cut(s) 305, 331
HpyCH4IV ACGT 1 cut(s) 661
HpyCH4V TGCA 3 cut(s) 350, 467, 507
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 473
HpyF3I CTNAG 3 cut(s) 72, 261, 527
HpySE526I ACGT 1 cut(s) 661
Hsp92II CATG 1 cut(s) 95
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 4 cut(s) 3, 211, 570, 647
LmnI GCTCC 1 cut(s) 679
Lsp1109I GCAGC 2 cut(s) 411, 669
LweI GCATC 2 cut(s) 106, 454
MaeI CTAG 2 cut(s) 45, 761
MaeII ACGT 1 cut(s) 661
MaeIII GTNAC 1 cut(s) 280
MalI GATC 4 cut(s) 5, 213, 572, 649
MboI GATC 4 cut(s) 3, 211, 570, 647
MboII GAAGA 3 cut(s) 121, 137, 218
MhlI GDGCHC 3 cut(s) 509, 585, 774
MlsI TGGCCA 1 cut(s) 723
MluCI AATT 5 cut(s) 215, 276, 380, 490, 621
MluNI TGGCCA 1 cut(s) 723
MlyI GAGTC 2 cut(s) 5, 587
MnlI CCTC 3 cut(s) 170, 266, 522
Mox20I TGGCCA 1 cut(s) 723
MscI TGGCCA 1 cut(s) 723
MseI TTAA 2 cut(s) 51, 129
Msp20I TGGCCA 1 cut(s) 723
MspR9I CCNGG 3 cut(s) 103, 371, 725
Mva1269I GAATGC 1 cut(s) 703
MvaI CCWGG 3 cut(s) 103, 371, 725
MvnI CGCG 1 cut(s) 646
MwoI GCNNNNNNNGC 2 cut(s) 103, 473
NdeII GATC 4 cut(s) 3, 211, 570, 647
NlaIII CATG 1 cut(s) 95
NlaIV GGNNCC 1 cut(s) 258
NmeAIII GCCGAG 1 cut(s) 604
NmuCI GTSAC 1 cut(s) 280
PceI AGGCCT 1 cut(s) 532
PctI GAATGC 1 cut(s) 703
PfeI GAWTC 1 cut(s) 732
PkrI GCNGC 2 cut(s) 426, 684
PleI GAGTC 2 cut(s) 5, 587
PpsI GAGTC 2 cut(s) 5, 587
Ppu21I YACGTR 1 cut(s) 662
Psp124BI GAGCTC 1 cut(s) 585
Psp6I CCWGG 3 cut(s) 101, 369, 723
PspGI CCWGG 3 cut(s) 101, 369, 723
PspN4I GGNNCC 1 cut(s) 258
RsaI GTAC 1 cut(s) 660
RsaNI GTAC 1 cut(s) 659
SacI GAGCTC 1 cut(s) 585
SaqAI TTAA 2 cut(s) 51, 129
SatI GCNGC 2 cut(s) 425, 683
Sau3AI GATC 4 cut(s) 3, 211, 570, 647
SchI GAGTC 2 cut(s) 5, 587
ScrFI CCNGG 3 cut(s) 103, 371, 725
SduI GDGCHC 3 cut(s) 509, 585, 774
SfaNI GCATC 2 cut(s) 106, 454
SfcI CTRYAG 1 cut(s) 301
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
SnaBI TACGTA 1 cut(s) 662
Sse9I AATT 5 cut(s) 215, 276, 380, 490, 621
SseBI AGGCCT 1 cut(s) 532
SsiI CCGC 3 cut(s) 597, 644, 685
SspI AATATT 1 cut(s) 142
SspMI CTAG 2 cut(s) 45, 761
SstI GAGCTC 1 cut(s) 585
StuI AGGCCT 1 cut(s) 532
StyD4I CCNGG 3 cut(s) 101, 369, 723
TaaI ACNGT 2 cut(s) 305, 331
TaiI ACGT 1 cut(s) 664
TaqI TCGA 3 cut(s) 150, 271, 591
TaqII GACCGA 1 cut(s) 572
TasI AATT 5 cut(s) 215, 276, 380, 490, 621
TfiI GAWTC 1 cut(s) 732
Tru1I TTAA 2 cut(s) 51, 129
Tru9I TTAA 2 cut(s) 51, 129
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 2 cut(s) 424, 682
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 2 cut(s) 214, 700
VneI GTGCAC 1 cut(s) 505
XapI RAATTY 2 cut(s) 380, 490
XbaI TCTAGA 1 cut(s) 760
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XmiI GTMKAC 2 cut(s) 300, 452
XspI CTAG 2 cut(s) 45, 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.