Rroxscaffold_1G00075080

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000236
Physical Location & Seq
Forward (+)
95841091 .. 95844051
2961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00075080.1

Sequence Viewer

Length: 861 bp
ATGGTTCACAGAGACATTAAATCAGCTAATATTCTTCTCGATGGAAACCTCAAGGCTAAAATATCAGACTTTGGATTGGCAAGCCTTTACACCGAAGATGATCAATTCAAGTTCATCAAAGTAGAAGTGCCACAGGGATATATGGCACCTGAGTATGTTCGAGGAGTTGTGACAGCTAAAGCTGATGTCTACAGTTTTGGGGTGGTTATACTTGAAACTGTTAGTGGAAGGAAAAATGCAGGACACACGCGAGATAGCCAGGAAAGTGAATTTCTTTTAGACACGGCTTGTGATTTACAGCGAAAAGGAAAACTGGTGGACTTGGTTGATAAAACCTTGTATAACAAGTATGATGCAAAACAAGCCATCATCATCTTGAATTTAGCAGTAATGTGCATAAATATATCGCCAACTCTGAGGCCTACTATGTCTGAAGTTTTGAGTGTTCTCGTTGGCGACAAAAAAATTGAGGAGATTTGTTCCCCTGCCCTGAAGGAGCCGATTAAGGACATCAACGACCCCCACGTGAATGAGATCGCGGAGTTCGCGGTGTCGGAGTACAACAAGAAATCCGGGAAGAAGCTGAAGTTACGGAGTGTGGTGAAGGGCGAGACTCAGGTTGTCGCAGGTGAGAATTACCGGCTCGTCATCGTCGTTGAGGATAACTCGGCGGCGGCCAAGTATGAGGGCGTTGTGTACGAGAGGATTTGGGAGCATACTAGGGAATTGCTCTCCTTCGATAGTCAAATTGCTCAAGTTGATTCCACTGTTTCTATGGAAGTAACCTCGAAAGCATCCACGTCATCCAATTTGATCAAAGTGGAAGATGAAACAGAACACATTTCTGAGAGTACCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

286

Amino Acids

31.78

Weight (kDa)

5.23

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 149 5.4e-19 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 2 - 148 3.7e-21 Protein kinase domain
Cystatin PF00031 167 - 225 3e-13 Cystatin domain
SQAPI PF16845 168 - 247 8.5e-32 Aspartic acid proteinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 617
Acc36I ACCTGC 1 cut(s) 617
AccB1I GGYRCC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 189
AccII CGCG 3 cut(s) 250, 539, 548
AciI CCGC 4 cut(s) 539, 548, 671, 674
AcoI YGGCCR 1 cut(s) 675
AcsI RAATTY 2 cut(s) 269, 379
AcuI CTGAAG 3 cut(s) 453, 512, 605
AcvI CACGTG 1 cut(s) 526
AfaI GTAC 3 cut(s) 560, 698, 853
AgsI TTSAA 3 cut(s) 109, 215, 379
AjiI CACGTC 1 cut(s) 801
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 4 cut(s) 26, 176, 182, 583
AluI AGCT 4 cut(s) 26, 176, 182, 583
Alw26I GTCTC 2 cut(s) 6, 605
AoxI GGCC 2 cut(s) 419, 675
ApoI RAATTY 2 cut(s) 269, 379
AsuC2I CCSGG 1 cut(s) 574
AsuHPI GGTGA 2 cut(s) 613, 641
BanI GGYRCC 1 cut(s) 145
BbrPI CACGTG 1 cut(s) 526
BccI CCATC 2 cut(s) 35, 374
BceAI ACGGC 1 cut(s) 300
BciT130I CCWGG 1 cut(s) 260
BclI TGATCA 2 cut(s) 100, 813
BcnI CCSGG 1 cut(s) 574
BcoDI GTCTC 2 cut(s) 6, 605
BfaI CTAG 2 cut(s) 720, 859
BfmI CTRYAG 1 cut(s) 190
BfuAI ACCTGC 1 cut(s) 617
BisI GCNGC 2 cut(s) 672, 675
BlsI GCNGC 2 cut(s) 673, 676
Bme1390I CCNGG 2 cut(s) 260, 574
BmgBI CACGTC 1 cut(s) 801
BmiI GGNNCC 2 cut(s) 147, 498
BmrFI CCNGG 2 cut(s) 260, 574
BmsI GCATC 2 cut(s) 343, 803
BplI GAGNNNNNCTC 2 cut(s) 650, 682
BpuEI CTTGAG 2 cut(s) 35, 738
BpuMI CCSGG 1 cut(s) 574
BsaAI YACGTR 1 cut(s) 526
Bse118I RCCGGY 1 cut(s) 639
Bse1I ACTGG 1 cut(s) 318
BseBI CCWGG 1 cut(s) 260
BseGI GGATG 2 cut(s) 794, 803
BseMII CTCAG 4 cut(s) 141, 407, 629, 837
BseNI ACTGG 1 cut(s) 318
BseRI GAGGAG 2 cut(s) 177, 485
Bsh1236I CGCG 3 cut(s) 250, 539, 548
BshFI GGCC 2 cut(s) 421, 677
BshNI GGYRCC 1 cut(s) 145
BsiSI CCGG 2 cut(s) 573, 640
BsmAI GTCTC 2 cut(s) 6, 605
BsnI GGCC 2 cut(s) 421, 677
Bsp143I GATC 3 cut(s) 100, 534, 813
BspACI CCGC 4 cut(s) 539, 548, 671, 674
BspANI GGCC 2 cut(s) 421, 677
BspCNI CTCAG 4 cut(s) 142, 408, 628, 838
BspFNI CGCG 3 cut(s) 250, 539, 548
BspLI GGNNCC 2 cut(s) 147, 498
BspMI ACCTGC 1 cut(s) 617
BspT107I GGYRCC 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 639
BsrI ACTGG 1 cut(s) 318
BssAI RCCGGY 1 cut(s) 639
BssMI GATC 3 cut(s) 100, 534, 813
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 3 cut(s) 194, 220, 769
BstBAI YACGTR 1 cut(s) 526
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 4 cut(s) 150, 416, 615, 846
BstF5I GGATG 2 cut(s) 794, 803
BstFNI CGCG 3 cut(s) 250, 539, 548
BstKTI GATC 3 cut(s) 103, 537, 816
BstMAI GTCTC 2 cut(s) 6, 605
BstMBI GATC 3 cut(s) 100, 534, 813
BstMWI GCNNNNNNNGC 2 cut(s) 362, 545
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 2 cut(s) 258, 572
BstSFI CTRYAG 1 cut(s) 190
BstUI CGCG 3 cut(s) 250, 539, 548
BsuRI GGCC 2 cut(s) 421, 677
BtrI CACGTC 1 cut(s) 801
BtsCI GGATG 2 cut(s) 794, 803
BtsIMutI CAGTG 1 cut(s) 765
BveI ACCTGC 1 cut(s) 617
Cac8I GCNNGC 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 639
Csp6I GTAC 3 cut(s) 559, 697, 852
CviQI GTAC 3 cut(s) 559, 697, 852
DdeI CTNAG 4 cut(s) 150, 416, 615, 846
DpnI GATC 3 cut(s) 102, 536, 815
DpnII GATC 3 cut(s) 100, 534, 813
EaeI YGGCCR 1 cut(s) 675
Eco147I AGGCCT 1 cut(s) 421
Eco57I CTGAAG 3 cut(s) 453, 512, 605
Eco72I CACGTG 1 cut(s) 526
EcoRII CCWGG 1 cut(s) 258
FbaI TGATCA 2 cut(s) 100, 813
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 672, 675
FokI GGATG 2 cut(s) 781, 790
Fsp4HI GCNGC 2 cut(s) 672, 675
FspBI CTAG 2 cut(s) 720, 859
GluI GCNGC 2 cut(s) 672, 675
HaeIII GGCC 2 cut(s) 421, 677
HapII CCGG 2 cut(s) 573, 640
HinfI GANTC 2 cut(s) 613, 761
HpaII CCGG 2 cut(s) 573, 640
HphI GGTGA 2 cut(s) 613, 641
Hpy166II GTNNAC 4 cut(s) 7, 190, 319, 697
Hpy188I TCNGA 5 cut(s) 67, 417, 433, 556, 847
Hpy188III TCNNGA 2 cut(s) 38, 376
Hpy8I GTNNAC 4 cut(s) 7, 190, 319, 697
Hpy99I CGWCG 1 cut(s) 656
HpyAV CCTTC 4 cut(s) 222, 487, 598, 745
HpyCH4III ACNGT 3 cut(s) 194, 220, 769
HpyCH4IV ACGT 2 cut(s) 525, 800
HpyCH4V TGCA 3 cut(s) 239, 356, 396
HpyF10VI GCNNNNNNNGC 2 cut(s) 362, 545
HpyF3I CTNAG 4 cut(s) 150, 416, 615, 846
HpySE526I ACGT 2 cut(s) 525, 800
Ksp22I TGATCA 2 cut(s) 100, 813
Kzo9I GATC 3 cut(s) 100, 534, 813
LmnI GCTCC 2 cut(s) 496, 712
LweI GCATC 2 cut(s) 343, 803
MaeI CTAG 2 cut(s) 720, 859
MaeII ACGT 2 cut(s) 525, 800
MaeIII GTNAC 3 cut(s) 169, 588, 781
MalI GATC 3 cut(s) 102, 536, 815
MboI GATC 3 cut(s) 100, 534, 813
MboII GAAGA 4 cut(s) 26, 107, 589, 836
MluCI AATT 8 cut(s) 104, 269, 379, 465, 634, 725, 747, 808
MlyI GAGTC 1 cut(s) 607
MmeI TCCRAC 1 cut(s) 534
MnlI CCTC 8 cut(s) 59, 155, 411, 463, 652, 679, 696, 796
MseI TTAA 2 cut(s) 18, 504
MslI CAYNNNNRTG 1 cut(s) 528
MspI CCGG 2 cut(s) 573, 640
MspR9I CCNGG 2 cut(s) 260, 574
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 3 cut(s) 250, 539, 548
MwoI GCNNNNNNNGC 2 cut(s) 362, 545
NciI CCSGG 1 cut(s) 574
NdeII GATC 3 cut(s) 100, 534, 813
NlaIV GGNNCC 2 cut(s) 147, 498
NmeAIII GCCGAG 1 cut(s) 647
NmuCI GTSAC 1 cut(s) 169
PaqCI CACCTGC 1 cut(s) 617
PceI AGGCCT 1 cut(s) 421
PcsI WCGNNNNNNNCGW 2 cut(s) 522, 651
PfeI GAWTC 1 cut(s) 761
PfoI TCCNGGA 1 cut(s) 572
PkrI GCNGC 2 cut(s) 673, 676
PleI GAGTC 1 cut(s) 607
PmaCI CACGTG 1 cut(s) 526
PmlI CACGTG 1 cut(s) 526
PpsI GAGTC 1 cut(s) 607
Ppu21I YACGTR 1 cut(s) 526
Psp6I CCWGG 1 cut(s) 258
PspCI CACGTG 1 cut(s) 526
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 2 cut(s) 147, 498
RsaI GTAC 3 cut(s) 560, 698, 853
RsaNI GTAC 3 cut(s) 559, 697, 852
RseI CAYNNNNRTG 1 cut(s) 528
SaqAI TTAA 2 cut(s) 18, 504
SatI GCNGC 2 cut(s) 672, 675
Sau3AI GATC 3 cut(s) 100, 534, 813
SchI GAGTC 1 cut(s) 607
ScrFI CCNGG 2 cut(s) 260, 574
SfaNI GCATC 2 cut(s) 343, 803
SfcI CTRYAG 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 528
SmlI CTYRAG 2 cut(s) 50, 753
SmoI CTYRAG 2 cut(s) 50, 753
Sse9I AATT 8 cut(s) 104, 269, 379, 465, 634, 725, 747, 808
SseBI AGGCCT 1 cut(s) 421
SsiI CCGC 4 cut(s) 539, 548, 671, 674
SspI AATATT 1 cut(s) 31
SspMI CTAG 2 cut(s) 720, 859
StuI AGGCCT 1 cut(s) 421
StyD4I CCNGG 2 cut(s) 258, 572
TaaI ACNGT 3 cut(s) 194, 220, 769
TaiI ACGT 2 cut(s) 528, 803
TaqI TCGA 4 cut(s) 39, 160, 738, 788
TasI AATT 8 cut(s) 104, 269, 379, 465, 634, 725, 747, 808
TatI WGTACW 1 cut(s) 558
TauI GCSGC 2 cut(s) 674, 677
TfiI GAWTC 1 cut(s) 761
Tru1I TTAA 2 cut(s) 18, 504
Tru9I TTAA 2 cut(s) 18, 504
TscAI CASTG 1 cut(s) 772
TseFI GTSAC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 2 cut(s) 103, 843
TspGWI ACGGA 1 cut(s) 607
TspRI CASTG 1 cut(s) 772
XapI RAATTY 2 cut(s) 269, 379
XcmI CCANNNNNNNNNTGG 1 cut(s) 772
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 2 cut(s) 720, 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.