Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000236

Physical Location & Seq

Genomic Coordinates Reverse (-)

944231 .. 945521

Gene Structure 1291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG012300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 155 bp

ATGAAATCTCTAAGATACCTAGACTTGAGTTTCAACAGCTTAACTGGTGGACTCCCAGAGTATATGAAATCAGATTTACTTTACATGTCTTTTTCCACAAATATGCTTAATGGGACGATACCTGCTTGGATCCTTCTGGCAGTCCAAACTAGGAT

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

51

Amino Acids

5.8

Weight (kDa)

8.14

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000236)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica	MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica	Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis	pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis	RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata	RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora	Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa	Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha	Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana	Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	130
AclWI	GGATC	2 cut(s)	124, 137
AflIII	ACRYGT	1 cut(s)	84
AgsI	TTSAA	1 cut(s)	34
AluBI	AGCT	1 cut(s)	39
AluI	AGCT	1 cut(s)	39
AlwI	GGATC	2 cut(s)	124, 137
BamHI	GGATCC	1 cut(s)	129
BfaI	CTAG	2 cut(s)	20, 150
BfuAI	ACCTGC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	49
BseNI	ACTGG	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	131
BspMI	ACCTGC	1 cut(s)	130
BspPI	GGATC	2 cut(s)	124, 137
BsrI	ACTGG	1 cut(s)	49
BssMI	GATC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	11
BstKTI	GATC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	130
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	1 cut(s)	39
CviKI_1	RGCY	1 cut(s)	39
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
FaeI	CATG	1 cut(s)	88
FaiI	YATR	4 cut(s)	63, 65, 86, 104
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	1 cut(s)	84
FspBI	CTAG	2 cut(s)	20, 150
Hin1II	CATG	1 cut(s)	88
HinfI	GANTC	1 cut(s)	51
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	143
HpyF3I	CTNAG	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	129
LpnPI	CCDG	4 cut(s)	30, 69, 122, 135
MaeI	CTAG	2 cut(s)	20, 150
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MflI	RGATCY	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	45
MseI	TTAA	2 cut(s)	41, 108
MslI	CAYNNNNRTG	1 cut(s)	101
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	131
NspI	RCATGY	1 cut(s)	88
PciI	ACATGT	1 cut(s)	84
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
PscI	ACATGT	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	129
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	41, 108
Sau3AI	GATC	1 cut(s)	129
SchI	GAGTC	1 cut(s)	45
SetI	ASST	3 cut(s)	21, 41, 124
SgeI	CNNG	8 cut(s)	32, 37, 57, 68, 97, 134, 138, 149
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
SspMI	CTAG	2 cut(s)	20, 150
Tru1I	TTAA	2 cut(s)	41, 108
Tru9I	TTAA	2 cut(s)	41, 108
TspDTI	ATGAA	2 cut(s)	17, 80
XceI	RCATGY	1 cut(s)	88
XspI	CTAG	2 cut(s)	20, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.