MD10G1334600.v1.1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000236
Physical Location & Seq
Forward (+)
41195170 .. 41201868
6699 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1334600.v1.1.491

Sequence Viewer

Length: 606 bp
ATGACATGTGGAGTTCCCATTACTGAGGCACCGTTGTATGAAAAAGCTCGGCTTTCCCCGGTATCTCTCAAGTATTATGCTTTTTGTCTGCGCAAAGGCAATTACACTGTGACGCTTTATTTCAATGAAGTTGTATACACGAAGAATGAAGATTATACTAATTTAAGAAAACGTGTATTTGATGTATATATTCAGGATGTGAGGAGACTAAATTATGTCAACATTAGAGAGAAGAAGGGAAGTGAACCAATAACTGAAAATATTTCAGCTGTGGTTGTAAGTGATAGCGGTCTATTGAATATCCACTTTTACTGGCCTGGAAAGGGATCGTATCAATACCAGCCTAGTTTTAATGGACCTCTAATATCAGCTATTTCTGTGACTCCTGAGTTCAAAATTAGTTCCGATAAAAATAATGGTCAACGTGTTGCATTGATTACGCTCGCTTCAATTGTTGCTGCTCTGCCGCTTTCATTGGCTTTTGCTTGGAAGATGGGCTGGCTGTCAAGCGAAGAGTTCCGCATTTTAGCTCATGCGGGCGAGGAGCATAGTGCCTTATGCAGTTTCAGCTCATGCGGGCGAGGAGCATTTGAAAATTTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

202

Amino Acids

22.6

Weight (kDa)

8.6

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 9 - 125 2.2e-21 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 92
AccB1I GGYRCC 1 cut(s) 28
AccI GTMKAC 1 cut(s) 135
AciI CCGC 5 cut(s) 288, 467, 520, 536, 576
AclWI GGATC 1 cut(s) 334
AcsI RAATTY 1 cut(s) 595
AfiI CCNNNNNNNGG 1 cut(s) 323
AflIII ACRYGT 3 cut(s) 5, 172, 424
AgsI TTSAA 5 cut(s) 124, 298, 394, 450, 593
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 5 cut(s) 47, 269, 371, 530, 570
AluI AGCT 5 cut(s) 47, 269, 371, 530, 570
Alw26I GTCTC 1 cut(s) 199
AlwI GGATC 1 cut(s) 334
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 1 cut(s) 458
ApoI RAATTY 1 cut(s) 595
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 356
AsuC2I CCSGG 1 cut(s) 59
AvaII GGWCC 1 cut(s) 356
BanI GGYRCC 1 cut(s) 28
BbvI GCAGC 1 cut(s) 445
BccI CCATC 1 cut(s) 487
BciT130I CCWGG 1 cut(s) 318
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 1 cut(s) 345
BisI GCNGC 2 cut(s) 459, 467
BlsI GCNGC 2 cut(s) 460, 468
Bme1390I CCNGG 2 cut(s) 59, 318
Bme18I GGWCC 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 356
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 2 cut(s) 59, 318
BpuEI CTTGAG 1 cut(s) 53
BpuMI CCSGG 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 57
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse1I ACTGG 1 cut(s) 317
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMII CTCAG 2 cut(s) 15, 378
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 3 cut(s) 217, 557, 597
BseXI GCAGC 1 cut(s) 445
BshFI GGCC 1 cut(s) 316
BshNI GGYRCC 1 cut(s) 28
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 199
BsnI GGCC 1 cut(s) 316
Bsp143I GATC 1 cut(s) 326
BspACI CCGC 5 cut(s) 288, 467, 520, 536, 576
BspANI GGCC 1 cut(s) 316
BspCNI CTCAG 2 cut(s) 16, 379
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 28
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 1 cut(s) 326
BssNAI GTATAC 1 cut(s) 136
Bst1107I GTATAC 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 2 cut(s) 33, 109
Bst6I CTCTTC 1 cut(s) 507
BstC8I GCNNGC 4 cut(s) 444, 500, 538, 578
BstDEI CTNAG 2 cut(s) 24, 387
BstF5I GGATG 1 cut(s) 202
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 1 cut(s) 329
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 1 cut(s) 326
BstMWI GCNNNNNNNGC 1 cut(s) 567
BstNI CCWGG 1 cut(s) 318
BstNSI RCATGY 1 cut(s) 9
BstSCI CCNGG 2 cut(s) 57, 316
BstV1I GCAGC 1 cut(s) 445
BstZ17I GTATAC 1 cut(s) 136
BsuRI GGCC 1 cut(s) 316
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 4 cut(s) 444, 500, 538, 578
CfoI GCGC 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 356
CseI GACGC 1 cut(s) 121
CviAII CATG 3 cut(s) 6, 533, 573
DdeI CTNAG 2 cut(s) 24, 387
DpnI GATC 1 cut(s) 328
DpnII GATC 1 cut(s) 326
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Eco47I GGWCC 1 cut(s) 356
EcoRII CCWGG 1 cut(s) 316
FaeI CATG 3 cut(s) 9, 536, 576
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FatI CATG 3 cut(s) 5, 532, 572
FauI CCCGC 2 cut(s) 529, 569
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 459, 467
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 2 cut(s) 459, 467
FspBI CTAG 1 cut(s) 345
FspI TGCGCA 1 cut(s) 92
GlaI GCGC 1 cut(s) 92
GluI GCNGC 2 cut(s) 459, 467
HaeIII GGCC 1 cut(s) 316
HapII CCGG 1 cut(s) 59
HgaI GACGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 93
Hin1II CATG 3 cut(s) 9, 536, 576
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HincII GTYRAC 2 cut(s) 220, 422
HindII GTYRAC 2 cut(s) 220, 422
HinfI GANTC 1 cut(s) 382
HpaII CCGG 1 cut(s) 59
Hpy166II GTNNAC 4 cut(s) 136, 220, 245, 422
Hpy188I TCNGA 1 cut(s) 406
Hpy188III TCNNGA 2 cut(s) 194, 386
Hpy8I GTNNAC 4 cut(s) 136, 220, 245, 422
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 2 cut(s) 33, 109
HpyCH4IV ACGT 2 cut(s) 172, 424
HpyCH4V TGCA 2 cut(s) 431, 561
HpyF10VI GCNNNNNNNGC 1 cut(s) 567
HpyF3I CTNAG 2 cut(s) 24, 387
HpySE526I ACGT 2 cut(s) 172, 424
Hsp92II CATG 3 cut(s) 9, 536, 576
HspAI GCGC 1 cut(s) 91
Kzo9I GATC 1 cut(s) 326
LmnI GCTCC 2 cut(s) 544, 584
LpnPI CCDG 8 cut(s) 72, 179, 298, 303, 330, 353, 399, 484
Lsp1109I GCAGC 1 cut(s) 445
MaeI CTAG 1 cut(s) 345
MaeII ACGT 2 cut(s) 172, 424
MaeIII GTNAC 2 cut(s) 109, 379
MalI GATC 1 cut(s) 328
MboI GATC 1 cut(s) 326
MboII GAAGA 5 cut(s) 154, 161, 244, 502, 524
MfeI CAATTG 1 cut(s) 450
MluCI AATT 6 cut(s) 100, 160, 211, 396, 450, 595
MlyI GAGTC 1 cut(s) 376
MnlI CCTC 5 cut(s) 19, 195, 369, 535, 575
MseI TTAA 2 cut(s) 164, 351
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 2 cut(s) 59, 318
MunI CAATTG 1 cut(s) 450
MvaI CCWGG 1 cut(s) 318
MwoI GCNNNNNNNGC 1 cut(s) 567
NciI CCSGG 1 cut(s) 59
NdeII GATC 1 cut(s) 326
NlaIII CATG 3 cut(s) 9, 536, 576
NlaIV GGNNCC 1 cut(s) 30
NmeAIII GCCGAG 1 cut(s) 28
NmuCI GTSAC 2 cut(s) 109, 379
NsbI TGCGCA 1 cut(s) 92
NspI RCATGY 1 cut(s) 9
PciI ACATGT 1 cut(s) 5
PkrI GCNGC 2 cut(s) 460, 468
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
PscI ACATGT 1 cut(s) 5
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 1 cut(s) 356
PvuII CAGCTG 1 cut(s) 269
SaqAI TTAA 2 cut(s) 164, 351
SatI GCNGC 2 cut(s) 459, 467
Sau3AI GATC 1 cut(s) 326
Sau96I GGNCC 1 cut(s) 356
SchI GAGTC 1 cut(s) 376
ScrFI CCNGG 2 cut(s) 59, 318
SetI ASST 8 cut(s) 49, 175, 271, 361, 373, 427, 532, 572
SinI GGWCC 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 6 cut(s) 100, 160, 211, 396, 450, 595
SsiI CCGC 5 cut(s) 288, 467, 520, 536, 576
SspI AATATT 1 cut(s) 262
SspMI CTAG 1 cut(s) 345
StyD4I CCNGG 2 cut(s) 57, 316
TaaI ACNGT 2 cut(s) 33, 109
TaiI ACGT 2 cut(s) 175, 427
TasI AATT 6 cut(s) 100, 160, 211, 396, 450, 595
TauI GCSGC 1 cut(s) 469
Tru1I TTAA 2 cut(s) 164, 351
Tru9I TTAA 2 cut(s) 164, 351
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 2 cut(s) 109, 379
TseI GCWGC 1 cut(s) 458
Tsp45I GTSAC 2 cut(s) 109, 379
TspDTI ATGAA 4 cut(s) 54, 141, 162, 462
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 356
XapI RAATTY 1 cut(s) 595
XceI RCATGY 1 cut(s) 9
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.