Rh4BG153100

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
27567497 .. 27569434
1938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG153100.1

Sequence Viewer

Length: 231 bp
ATGCCCGATGAAGAAGTGAGAGCTCTTAAAGAAATAGCATATAAGTTGGAGTTAGAAGGACGAATGTTCGATGAAGGCTCACTTTGCAATGGAAGCAGCGATGTTGGCGTCTACTGTGACTGCAGTTCCGGCACCATTTGCCACGTCAAATATATGAGTCTTTCAAACAATCAACTGACTGGGCCTATACCAAAGAGCTTAGGGAATTTGACTTTCGCCGATACTATGTAA

Protein Analysis

76

Amino Acids

8.28

Weight (kDa)

4.53

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AccI GTMKAC 1 cut(s) 111
AcsI RAATTY 1 cut(s) 205
AcyI GRCGYC 1 cut(s) 108
AgsI TTSAA 1 cut(s) 165
AjiI CACGTC 1 cut(s) 145
AluBI AGCT 2 cut(s) 23, 198
AluI AGCT 2 cut(s) 23, 198
Alw21I GWGCWC 1 cut(s) 25
AoxI GGCC 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 96
ApoI RAATTY 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 182
BanI GGYRCC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 121
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
BmgBI CACGTC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 133
BmrI ACTGGG 1 cut(s) 189
BmuI ACTGGG 1 cut(s) 189
Bpu10I CCTNAGC 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 184
Bse3DI GCAATG 1 cut(s) 94
BseMI GCAATG 1 cut(s) 94
BseNI ACTGG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 108
BshFI GGCC 1 cut(s) 184
BshNI GGYRCC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 1 cut(s) 129
BsnI GGCC 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 25
BspANI GGCC 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 133
BspMAI CTGCAG 1 cut(s) 125
BspT107I GGYRCC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 94
BsrI ACTGG 1 cut(s) 184
BssNI GRCGYC 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 116
BstACI GRCGYC 1 cut(s) 108
BstAPI GCANNNNNTGC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 199
BstMWI GCNNNNNNNGC 5 cut(s) 84, 93, 105, 129, 138
BstSFI CTRYAG 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 108
BsuRI GGCC 1 cut(s) 184
BtgZI GCGATG 1 cut(s) 114
BtrI CACGTC 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 182
CseI GACGC 1 cut(s) 97
CviJI RGCY 4 cut(s) 23, 78, 184, 198
CviKI_1 RGCY 4 cut(s) 23, 78, 184, 198
DdeI CTNAG 1 cut(s) 199
Ecl136II GAGCTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 25
Eco53kI GAGCTC 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 25
FaiI YATR 6 cut(s) 40, 42, 153, 155, 188, 227
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 97
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 97
GluI GCNGC 1 cut(s) 97
HaeIII GGCC 1 cut(s) 184
HapII CCGG 1 cut(s) 129
HgaI GACGC 1 cut(s) 97
Hin1I GRCGYC 1 cut(s) 108
HinfI GANTC 1 cut(s) 157
HpaII CCGG 1 cut(s) 129
Hpy166II GTNNAC 1 cut(s) 112
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 2 cut(s) 50, 68
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 2 cut(s) 87, 123
HpyF10VI GCNNNNNNNGC 5 cut(s) 84, 93, 105, 129, 138
HpyF3I CTNAG 1 cut(s) 199
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 1 cut(s) 108
LpnPI CCDG 2 cut(s) 142, 165
Lsp1109I GCAGC 1 cut(s) 108
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 116
MboII GAAGA 1 cut(s) 23
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 1 cut(s) 205
MlyI GAGTC 1 cut(s) 166
MmeI TCCRAC 1 cut(s) 27
MseI TTAA 1 cut(s) 27
MspI CCGG 1 cut(s) 129
MwoI GCNNNNNNNGC 5 cut(s) 84, 93, 105, 129, 138
NlaIV GGNNCC 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 116
PkrI GCNGC 1 cut(s) 98
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
Psp124BI GAGCTC 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 1 cut(s) 182
PstI CTGCAG 1 cut(s) 125
SacI GAGCTC 1 cut(s) 25
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 1 cut(s) 166
SduI GDGCHC 1 cut(s) 25
SetI ASST 3 cut(s) 25, 147, 200
SfcI CTRYAG 1 cut(s) 121
SgeI CNNG 4 cut(s) 17, 141, 155, 192
Sse9I AATT 1 cut(s) 205
SstI GAGCTC 1 cut(s) 25
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 69
TasI AATT 1 cut(s) 205
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 1 cut(s) 96
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 24, 87
XapI RAATTY 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.