Rw1G012750

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000236
Physical Location & Seq
Reverse (-)
28287879 .. 28288389
511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G012750.1

Sequence Viewer

Length: 309 bp
ATGCCACAGGGATATATAGCACCAGAGTATGTTCGAGGAATTGTAACATTTAAAACTGATGTCTACAGTTTCGGGTTAGTTCTACATGAAACTGTTAGTGGAAAGACAAATGCAGGAACCAAGCGAGATAGCCTAGAAAGTGGATTCTCTTATACGGCTTATCATTTACATGGAAAAGGAAGGCTGTTGGACTTGGTTGACAGAAACTTGTCGGGCAGTTATGACGCAAAAGAAGCCATTATCATCTTGAACTTAGCAGTTAAGTGCACCAGTATAGCTCCAGCCGTGAGGCCTACGTACTATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

102

Amino Acids

11.2

Weight (kDa)

8.71

Isoelectric Point (pI)

29.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 63
AfaI GTAC 1 cut(s) 299
AgsI TTSAA 1 cut(s) 250
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
Alw21I GWGCWC 1 cut(s) 269
Alw44I GTGCAC 1 cut(s) 265
AoxI GGCC 1 cut(s) 290
ApaLI GTGCAC 1 cut(s) 265
BaeGI GKGCMC 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 269
BceAI ACGGC 2 cut(s) 171, 269
BfaI CTAG 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 264
BsaAI YACGTR 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 270
BseSI GKGCMC 1 cut(s) 269
BshFI GGCC 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 269
BsnI GGCC 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 269
BspANI GGCC 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 118
BsrI ACTGG 1 cut(s) 270
Bst4CI ACNGT 2 cut(s) 68, 94
BstBAI YACGTR 1 cut(s) 297
BstDEI CTNAG 1 cut(s) 253
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstSFI CTRYAG 1 cut(s) 64
BstSLI GKGCMC 1 cut(s) 269
BstSNI TACGTA 1 cut(s) 297
BsuRI GGCC 1 cut(s) 292
CseI GACGC 1 cut(s) 233
Csp6I GTAC 1 cut(s) 298
CviAII CATG 2 cut(s) 86, 170
CviJI RGCY 7 cut(s) 132, 158, 184, 236, 278, 284, 292
CviKI_1 RGCY 7 cut(s) 132, 158, 184, 236, 278, 284, 292
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 1 cut(s) 253
DraI TTTAAA 1 cut(s) 52
Eco105I TACGTA 1 cut(s) 297
Eco147I AGGCCT 1 cut(s) 292
FaeI CATG 2 cut(s) 89, 173
FaiI YATR 9 cut(s) 15, 17, 30, 87, 153, 171, 222, 275, 303
FatI CATG 2 cut(s) 85, 169
FblI GTMKAC 1 cut(s) 63
FspBI CTAG 1 cut(s) 134
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 1 cut(s) 292
HgaI GACGC 1 cut(s) 233
Hin1II CATG 2 cut(s) 89, 173
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 1 cut(s) 144
Hpy166II GTNNAC 3 cut(s) 64, 199, 267
Hpy188I TCNGA 1 cut(s) 308
Hpy188III TCNNGA 1 cut(s) 247
Hpy8I GTNNAC 3 cut(s) 64, 199, 267
HpyAV CCTTC 1 cut(s) 174
HpyCH4III ACNGT 2 cut(s) 68, 94
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 2 cut(s) 113, 267
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 253
HpySE526I ACGT 1 cut(s) 296
Hsp92II CATG 2 cut(s) 89, 173
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 4 cut(s) 36, 99, 283, 294
MaeI CTAG 1 cut(s) 134
MaeII ACGT 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 269
MluCI AATT 1 cut(s) 39
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 2 cut(s) 29, 282
MseI TTAA 2 cut(s) 51, 261
MslI CAYNNNNRTG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 233
NlaIII CATG 2 cut(s) 89, 173
NlaIV GGNNCC 1 cut(s) 118
PceI AGGCCT 1 cut(s) 292
PfeI GAWTC 1 cut(s) 144
Ppu21I YACGTR 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 118
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 168
SaqAI TTAA 2 cut(s) 51, 261
SduI GDGCHC 1 cut(s) 269
SetI ASST 2 cut(s) 280, 299
SfcI CTRYAG 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 168
SnaBI TACGTA 1 cut(s) 297
Sse9I AATT 1 cut(s) 39
SseBI AGGCCT 1 cut(s) 292
SspMI CTAG 1 cut(s) 134
StuI AGGCCT 1 cut(s) 292
TaaI ACNGT 2 cut(s) 68, 94
TaiI ACGT 1 cut(s) 299
TaqI TCGA 1 cut(s) 34
TasI AATT 1 cut(s) 39
TfiI GAWTC 1 cut(s) 144
Tru1I TTAA 2 cut(s) 51, 261
Tru9I TTAA 2 cut(s) 51, 261
TspDTI ATGAA 1 cut(s) 102
VneI GTGCAC 1 cut(s) 265
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.