Rh5CG308200

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000236
Physical Location & Seq
Reverse (-)
34047995 .. 34051939
3945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG308200.1

Sequence Viewer

Length: 321 bp
ATGGTGACGGCGGTGGTGTTGCCAAGCTCTTGGTTGCACAACGACGGCGCACTGCCCAGGTGTATTCACTTGGTGCATGAGCTGCTAGCAGATGGATTGTTGGTGGCTGAACTGCAAGGAAAAATTGTAGCTGTGAAGAAACTTTCCTCTCATTCAGAGGAAAGGATAAATCAGTTGAAAAATGAGTTTTATGCTTTGAAATCAATGAGTCAAGAGAACCTTGTTCAGTTACTGGACGTTTACAATGCAAAAGGCCTGCATTTGCTCATCTATGAATATATGCAAAACAAATCCCTTGCACACGCTTTATTTGGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

106

Amino Acids

11.91

Weight (kDa)

7.01

Isoelectric Point (pI)

37.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 37 - 103 8.1e-09 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 38 - 103 6e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 11
AdeI CACNNNGTG 1 cut(s) 73
AgsI TTSAA 2 cut(s) 178, 199
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 3 cut(s) 27, 82, 131
AluI AGCT 3 cut(s) 27, 82, 131
AlwNI CAGNNNCTG 1 cut(s) 232
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 82
AspLEI GCGC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 16
AsuNHI GCTAGC 1 cut(s) 85
BbvI GCAGC 1 cut(s) 69
BccI CCATC 1 cut(s) 86
BceAI ACGGC 2 cut(s) 24, 61
BciT130I CCWGG 1 cut(s) 58
BfaI CTAG 1 cut(s) 86
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
Bme1390I CCNGG 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 58
BmtI GCTAGC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 237
BseXI GCAGC 1 cut(s) 69
BshFI GGCC 1 cut(s) 255
BsnI GGCC 1 cut(s) 255
BspACI CCGC 1 cut(s) 11
BspANI GGCC 1 cut(s) 255
BspOI GCTAGC 1 cut(s) 89
BsrI ACTGG 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 58
BstAPI GCANNNNNTGC 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 87, 257
BstHHI GCGC 1 cut(s) 50
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 69
BstXI CCANNNNNNTGG 1 cut(s) 30
BsuRI GGCC 1 cut(s) 255
BtsI GCAGTG 1 cut(s) 50
BtsIMutI CAGTG 1 cut(s) 50
Cac8I GCNNGC 2 cut(s) 87, 257
CaiI CAGNNNCTG 1 cut(s) 232
CfoI GCGC 1 cut(s) 50
CviAII CATG 1 cut(s) 77
CviJI RGCY 5 cut(s) 27, 82, 107, 131, 255
CviKI_1 RGCY 5 cut(s) 27, 82, 107, 131, 255
DraIII CACNNNGTG 1 cut(s) 73
Eco147I AGGCCT 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 56
FaeI CATG 1 cut(s) 80
FaiI YATR 5 cut(s) 78, 192, 273, 279, 281
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FatI CATG 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 1 cut(s) 86
GlaI GCGC 1 cut(s) 49
GluI GCNGC 1 cut(s) 83
HaeIII GGCC 1 cut(s) 255
HhaI GCGC 1 cut(s) 50
Hin1II CATG 1 cut(s) 80
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HinfI GANTC 1 cut(s) 208
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 7 cut(s) 37, 76, 115, 248, 259, 283, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 1 cut(s) 80
HspAI GCGC 1 cut(s) 48
LpnPI CCDG 4 cut(s) 43, 70, 218, 269
Lsp1109I GCAGC 1 cut(s) 69
MaeI CTAG 1 cut(s) 86
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 2 cut(s) 4, 228
MboII GAAGA 1 cut(s) 148
MluCI AATT 1 cut(s) 123
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 2 cut(s) 151, 157
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 82
NheI GCTAGC 1 cut(s) 85
NlaIII CATG 1 cut(s) 80
NmuCI GTSAC 1 cut(s) 4
PceI AGGCCT 1 cut(s) 255
PkrI GCNGC 1 cut(s) 84
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PstNI CAGNNNCTG 1 cut(s) 232
SatI GCNGC 1 cut(s) 83
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 1 cut(s) 58
SetI ASST 6 cut(s) 29, 62, 84, 133, 222, 240
Sse9I AATT 1 cut(s) 123
SseBI AGGCCT 1 cut(s) 255
SsiI CCGC 1 cut(s) 11
SspMI CTAG 1 cut(s) 86
StuI AGGCCT 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 56
TaiI ACGT 1 cut(s) 240
TasI AATT 1 cut(s) 123
TscAI CASTG 1 cut(s) 57
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 288
TspRI CASTG 1 cut(s) 57
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.