Rroxscaffold_1G00075050

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000236
Physical Location & Seq
Forward (+)
95821060 .. 95822098
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00075050.1

Sequence Viewer

Length: 768 bp
ATGGTTGCAGACTCAAAGTCCAAATTGAAACTTGATTGGGAAGCTAGGTTTAACATTTGTTTGGGAATAGCTAGGGGATTGGTGTTTCTGCATGAGCATCCCAAGCTGAAGATGGTTCACAGTGACATTAAATCCGCTAATATTCTTCTCGATGGAAAGCTCAAGGCTAAAATATCAGACTTTGGATTGGCAAACCTTTACACCAAAGATGATCAATTCAAGTTCATCAAAGTAGAAGTGACAGAGGGATATATGGCACCTGAGTATGTTCGAGGAGTTGTGACATCTAAAGCTGATGTATACTTATACTTGAAACTGCTTGTGATTTACAGCGAAAAAGAAAGCTGGTGGACGGTTGATAAAACCTTGTCTAACAAATATGATGCAAAACAAGCCATCATAATCTTGAATTTAGCAGTAAAATGCATCAATATATCGCCAACTCTGAGGCCTACTATGTCTGAAGTTGTGAGTGTTCTCGTTGGCGACAAAAAAATTGAGGAGATTTGTTCCCCTGCTCTGATTGAGGACATCAATGACCCCCACGTGAAGGAGATCGACGAGTTCGCGGTGTCTGAGTACAACAAGAAATCCGGGAAGAAGCTGGAGTTACAGAGCGTGGTGAAGGGCAAGACTCAGGTCGTCCCCGGCGAGAATTACCAACTCGTCATCGCCGTCAAGGATAACTCCGAGGCGGCCAAGTACGAGGGCATTGTGTATGAGAGGATTTGGGAACACACTAGGGAATTGCGCGCTCTCCTTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 Malectin Pkinase Pkinase_Tyr

Protein Analysis

255

Amino Acids

28.95

Weight (kDa)

7.65

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 8 - 159 5.8e-16 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 15 - 151 4.3e-19 Protein kinase domain
SQAPI PF16845 175 - 251 6.1e-28 Aspartic acid proteinase inhibitor
Cystatin PF00031 175 - 233 1.6e-12 Cystatin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000236)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800 FvH4_3g00800
malus_domestica MD00G1124000.v1.1 MD10G1333200.v1.1 MD10G1333300.v1.1 MD10G1333800.v1.1 MD10G1333900.v1.1 MD10G1334000.v1.1 MD10G1334300.v1.1 MD10G1334500.v1.1 MD10G1334600.v1.1
prunus_persica Prupe.6G125000_v2.0.a1 Prupe.6G126100_v2.0.a1
pyrus_communis pycom10g28270 pycom10g28410 pycom10g28420 pycom10g28430
rosa_chinensis RchiOBHm_Chr1g0337521 RchiOBHm_Chr1g0337731 RchiOBHm_Chr3g0485891 RchiOBHm_Chr4g0391431 RchiOBHm_Chr4g0391551 RchiOBHm_Chr4g0391571 RchiOBHm_Chr4g0391641 RchiOBHm_Chr4g0391651 RchiOBHm_Chr4g0391661 RchiOBHm_Chr4g0391791 RchiOBHm_Chr4g0409301 RchiOBHm_Chr5g0001061 RchiOBHm_Chr5g0001201 RchiOBHm_Chr5g0001251 RchiOBHm_Chr5g0001261 RchiOBHm_Chr5g0001271 RchiOBHm_Chr5g0040441 RchiOBHm_Chr6g0279971
rosa_laevigata RLG00000009856 RLG00000009862 RLG00000029911 RLG00000030125 RLG00000030918
rosa_multiflora Rmu_co8113804.1_g000001 Rmu_sc0000255.1_g000042 Rmu_sc0001174.1_g000026 Rmu_sc0001706.1_g000014 Rmu_sc0001706.1_g000017 Rmu_sc0001706.1_g000032 Rmu_sc0001706.1_g000039 Rmu_sc0002377.1_g000003 Rmu_sc0002772.1_g000022 Rmu_sc0004189.1_g000005 Rmu_sc0004189.1_g000025 Rmu_sc0004189.1_g000033 Rmu_sc0004862.1_g000015 Rmu_sc0004876.1_g000018 Rmu_sc0014338.1_g000004 Rmu_sc0024491.1_g000002 Rmu_sc0042682.1_g000001
rosa_roxburghii Rroxscaffold_1G00005720 Rroxscaffold_1G00040220 Rroxscaffold_1G00040230 Rroxscaffold_1G00040260 Rroxscaffold_1G00050150 Rroxscaffold_1G00050170 Rroxscaffold_1G00075050 Rroxscaffold_1G00075070 Rroxscaffold_1G00075080 Rroxscaffold_1G00075110 Rroxscaffold_1G00075170 Rroxscaffold_1G00075230 Rroxscaffold_3G00274520 Rroxscaffold_4G00314190 Rroxscaffold_4G00314200 Rroxscaffold_5G00334510 Rroxscaffold_5G00337150 Rroxscaffold_5G00353810 Rroxscaffold_6G00396280 Rroxscaffold_7G00198980
rosa_rugosa Rorug03G0336100 Rorug04G0092200 Rorug04G0389300 Rorug04G0389500 Rorug04G0389500 Rorug05G0185000
rosa_samantha Rh1CG145400 Rh3AG271500 Rh4AG037800 Rh4AG037900 Rh4AG038600 Rh4AG155300 Rh4BG031900 Rh4BG032700 Rh4BG152800 Rh4BG153100 Rh4CG040900 Rh4CG041000 Rh4CG041200 Rh4DG035300 Rh4DG035400 Rh4DG148200 Rh5AG008600 Rh5AG008700 Rh5AG009000 Rh5AG009300 Rh5AG272100 Rh5BG010700 Rh5BG010800 Rh5BG011200 Rh5BG011700 Rh5BG011800 Rh5BG012100 Rh5BG012200 Rh5BG012300 Rh5CG009300 Rh5CG009800 Rh5CG009900 Rh5CG308100 Rh5CG308200 Rh5CG309500 Rh5DG009500 Rh5DG009900 Rh5DG284400 Rh5DG284500
rosa_wichuraiana Rw1G012750 Rw4G002940 Rw4G002980 Rw4G012680 Rw5G000870 Rw5G000940 Rw5G000970 Rw5G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 256
AccI GTMKAC 1 cut(s) 300
AccII CGCG 2 cut(s) 569, 753
AciI CCGC 3 cut(s) 135, 569, 695
AcoI YGGCCR 1 cut(s) 696
AcsI RAATTY 1 cut(s) 409
AcuI CTGAAG 2 cut(s) 128, 483
AcvI CACGTG 1 cut(s) 547
AfaI GTAC 2 cut(s) 581, 704
AfiI CCNNNNNNNGG 1 cut(s) 550
AgsI TTSAA 5 cut(s) 28, 220, 313, 409, 764
AhdI GACNNNNNGTC 1 cut(s) 16
AluBI AGCT 7 cut(s) 44, 71, 106, 160, 293, 345, 604
AluI AGCT 7 cut(s) 44, 71, 106, 160, 293, 345, 604
AoxI GGCC 2 cut(s) 449, 696
ApoI RAATTY 1 cut(s) 409
AspLEI GCGC 2 cut(s) 753, 755
AsuC2I CCSGG 2 cut(s) 595, 648
AsuHPI GGTGA 1 cut(s) 634
BanI GGYRCC 1 cut(s) 256
BbrPI CACGTG 1 cut(s) 547
BccI CCATC 3 cut(s) 106, 146, 404
BceAI ACGGC 1 cut(s) 659
BclI TGATCA 1 cut(s) 211
BcnI CCSGG 2 cut(s) 595, 648
BfaI CTAG 3 cut(s) 45, 72, 741
BisI GCNGC 1 cut(s) 696
BlsI GCNGC 1 cut(s) 697
Bme1390I CCNGG 2 cut(s) 595, 648
BmeRI GACNNNNNGTC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 2 cut(s) 595, 648
BmsI GCATC 3 cut(s) 106, 373, 435
BoxI GACNNNNGTC 1 cut(s) 638
BpmI CTGGAG 1 cut(s) 626
BpuEI CTTGAG 1 cut(s) 146
BpuMI CCSGG 2 cut(s) 595, 648
BsaAI YACGTR 1 cut(s) 547
BsaJI CCNNGG 2 cut(s) 646, 690
Bsc4I CCNNNNNNNGG 1 cut(s) 550
BseDI CCNNGG 2 cut(s) 646, 690
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 1 cut(s) 550
BseMII CTCAG 4 cut(s) 252, 437, 567, 650
BsePI GCGCGC 1 cut(s) 751
BseRI GAGGAG 2 cut(s) 288, 515
Bsh1236I CGCG 2 cut(s) 569, 753
BshFI GGCC 2 cut(s) 451, 698
BshNI GGYRCC 1 cut(s) 256
BsiSI CCGG 2 cut(s) 594, 648
BslFI GGGAC 1 cut(s) 629
BslI CCNNNNNNNGG 1 cut(s) 550
BsmFI GGGAC 1 cut(s) 629
BsnI GGCC 2 cut(s) 451, 698
Bsp143I GATC 2 cut(s) 211, 555
BspACI CCGC 3 cut(s) 135, 569, 695
BspANI GGCC 2 cut(s) 451, 698
BspCNI CTCAG 4 cut(s) 253, 438, 568, 649
BspFNI CGCG 2 cut(s) 569, 753
BspLI GGNNCC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 256
BssECI CCNNGG 2 cut(s) 646, 690
BssHII GCGCGC 1 cut(s) 751
BssMI GATC 2 cut(s) 211, 555
BssNAI GTATAC 1 cut(s) 301
Bst1107I GTATAC 1 cut(s) 301
Bst4CI ACNGT 2 cut(s) 122, 355
BstBAI YACGTR 1 cut(s) 547
BstC8I GCNNGC 1 cut(s) 753
BstDEI CTNAG 4 cut(s) 261, 446, 576, 636
BstF5I GGATG 1 cut(s) 97
BstFNI CGCG 2 cut(s) 569, 753
BstHHI GCGC 2 cut(s) 753, 755
BstKTI GATC 2 cut(s) 214, 558
BstMBI GATC 2 cut(s) 211, 555
BstMWI GCNNNNNNNGC 2 cut(s) 103, 392
BstPAI GACNNNNGTC 1 cut(s) 638
BstSCI CCNGG 2 cut(s) 593, 646
BstUI CGCG 2 cut(s) 569, 753
BstZ17I GTATAC 1 cut(s) 301
BsuRI GGCC 2 cut(s) 451, 698
BtgZI GCGATG 1 cut(s) 655
BtsCI GGATG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 753
CfoI GCGC 2 cut(s) 753, 755
Csp6I GTAC 2 cut(s) 580, 703
CviAII CATG 1 cut(s) 92
CviQI GTAC 2 cut(s) 580, 703
DdeI CTNAG 4 cut(s) 261, 446, 576, 636
DpnI GATC 2 cut(s) 213, 557
DpnII GATC 2 cut(s) 211, 555
DriI GACNNNNNGTC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 696
Eam1105I GACNNNNNGTC 1 cut(s) 16
Eco147I AGGCCT 1 cut(s) 451
Eco57I CTGAAG 2 cut(s) 128, 483
Eco72I CACGTG 1 cut(s) 547
EcoT22I ATGCAT 1 cut(s) 428
FaeI CATG 1 cut(s) 95
FaqI GGGAC 1 cut(s) 629
FatI CATG 1 cut(s) 91
FbaI TGATCA 1 cut(s) 211
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 696
FokI GGATG 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 696
FspBI CTAG 3 cut(s) 45, 72, 741
GlaI GCGC 2 cut(s) 752, 754
GluI GCNGC 1 cut(s) 696
GsuI CTGGAG 1 cut(s) 626
HaeIII GGCC 2 cut(s) 451, 698
HapII CCGG 2 cut(s) 594, 648
HhaI GCGC 2 cut(s) 753, 755
Hin1II CATG 1 cut(s) 95
Hin6I GCGC 2 cut(s) 751, 753
HinP1I GCGC 2 cut(s) 751, 753
HinfI GANTC 2 cut(s) 11, 634
HpaII CCGG 2 cut(s) 594, 648
HphI GGTGA 1 cut(s) 634
Hpy166II GTNNAC 3 cut(s) 118, 301, 351
Hpy188I TCNGA 6 cut(s) 178, 447, 463, 522, 577, 691
Hpy188III TCNNGA 2 cut(s) 149, 406
Hpy8I GTNNAC 3 cut(s) 118, 301, 351
Hpy99I CGWCG 1 cut(s) 563
HpyAV CCTTC 2 cut(s) 544, 619
HpyCH4III ACNGT 2 cut(s) 122, 355
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 4 cut(s) 8, 91, 386, 426
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 392
HpyF3I CTNAG 4 cut(s) 261, 446, 576, 636
HpySE526I ACGT 1 cut(s) 546
Hsp92II CATG 1 cut(s) 95
HspAI GCGC 2 cut(s) 751, 753
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 2 cut(s) 211, 555
LpnPI CCDG 7 cut(s) 273, 331, 528, 590, 607, 623, 661
LweI GCATC 3 cut(s) 106, 373, 435
MaeI CTAG 3 cut(s) 45, 72, 741
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 4 cut(s) 122, 238, 280, 609
MalI GATC 2 cut(s) 213, 557
MboI GATC 2 cut(s) 211, 555
MboII GAAGA 3 cut(s) 121, 137, 610
MluCI AATT 6 cut(s) 23, 215, 409, 495, 655, 746
MlyI GAGTC 2 cut(s) 5, 628
MnlI CCTC 8 cut(s) 238, 266, 441, 493, 520, 685, 700, 717
Mph1103I ATGCAT 1 cut(s) 428
MseI TTAA 2 cut(s) 51, 129
MspI CCGG 2 cut(s) 594, 648
MspR9I CCNGG 2 cut(s) 595, 648
MvnI CGCG 2 cut(s) 569, 753
MwoI GCNNNNNNNGC 2 cut(s) 103, 392
NciI CCSGG 2 cut(s) 595, 648
NdeII GATC 2 cut(s) 211, 555
NlaIII CATG 1 cut(s) 95
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 3 cut(s) 122, 238, 280
NsiI ATGCAT 1 cut(s) 428
PauI GCGCGC 1 cut(s) 751
PceI AGGCCT 1 cut(s) 451
PcsI WCGNNNNNNNCGW 2 cut(s) 648, 672
PfoI TCCNGGA 1 cut(s) 593
PkrI GCNGC 1 cut(s) 697
PleI GAGTC 2 cut(s) 5, 628
PmaCI CACGTG 1 cut(s) 547
PmlI CACGTG 1 cut(s) 547
PpsI GAGTC 2 cut(s) 5, 628
Ppu21I YACGTR 1 cut(s) 547
PshAI GACNNNNGTC 1 cut(s) 638
PspCI CACGTG 1 cut(s) 547
PspN4I GGNNCC 1 cut(s) 258
PteI GCGCGC 1 cut(s) 751
RsaI GTAC 2 cut(s) 581, 704
RsaNI GTAC 2 cut(s) 580, 703
SaqAI TTAA 2 cut(s) 51, 129
SatI GCNGC 1 cut(s) 696
Sau3AI GATC 2 cut(s) 211, 555
SchI GAGTC 2 cut(s) 5, 628
ScrFI CCNGG 2 cut(s) 595, 648
SfaNI GCATC 3 cut(s) 106, 373, 435
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 6 cut(s) 23, 215, 409, 495, 655, 746
SseBI AGGCCT 1 cut(s) 451
SsiI CCGC 3 cut(s) 135, 569, 695
SspI AATATT 1 cut(s) 142
SspMI CTAG 3 cut(s) 45, 72, 741
StuI AGGCCT 1 cut(s) 451
StyD4I CCNGG 2 cut(s) 593, 646
TaaI ACNGT 2 cut(s) 122, 355
TaiI ACGT 1 cut(s) 549
TaqI TCGA 3 cut(s) 150, 271, 558
TasI AATT 6 cut(s) 23, 215, 409, 495, 655, 746
TatI WGTACW 1 cut(s) 579
TauI GCSGC 1 cut(s) 698
Tru1I TTAA 2 cut(s) 51, 129
Tru9I TTAA 2 cut(s) 51, 129
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 3 cut(s) 122, 238, 280
Tsp45I GTSAC 3 cut(s) 122, 238, 280
TspDTI ATGAA 1 cut(s) 214
TspRI CASTG 1 cut(s) 127
XapI RAATTY 1 cut(s) 409
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 300
XspI CTAG 3 cut(s) 45, 72, 741
Zsp2I ATGCAT 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.